Non-Coding RNA Search

Ss1.1-Pig4-TMW8028P01.5

Sequence:


               
               CCACAGCCCCGGCTTCCTCCTTCGGCTCCCTCGACACCGCAGCCACACCTCGGCTCTGGC
CAACATGCGATGTCCTAGCAGGCCCCCCCTCGCCTCCCTGGCACCCCCAGCCCACCCCAG
ACCCTTCCCTGTGTCCCCTGGTTGCAGCCAGCAAGATTGGGCTTCGGGCAGGCACCCTGT
GGCCTAGGGGGCCTCTCGGCCGGCCCCGTACTTCTCACCAGCACTTAGATTTAGACTGGC
CAGCCGACTTGCGAGGAGACGTGGCAGTGAGTTGGAAGGGGAGGGCTGGTGGGGCCTAGA
CCTTAGAGATACGAGGCCAGCAAGGACCCGACTGAACCCAAAGCAGAAAACCCCCAGCCC
TTTTTCTCCCAATCACTGAAACCCCAGAAGGGCGTAGCCATTCTGCAGCCTCGTTGTAGC
AGGCTGAGGAGTGGCCCCCAGAATGGCCATGTTTGAATCCCAAGAAGCTGTGGACATTAC
CTTCGATGACAAAAGGGACTTTGCAGATGTAATTAAGGGTCTTCAGACAAGGTGACTGTC
CTGGATTGTCTAGGCGGGCCTGATATAATCACAGGATCCTTATTAGAGGGAAGCGGATCA
GTGAGGAGATACGGTGATGGCGACGGAGGTGATGGTGACAGAAGCAAGAAGTTGGATTAA
TGCGATGAAGAAGGGGTCACAGGCCAAGAAATGCAGGCAGCCTCCAGATGCTGGAAGAGG
CAAGGAGATGGCTTCTTCCTTCAGAACTTCCAGAAGGAACCAGCCTGCTGACACCTTGAC
TTTAGCCCAGTTAGACAGATTTAGTCTGACTACCAGAACTGTAAGAGAATAAATTTGTGT
TGTTTTAAGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACAGCCCCGGCTTCCTCCTTCGGCTCCCTCGACACCGCAGCCACACCTCGGCTCTGGC
CAACATGCGATGTCCTAGCAGGCCCCCCCTCGCCTCCCTGGCACCCCCAGCCCACCCCAG
ACCCTTCCCTGTGTCCCCTGGTTGCAGCCAGCAAGATTGGGCTTCGGGCAGGCACCCTGT
GGCCTAGGGGGCCTCTCGGCCGGCCCCGTACTTCTCACCAGCACTTAGATTTAGACTGGC
CAGCCGACTTGCGAGGAGACGTGGCAGTGAGTTGGAAGGGGAGGGCTGGTGGGGCCTAGA
CCTTAGAGATACGAGGCCAGCAAGGACCCGACTGAACCCAAAGCAGAAAACCCCCAGCCC
TTTTTCTCCCAATCACTGAAACCCCAGAAGGGCGTAGCCATTCTGCAGCCTCGTTGTAGC
AGGCTGAGGAGTGGCCCCCAGAATGGCCATGTTTGAATCCCAAGAAGCTGTGGACATTAC
CTTCGATGACAAAAGGGACTTTGCAGATGTAATTAAGGGTCTTCAGACAAGGTGACTGTC
CTGGATTGTCTAGGCGGGCCTGATATAATCACAGGATCCTTATTAGAGGGAAGCGGATCA
GTGAGGAGATACGGTGATGGCGACGGAGGTGATGGTGACAGAAGCAAGAAGTTGGATTAA
TGCGATGAAGAAGGGGTCACAGGCCAAGAAATGCAGGCAGCCTCCAGATGCTGGAAGAGG
CAAGGAGATGGCTTCTTCCTTCAGAACTTCCAGAAGGAACCAGCCTGCTGACACCTTGAC
TTTAGCCCAGTTAGACAGATTTAGTCTGACTACCAGAACTGTAAGAGAATAAATTTGTGT
TGTTTTAAGCCT

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               39-140, - strand, RNAz p=0.554677
               

               
               265-367, - strand, RNAz p=0.938439
               

               
               273-410, - strand, RNAz p=0.999992

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-140, - strand, RNAz p=0.554677
               

               
               265-367, - strand, RNAz p=0.938439
               

               
               273-410, - strand, RNAz p=0.999992

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               323-460, - strand, RNAmicro p=0.999407

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               323-460, - strand, RNAmicro p=0.999407

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               1-735, gnl|bosTau2|chr5 (67155036-67155792)
               

               
               1-735, gnl|canFam2|chr10 (29878372-29877853)
               

               
               1-735, gnl|dasNov1|scaffold_9137 (43108-42586)
               

               
               1-735, gnl|hg17|chr22 (36551444-36551974)
               

               
               1-735, gnl|Hg17|chr22 (36552238-36551527)
               

               
               1-735, gnl|loxAfr1|scaffold_26966 (3818-4343)
               

               
               1-735, gnl|mm7|chr15 (79136099-79136575)
               

               
               1-735, gnl|oryCun1|scaffold_159006 (12203-11693)
               

               
               1-735, gnl|panTro1|chr23 (36731515-36732043)
               

               
               1-735, gnl|rheMac2|chr10 (81755183-81755706)
               

               
               1-735, gnl|rn3|chr7 (117060425-117060901)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-735, gnl|bosTau2|chr5 (67155036-67155792)
               

               
               1-735, gnl|canFam2|chr10 (29878372-29877853)
               

               
               1-735, gnl|dasNov1|scaffold_9137 (43108-42586)
               

               
               1-735, gnl|hg17|chr22 (36551444-36551974)
               

               
               1-735, gnl|Hg17|chr22 (36552238-36551527)
               

               
               1-735, gnl|loxAfr1|scaffold_26966 (3818-4343)
               

               
               1-735, gnl|mm7|chr15 (79136099-79136575)
               

               
               1-735, gnl|oryCun1|scaffold_159006 (12203-11693)
               

               
               1-735, gnl|panTro1|chr23 (36731515-36732043)
               

               
               1-735, gnl|rheMac2|chr10 (81755183-81755706)
               

               
               1-735, gnl|rn3|chr7 (117060425-117060901)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               cst (0.140036)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               cst (0.140036)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)

	39-140, - strand, RNAz p=0.554677
	265-367, - strand, RNAz p=0.938439
	273-410, - strand, RNAz p=0.999992

	1-735, gnl\|bosTau2\|chr5 (67155036-67155792)
	1-735, gnl\|canFam2\|chr10 (29878372-29877853)
	1-735, gnl\|dasNov1\|scaffold_9137 (43108-42586)
	1-735, gnl\|hg17\|chr22 (36551444-36551974)
	1-735, gnl\|Hg17\|chr22 (36552238-36551527)
	1-735, gnl\|loxAfr1\|scaffold_26966 (3818-4343)
	1-735, gnl\|mm7\|chr15 (79136099-79136575)
	1-735, gnl\|oryCun1\|scaffold_159006 (12203-11693)
	1-735, gnl\|panTro1\|chr23 (36731515-36732043)
	1-735, gnl\|rheMac2\|chr10 (81755183-81755706)
	1-735, gnl\|rn3\|chr7 (117060425-117060901)

	fhi (0.169578)
	cje (0.165235)
	cki (0.165235)
	cst (0.140036)
	eep (0.122564)
	cly (0.120642)
	pgl (0.118483)
	ecc (0.115035)