Ss1.1-Pig4-TMW8028P03.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGAGGCTACCGCCACATCCTCCTCCTCCTTCTCCTCCTCCCGGTCCAGACGAGCCGAGC TGGGTCGTGGCCGAGCCGAGGGCTCTGAGGGCGCAGGCGGAGCGGGGCACGGAGCCATGG CGCACCAGACCGGCATCCACGCCACCGAAGAGCTGAAGGAGTTCTTTGCCAAGGCACGGG CTGGCTCTGTGCGGCTCATCAAAGTCGTCATTGAGGACGAGCAGCTCGTGCTGGGTGCCT CACGGGAACTGATGGGCTGCTGGGACCAGGACTATGACAGGGCCGTGCTGCCGCTGCTGG ATGCCCAGCAGCCCTGCTACCTGCTCTACCGCCTGGACACGCAGAACGCGCAGGGCTTCG AATGGCTCTTCCTCGCCTGGTCACCTGATAATTCCCCTGTACGGTTGAAGATGCTGTATG CAGCCACACGGGCCACAGTGAAGAAGGAGTTTGGGGGCGGCCACATCAAGGATGAGCTCT TTGGGACTGTGAAGGATGACCTCTCCTTTGCTGGGTACCAGAAGCATCTGTCGTCCTGTG CAGCACCCGCCCCGCTGACCTCAGCCGAGAGAGAACTTCAGCAGATCCGTATTAACGAGG TGAAGACAGAGATCAGTGTGGAGAGCAAACACCAGACCCTACAGGGCCTGGCCTTCCCTC TGCAGCCTCAGGCCCAGCGGGCACTTCAGCAGCTCAGACAGAAGATGATCAACTACATCC AGCTGAAGCTGGACCTGGAGCGAGAGACCATTGAGCTGGTGCACACTGAGCCCACGGATG TGGCCCAGCTGCCGTCTCGAGTGCCCCGCGATGCTGCTCGCTACCACTTCTTCCTCTACA AGCACACCCATGAGGGTGACCCCTTGGAGTCTGTGGTGTTCATCTACTCGATGCCGGGCT ACAAGTGCAGCATCAAGGAGCGCATGCTCTACTCCAGCTGCAAGAGCCGCCTCCTCGACT CCGTGGAGCAGGACTTCCAGCTGGAGATCGCCAAGAAGATTGAGATCGGCGATGGGGCAG AGCTGACGGCCGAGTTCCTCTACGACGAGGTGCACCCCAAGCAGCACGCCTTCAAGCAGG CCTTCGCCAAGCCCAAGGGCCCCGGAGGCAAACGGGGCCACAAACGCCTCATCCGTGGCC CTGGCGAGAATGGGGATGACAGCTAGGTGACAGGAGCTGAGCCCCACCGGCGTGTGGACT GTGGGGCCGCCCCTACCCCACCCCTACCTTCACCCCCACGGCCACCTCCCTCCTTTCCAG CCTGGGCTCCAGGTGGGGGTTGCCTCCTGTGGGGCAGGAGAGCCGGTGACTAAACATTCT TGCAGCTTCCGAGGGCCACTGGGCTGGCATTTTGTGACTCTCCCCCACTGTTGTCCCCTG CTCTCATCCATGTGTCCAGGGTGTCTGGGGGCCCTGCCCAGCTGGCTTAAGGGGCTGGCT GGGGGGCCTGGCATGAACCTGGCCTCCAGGGAACTGAGACCAGGGTCCCAGCACAGCCCA GAAGGCTTTGGCCATGAGGGGTGAGGTCATTTGGGGCTGAACCAGGGGGTCACTGCAGGA CAAGATGGTTGAATGCTGTATTTTTTAAAGAATAAAATATTTTTAAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGAGGCTACCGCCACATCCTCCTCCTCCTTCTCCTCCTCCCGGTCCAGACGAGCCGAGC TGGGTCGTGGCCGAGCCGAGGGCTCTGAGGGCGCAGGCGGAGCGGGGCACGGAGCCATGG CGCACCAGACCGGCATCCACGCCACCGAAGAGCTGAAGGAGTTCTTTGCCAAGGCACGGG CTGGCTCTGTGCGGCTCATCAAAGTCGTCATTGAGGACGAGCAGCTCGTGCTGGGTGCCT CACGGGAACTGATGGGCTGCTGGGACCAGGACTATGACAGGGCCGTGCTGCCGCTGCTGG ATGCCCAGCAGCCCTGCTACCTGCTCTACCGCCTGGACACGCAGAACGCGCAGGGCTTCG AATGGCTCTTCCTCGCCTGGTCACCTGATAATTCCCCTGTACGGTTGAAGATGCTGTATG CAGCCACACGGGCCACAGTGAAGAAGGAGTTTGGGGGCGGCCACATCAAGGATGAGCTCT TTGGGACTGTGAAGGATGACCTCTCCTTTGCTGGGTACCAGAAGCATCTGTCGTCCTGTG CAGCACCCGCCCCGCTGACCTCAGCCGAGAGAGAACTTCAGCAGATCCGTATTAACGAGG