Ss1.1-Pig4-TMW8028P09.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACGGCTGCCTCGCTCCCGGAAGTGGAGGGTCTGCAAGAAGAGCACCGCTGGGTCTGGGT GCCAAGAGGCAGAAACGCTCGCGGAGCTAGCCCGTTGGACCCCGATCGCCATGTCGGCCT TCGACACCAACCCCTTCGCGGACCCAGTGGACGTAAACCCTTTCCAGGATCCCTCTGTGA CCCAGCTGACCAATGCTCCACAAGGAGGCCTGGCTGAATTCAACCCCTTCTCCGAGACAA ATGCAGCGACAACGGTTCCTGTCACACAGCTTCCCGGGCCCTCGCAGCCAGCAGTTCTCC AGCCCTCAGTAGAGCCAACTCAGCCAACCCCCCAGGCTGTGGCCTCTGCAGCTCAGGCAA GCCTGCTCCGGCAGCAGGAAGAACTGGACAGAAAAGCGGCTGAGCTGGAACGCAAGGAGC GGGAGCTGCAGAACACTGTGGCCAACTTACATGTGAGAGAGAACAACTGGCCACCCCTGC CCATATGGTGCCCCATCAAACCCTGCTTCTATCAGGATTTCTCCACAGAGATCCCTGCTG ACTACCAGCGGATATGCAAGATGCTCTACTATCTCTGGATGTTGCATTCAGTGACTCTGT TTCTGAACCTGCTTGCCTGCCTGGCCTGGTTCTTAGTTGACACCAGCAGGGGAGTAGACT TTGGCCTCTCGATCCTGTGGTTTGTGATCTTCACCCCCTGTGCCTTCCTCTGTTGGTACC GACCCATCTATAAGGCCTTTAGGTCCGACAACTCCTTCAGCTTCTTCGTGTTCTTCTTTG TGTTTTTTTGTCAAATAGGGATCTACATCATCCAGTTGGTCGGCATCCCTAGCTTGGGGG ACAGTGGTTGGATCGCAGCCCTGTCCACACTGAAGGAAGACTTGGCCGTGTCAATCATCA TGATGGTGGTGGCTGGCTTCTTCACCCTCTGTGCCGTGCTCTCACTCTTTCTCCTGAAGC GGGTTCACTCCCTGTACCGCCGGACTGGGGCCAGCTTCCAGCAGGCCCAAGAGGAGTTTT CCCAGGGCATCTTCAGCAGCAGGACCTTCCAGAGCGCCGCCTCATCTGCTGCCCGAGGAG CCTTCCAGGGGAATTAGTCCTCTTGCCTCTCCTCCCTTTGGCCCAGCCCTTTCTCTCAAC CTGCCTTCTGAGCTGCACTTTCTGTGGGTGCCTTACGCAGTGGTTATGCCCAGCACAGAC CTGGGGAGGGTCTTGCCCGTGTTTCTTCCTCCTTCCTCAGCAGCCAGCTGTCCCTTCCAC TTGAGGAAAGGGGAGGGAGGGACAGGGACTTTTTTTTACACAGGAGAAAAGAGGAAAACA AAGCTATCATTCCTTCTCTGGTGGTGGTTTGGTAGGGTTTTTGGTCCCTCTGGAGACAGT GGGACTGAAGTTCTCTTCTACACACACACGCACACGCGCACACACACACGTACACATTTG GGATCGCCAGCTGCCCTGGGCCCACCACAGCTGGAGTTTTCTTTCTGTCGGGGTCCTGAG ACACCACTCTTACCTGAGCAGGCCTGGCCTGAATCTGGCTCCACAGGCCCGCTCTTCCTT CCTAGCCAGGCTGAGGAGGTCTCCTAAGGGCTCCCCTTTAGATGAGCTGAAGTCTGGGCT CTGTTCCCCAGGTCAGTCTCGGGTGGTCTTTGGGCTTCCAGAGCCTCTGGCCTGGTTGCT CCAGCCTTACGTTTCTCACAGTTTCACAACCCTTTAGACCCGTTCCCTCCTGGTATGGGC AGTACCCTCTGGGGTGCTCCTTGAACCCTTTCCTCTTTAGACTTACTGAATGTGCAATGG