Non-Coding RNA Search

Ss1.1-Pig4-TMW8028P06.3

Sequence:


               
               GAAAATAATTCCTTGTGGGAGCTGATCCACACGAAGTCGGAAGTAGAAGGACGGCCAGAA
ACCATCTTTCAGTTGTGCTGCAGTGACAACGAAAGCAAAACCAACATTGTCAAAGTGATT
CGATCTATTCTGCGGGAAAACTTCAGGCGTCACATAAAGTGTGAATTGCCTCTGGAGAAA
GCATGTAAGGACCGCCTCGTACCCCTGAAGAACCGCGTTCCTGTCTCAGCCAAATTAGCT
TCATCCAGGTCCTTAAGAGTGCTCAAGAATTCTTCCAGCAGCGAGTGGCCCGGAGAGCCG
GGCAAGAGCAGCTCGCTGGACTCGGATGAGGGCAGCCTGAGCAGCGGCACCCAGAGCAGT
GGTTGCCCCCCGACCGGGAGCCCACACGATGCCCAGAGACAGCCCCACGCCGGCCTGGCG
GACCTCTCTGACAGCCTCATCAAGGAGAGCGACATCCTGAGCGACGACGAGGACGACTAC
CATCAGGCTCGGAGGCAGGGCAGCCCCACCAAAGACATCGAGCTTCAGTTCCAGAGACTG
AGGATCTCCGAGGACCCCGACGCCCATCCGGCCGAGCAGCAGCCCAGCAAGGACAGCCCG
CAGCCCAAGCTGGTCCGGGGGCACTTCTGCGCCATCAAACGGAAAGCCAACAGCACCAAG
AGGGACAGGGGAACTCTGCTGAAGGCGCAGACTCGTCACCAGTCCCTGGACAGTCAACCT
GAAAGTGCCAACCTTGACTTCAGCTCTGTCCTCGAGCGAGAATTCAGCGTCCAGAGCTTA
ACATCGGTGGTCAACGAGGAGTGTTTTTACGAGACAGAGAGCCACGGCAAGTCCTAGTAC
AGTTCCAATCCAGAGATGGCGCCACTTTTAAACTGGTGGTGAAATGGAAATTGCAGAAAA
ACTGTTCATGATTGGGTTCTGTGCAGTATACATTTTCCCCCAAGTAGCTGTAAAGATTTA
AGTTATTTTAATTTATTGTGGATCAGAAAACTAGATTAAACTGATCAGAATTTGTAAATG
ACTTACTTTACTTTATATCCCTTTTGAGCAGGTATCAAAATGACTTCGAATCCTAAACAT
CAAACTGAATTCTAATTAATTTATGTGGAAAAAGGTAGGAGGTTGTGATCAATAGCTTTT
AAAAGCTCTCTCTCTTTTTTTTTCCAATTCTCTGGGCATTTTCTTTGAGCTGTTAGATTT
CGCTTTATTTAAAGCGTATTTAAATTATTCTAATGTGGGTTAGGGGTTACCCTGTGCAGA
TATTTCATTTTTGTAAGGTTGTAACAGATGCTGTTTATACTAAACATGTCATATCTATGC
AGTATGTATATTAAAAGAAAGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAATAATTCCTTGTGGGAGCTGATCCACACGAAGTCGGAAGTAGAAGGACGGCCAGAA
ACCATCTTTCAGTTGTGCTGCAGTGACAACGAAAGCAAAACCAACATTGTCAAAGTGATT
CGATCTATTCTGCGGGAAAACTTCAGGCGTCACATAAAGTGTGAATTGCCTCTGGAGAAA
GCATGTAAGGACCGCCTCGTACCCCTGAAGAACCGCGTTCCTGTCTCAGCCAAATTAGCT
TCATCCAGGTCCTTAAGAGTGCTCAAGAATTCTTCCAGCAGCGAGTGGCCCGGAGAGCCG
GGCAAGAGCAGCTCGCTGGACTCGGATGAGGGCAGCCTGAGCAGCGGCACCCAGAGCAGT
GGTTGCCCCCCGACCGGGAGCCCACACGATGCCCAGAGACAGCCCCACGCCGGCCTGGCG
GACCTCTCTGACAGCCTCATCAAGGAGAGCGACATCCTGAGCGACGACGAGGACGACTAC
CATCAGGCTCGGAGGCAGGGCAGCCCCACCAAAGACATCGAGCTTCAGTTCCAGAGACTG
AGGATCTCCGAGGACCCCGACGCCCATCCGGCCGAGCAGCAGCCCAGCAAGGACAGCCCG
CAGCCCAAGCTGGTCCGGGGGCACTTCTGCGCCATCAAACGGAAAGCCAACAGCACCAAG
AGGGACAGGGGAACTCTGCTGAAGGCGCAGACTCGTCACCAGTCCCTGGACAGTCAACCT
GAAAGTGCCAACCTTGACTTCAGCTCTGTCCTCGAGCGAGAATTCAGCGTCCAGAGCTTA
ACATCGGTGGTCAACGAGGAGTGTTTTTACGAGACAGAGAGCCACGGCAAGTCCTAGTAC
AGTTCCAATCCAGAGATGGCGCCACTTTTAAACTGGTGGTGAAATGGAAATTGCAGAAAA
ACTGTTCATGATTGGGTTCTGTGCAGTATACATTTTCCCCCAAGTAGCTGTAAAGATTTA
AGTTATTTTAATTTATTGTGGATCAGAAAACTAGATTAAACTGATCAGAATTTGTAAATG
ACTTACTTTACTTTATATCCCTTTTGAGCAGGTATCAAAATGACTTCGAATCCTAAACAT
CAAACTGAATTCTAATTAATTTATGTGGAAAAAGGTAGGAGGTTGTGATCAATAGCTTTT
AAAAGCTCTCTCTCTTTTTTTTTCCAATTCTCTGGGCATTTTCTTTGAGCTGTTAGATTT
CGCTTTATTTAAAGCGTATTTAAATTATTCTAATGTGGGTTAGGGGTTACCCTGTGCAGA
TATTTCATTTTTGTAAGGTTGTAACAGATGCTGTTTATACTAAACATGTCATATCTATGC
AGTATGTATATTAAAAGAAAGCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61853078|ref|XP_581867.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61853078|ref|XP_581867.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               597-716, - strand, RNAz p=0.717988

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               597-716, - strand, RNAz p=0.717988

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               237-1344, gnl|bosTau2|chr9 (53933657-53932570)
               

               
               237-1344, gnl|Hg17|chr6 (155669729-155670901)
               

               
               237-1344, gnl|Mm7|chr17 (3517852-3519131)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               237-1344, gnl|bosTau2|chr9 (53933657-53932570)
               

               
               237-1344, gnl|Hg17|chr6 (155669729-155670901)
               

               
               237-1344, gnl|Mm7|chr17 (3517852-3519131)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fco (0.471624)
               

               
               ecc (0.23007)
               

               
               ski (0.146735)
               

               
               pla (0.133672)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.471624)
               

               
               ecc (0.23007)
               

               
               ski (0.146735)
               

               
               pla (0.133672)

	237-1344, gnl\|bosTau2\|chr9 (53933657-53932570)
	237-1344, gnl\|Hg17\|chr6 (155669729-155670901)
	237-1344, gnl\|Mm7\|chr17 (3517852-3519131)