TGAAGACAGAGATCAGTGTGGAGAGCAAACACCAGACCCTACAGGGCCTGGCCTTCCCTC TGCAGCCTCAGGCCCAGCGGGCACTTCAGCAGCTCAGACAGAAGATGATCAACTACATCC AGCTGAAGCTGGACCTGGAGCGAGAGACCATTGAGCTGGTGCACACTGAGCCCACGGATG TGGCCCAGCTGCCGTCTCGAGTGCCCCGCGATGCTGCTCGCTACCACTTCTTCCTCTACA AGCACACCCATGAGGGTGACCCCTTGGAGTCTGTGGTGTTCATCTACTCGATGCCGGGCT ACAAGTGCAGCATCAAGGAGCGCATGCTCTACTCCAGCTGCAAGAGCCGCCTCCTCGACT CCGTGGAGCAGGACTTCCAGCTGGAGATCGCCAAGAAGATTGAGATCGGCGATGGGGCAG AGCTGACGGCCGAGTTCCTCTACGACGAGGTGCACCCCAAGCAGCACGCCTTCAAGCAGG CCTTCGCCAAGCCCAAGGGCCCCGGAGGCAAACGGGGCCACAAACGCCTCATCCGTGGCC CTGGCGAGAATGGGGATGACAGCTAGGTGACAGGAGCTGAGCCCCACCGGCGTGTGGACT GTGGGGCCGCCCCTACCCCACCCCTACCTTCACCCCCACGGCCACCTCCCTCCTTTCCAG CCTGGGCTCCAGGTGGGGGTTGCCTCCTGTGGGGCAGGAGAGCCGGTGACTAAACATTCT TGCAGCTTCCGAGGGCCACTGGGCTGGCATTTTGTGACTCTCCCCCACTGTTGTCCCCTG CTCTCATCCATGTGTCCAGGGTGTCTGGGGGCCCTGCCCAGCTGGCTTAAGGGGCTGGCT GGGGGGCCTGGCATGAACCTGGCCTCCAGGGAACTGAGACCAGGGTCCCAGCACAGCCCA GAAGGCTTTGGCCATGAGGGGTGAGGTCATTTGGGGCTGAACCAGGGGGTCACTGCAGGA CAAGATGGTTGAATGCTGTATTTTTTAAAGAATAAAATATTTTTAAAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 1036-1155, - strand, RNAz p=0.666797 | |
| 1194-1311, - strand, RNAz p=0.864282 | |
| 1392-1549, + strand, RNAz p=0.994253 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1036-1155, - strand, RNAz p=0.666797 | |
| 1194-1311, - strand, RNAz p=0.864282 | |
| 1392-1549, + strand, RNAz p=0.994253 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_007284, + |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 5-141, gnl|bosTau2|chr22 (36808237-36808101) | |
| 5-141, gnl|Hg17|chr3 (52248176-52248048) | |
| 5-141, gnl|Mm7|chr9 (105932600-105932732) | |
| 219-400, gnl|bosTau2|chr22 (36802388-36802207) | |
| 219-400, gnl|canFam2|chr20 (40531966-40531844) | |
| 219-400, gnl|danRer3|chr6 (23401292-23401176) | |
| 219-400, gnl|dasNov1|scaffold_41857 (13330-13223) | |
| 219-400, gnl|echTel1|scaffold_299796 (196-74) | |
| 219-400, gnl|fr1|chrUn (178180118-178180233) | |
| 219-400, gnl|galGal2|chr12 (2620770-2620892) | |
| 219-400, gnl|hg17|chr3 (52240989-52241111) | |
| 219-400, gnl|Hg17|chr3 (52241179-52240998) | |
| 219-400, gnl|loxAfr1|scaffold_36367 (4316-4195) | |
| 219-400, gnl|mm7|chr9 (105941349-105941236) | |
| 219-400, gnl|Mm7|chr9 (105941166-105941347) | |
| 219-400, gnl|monDom2|scaffold_5 (71051827-71051705) | |