GGTTGGTTGGGATTTGGGGATGGGGAGAGCTCGAGGACACTGACCCCAAGTTGTCCTGAC CAGCCTTTGGCAGTCTTCTAGGAGAGTGGGTCGCACTGTTCTGGTGTGGTTTGTTTTTGG TCCTGTTTGTTTTGATTTCCTCTCTTCCTGAGGGACAGCTGCCCTTTACCTTGCCCCCCA CCCCCCGCATCAGCAATATCTAGCTTGTATGACTCTTAGGGAGGGCAGGGGGAATCAGTC CAGAAATGCATCCTTCAGACTGGACTGATGAGCCACCTTTTTGAGAGTTCCAGACTAATC CTCCAGGGTTCCTCCCATACTTCAAGTAGAGACTAGGTCACCTTCTTCTAGTCCTGGGGA TTTCCCAGGACATGTGTCACTGTGATGGGTACCTAGTAGTTCAGAGTTAAAACCTGTACC GTGTCCACCACAGGTGGTACAAGTGGGTGTGTGGACTGAGGGGACATCTCAAAAAACTGG CTTGCCTTAGGTCTCTAGGTCCTGGGCCCATCTCAGGCAGCCCACAGGATGCCACCCCAT ACAGCCCCAGAGCCACTGGATGATAATGTCAGTGACGACGGTTTTGTAAACTCCTTTCTG GTATTTTTTTCTCCATGTAAAAATGTATATGTTATGTCTCAATTTTTGTCCTTAAATAAA ACAAGACATTTTCAGACAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACGGCTGCCTCGCTCCCGGAAGTGGAGGGTCTGCAAGAAGAGCACCGCTGGGTCTGGGT GCCAAGAGGCAGAAACGCTCGCGGAGCTAGCCCGTTGGACCCCGATCGCCATGTCGGCCT TCGACACCAACCCCTTCGCGGACCCAGTGGACGTAAACCCTTTCCAGGATCCCTCTGTGA CCCAGCTGACCAATGCTCCACAAGGAGGCCTGGCTGAATTCAACCCCTTCTCCGAGACAA ATGCAGCGACAACGGTTCCTGTCACACAGCTTCCCGGGCCCTCGCAGCCAGCAGTTCTCC AGCCCTCAGTAGAGCCAACTCAGCCAACCCCCCAGGCTGTGGCCTCTGCAGCTCAGGCAA GCCTGCTCCGGCAGCAGGAAGAACTGGACAGAAAAGCGGCTGAGCTGGAACGCAAGGAGC GGGAGCTGCAGAACACTGTGGCCAACTTACATGTGAGAGAGAACAACTGGCCACCCCTGC CCATATGGTGCCCCATCAAACCCTGCTTCTATCAGGATTTCTCCACAGAGATCCCTGCTG ACTACCAGCGGATATGCAAGATGCTCTACTATCTCTGGATGTTGCATTCAGTGACTCTGT TTCTGAACCTGCTTGCCTGCCTGGCCTGGTTCTTAGTTGACACCAGCAGGGGAGTAGACT TTGGCCTCTCGATCCTGTGGTTTGTGATCTTCACCCCCTGTGCCTTCCTCTGTTGGTACC GACCCATCTATAAGGCCTTTAGGTCCGACAACTCCTTCAGCTTCTTCGTGTTCTTCTTTG TGTTTTTTTGTCAAATAGGGATCTACATCATCCAGTTGGTCGGCATCCCTAGCTTGGGGG ACAGTGGTTGGATCGCAGCCCTGTCCACACTGAAGGAAGACTTGGCCGTGTCAATCATCA TGATGGTGGTGGCTGGCTTCTTCACCCTCTGTGCCGTGCTCTCACTCTTTCTCCTGAAGC GGGTTCACTCCCTGTACCGCCGGACTGGGGCCAGCTTCCAGCAGGCCCAAGAGGAGTTTT CCCAGGGCATCTTCAGCAGCAGGACCTTCCAGAGCGCCGCCTCATCTGCTGCCCGAGGAG CCTTCCAGGGGAATTAGTCCTCTTGCCTCTCCTCCCTTTGGCCCAGCCCTTTCTCTCAAC