| 219-400, gnl|oryCun1|scaffold_196786 (28233-28120) | |
| 219-400, gnl|panTro1|chr2 (53854958-53855080) | |
| 219-400, gnl|rheMac2|chr2 (84162502-84162380) | |
| 219-400, gnl|rn3|chr3 (99457217-99457338) | |
| 219-400, gnl|tetNig1|chr11 (4389500-4389378) | |
| 219-400, gnl|xenTro1|scaffold_1059 (42821-42700) | |
| 486-602, gnl|bosTau2|chr22 (36801499-36801383) | |
| 486-602, gnl|canFam2|chr20 (40532751-40532622) | |
| 486-602, gnl|danRer3|chr11 (17578981-17579100) | |
| 486-602, gnl|dasNov1|scaffold_209923 (595-478) | |
| 486-602, gnl|echTel1|scaffold_299796 (1127-1002) | |
| 486-602, gnl|fr1|chrUn (178179599-178179728) | |
| 486-602, gnl|galGal2|chr12 (2619333-2619450) | |
| 486-602, gnl|hg17|chr3 (52240173-52240296) | |
| 486-602, gnl|Hg17|chr3 (52240303-52240180) | |
| 486-602, gnl|loxAfr1|scaffold_36367 (5150-5018) | |
| 486-602, gnl|mm7|chr9 (105942288-105942173) | |
| 486-602, gnl|Mm7|chr9 (105942168-105942287) | |
| 486-602, gnl|monDom2|scaffold_5 (71055874-71055789) | |
| 486-602, gnl|oryCun1|scaffold_196786 (28948-28833) | |
| 486-602, gnl|panTro1|chr2 (53854142-53854265) | |
| 486-602, gnl|rheMac2|chr2 (84163306-84163182) | |
| 486-602, gnl|rn3|chr3 (99457040-99457135) | |
| 486-602, gnl|tetNig1|chr11 (4389966-4389843) | |
| 486-602, gnl|xenTro1|scaffold_1059 (44860-44745) | |
| 722-876, gnl|bosTau2|chr22 (36800489-36800335) | |
| 722-876, gnl|Hg17|chr3 (52239130-52238976) | |
| 722-876, gnl|Mm7|chr9 (105943545-105943699) | |
| 997-1608, gnl|bosTau2|chr22 (36799667-36799073) | |
| 997-1608, gnl|Hg17|chr3 (52238259-52237671) | |
| 997-1608, gnl|Mm7|chr9 (105944274-105944834) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-141, gnl|bosTau2|chr22 (36808237-36808101) | |
| 5-141, gnl|Hg17|chr3 (52248176-52248048) | |
| 5-141, gnl|Mm7|chr9 (105932600-105932732) | |
| 219-400, gnl|bosTau2|chr22 (36802388-36802207) | |
| 219-400, gnl|canFam2|chr20 (40531966-40531844) | |
| 219-400, gnl|danRer3|chr6 (23401292-23401176) | |
| 219-400, gnl|dasNov1|scaffold_41857 (13330-13223) | |
| 219-400, gnl|echTel1|scaffold_299796 (196-74) | |
| 219-400, gnl|fr1|chrUn (178180118-178180233) | |
| 219-400, gnl|galGal2|chr12 (2620770-2620892) | |
| 219-400, gnl|hg17|chr3 (52240989-52241111) | |
| 219-400, gnl|Hg17|chr3 (52241179-52240998) | |
| 219-400, gnl|loxAfr1|scaffold_36367 (4316-4195) | |
| 219-400, gnl|mm7|chr9 (105941349-105941236) | |
| 219-400, gnl|Mm7|chr9 (105941166-105941347) | |
| 219-400, gnl|monDom2|scaffold_5 (71051827-71051705) | |
| 219-400, gnl|oryCun1|scaffold_196786 (28233-28120) | |
| 219-400, gnl|panTro1|chr2 (53854958-53855080) | |
| 219-400, gnl|rheMac2|chr2 (84162502-84162380) | |
| 219-400, gnl|rn3|chr3 (99457217-99457338) | |
| 219-400, gnl|tetNig1|chr11 (4389500-4389378) | |
| 219-400, gnl|xenTro1|scaffold_1059 (42821-42700) | |
| 486-602, gnl|bosTau2|chr22 (36801499-36801383) | |
| 486-602, gnl|canFam2|chr20 (40532751-40532622) | |
| 486-602, gnl|danRer3|chr11 (17578981-17579100) | |
| 486-602, gnl|dasNov1|scaffold_209923 (595-478) | |
| 486-602, gnl|echTel1|scaffold_299796 (1127-1002) | |
| 486-602, gnl|fr1|chrUn (178179599-178179728) | |
| 486-602, gnl|galGal2|chr12 (2619333-2619450) | |
| 486-602, gnl|hg17|chr3 (52240173-52240296) | |
| 486-602, gnl|Hg17|chr3 (52240303-52240180) | |
| 486-602, gnl|loxAfr1|scaffold_36367 (5150-5018) | |
| 486-602, gnl|mm7|chr9 (105942288-105942173) | |
| 486-602, gnl|Mm7|chr9 (105942168-105942287) | |
| 486-602, gnl|monDom2|scaffold_5 (71055874-71055789) | |
| 486-602, gnl|oryCun1|scaffold_196786 (28948-28833) | |
| 486-602, gnl|panTro1|chr2 (53854142-53854265) | |
| 486-602, gnl|rheMac2|chr2 (84163306-84163182) | |
| 486-602, gnl|rn3|chr3 (99457040-99457135) | |
| 486-602, gnl|tetNig1|chr11 (4389966-4389843) | |
| 486-602, gnl|xenTro1|scaffold_1059 (44860-44745) | |
| 722-876, gnl|bosTau2|chr22 (36800489-36800335) | |
| 722-876, gnl|Hg17|chr3 (52239130-52238976) | |
| 722-876, gnl|Mm7|chr9 (105943545-105943699) | |
| 997-1608, gnl|bosTau2|chr22 (36799667-36799073) | |
| 997-1608, gnl|Hg17|chr3 (52238259-52237671) | |
| 997-1608, gnl|Mm7|chr9 (105944274-105944834) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| nco (0.485201) | |
| jca (0.34188) | |
| eep (0.245128) | |
| ece (0.229305) | |
| eye (0.170503) | |
| nje (0.16592) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| cly (0.120642) | |
| eru (0.120048) | |
| clu (0.119646) | |
| jej (0.0989218) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.485201) | |
| jca (0.34188) | |
| eep (0.245128) | |
| ece (0.229305) | |
| eye (0.170503) | |
| nje (0.16592) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| cly (0.120642) | |
| eru (0.120048) | |
| clu (0.119646) | |
| jej (0.0989218) |