CTGCCTTCTGAGCTGCACTTTCTGTGGGTGCCTTACGCAGTGGTTATGCCCAGCACAGAC CTGGGGAGGGTCTTGCCCGTGTTTCTTCCTCCTTCCTCAGCAGCCAGCTGTCCCTTCCAC TTGAGGAAAGGGGAGGGAGGGACAGGGACTTTTTTTTACACAGGAGAAAAGAGGAAAACA AAGCTATCATTCCTTCTCTGGTGGTGGTTTGGTAGGGTTTTTGGTCCCTCTGGAGACAGT GGGACTGAAGTTCTCTTCTACACACACACGCACACGCGCACACACACACGTACACATTTG GGATCGCCAGCTGCCCTGGGCCCACCACAGCTGGAGTTTTCTTTCTGTCGGGGTCCTGAG ACACCACTCTTACCTGAGCAGGCCTGGCCTGAATCTGGCTCCACAGGCCCGCTCTTCCTT CCTAGCCAGGCTGAGGAGGTCTCCTAAGGGCTCCCCTTTAGATGAGCTGAAGTCTGGGCT CTGTTCCCCAGGTCAGTCTCGGGTGGTCTTTGGGCTTCCAGAGCCTCTGGCCTGGTTGCT CCAGCCTTACGTTTCTCACAGTTTCACAACCCTTTAGACCCGTTCCCTCCTGGTATGGGC AGTACCCTCTGGGGTGCTCCTTGAACCCTTTCCTCTTTAGACTTACTGAATGTGCAATGG GGTTGGTTGGGATTTGGGGATGGGGAGAGCTCGAGGACACTGACCCCAAGTTGTCCTGAC CAGCCTTTGGCAGTCTTCTAGGAGAGTGGGTCGCACTGTTCTGGTGTGGTTTGTTTTTGG TCCTGTTTGTTTTGATTTCCTCTCTTCCTGAGGGACAGCTGCCCTTTACCTTGCCCCCCA CCCCCCGCATCAGCAATATCTAGCTTGTATGACTCTTAGGGAGGGCAGGGGGAATCAGTC CAGAAATGCATCCTTCAGACTGGACTGATGAGCCACCTTTTTGAGAGTTCCAGACTAATC CTCCAGGGTTCCTCCCATACTTCAAGTAGAGACTAGGTCACCTTCTTCTAGTCCTGGGGA TTTCCCAGGACATGTGTCACTGTGATGGGTACCTAGTAGTTCAGAGTTAAAACCTGTACC GTGTCCACCACAGGTGGTACAAGTGGGTGTGTGGACTGAGGGGACATCTCAAAAAACTGG CTTGCCTTAGGTCTCTAGGTCCTGGGCCCATCTCAGGCAGCCCACAGGATGCCACCCCAT ACAGCCCCAGAGCCACTGGATGATAATGTCAGTGACGACGGTTTTGTAAACTCCTTTCTG GTATTTTTTTCTCCATGTAAAAATGTATATGTTATGTCTCAATTTTTGTCCTTAAATAAA ACAAGACATTTTCAGACAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 6 entry(ies) | More info |
| Predicted RNA structure(s): 6 entry(ies) | Help | Less info |
| Predicted RNA structure(s): 6 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_005697, + |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 1-210, gnl|bosTau2|chr21 (23049951-23049740) | |
| 1-210, gnl|Hg17|chr15 (72952757-72952537) | |
| 1-210, gnl|Mm7|chr9 (57588612-57588820) | |
| 235-336, gnl|bosTau2|chr21 (23036239-23036138) | |
| 235-336, gnl|canFam2|chr30 (40911339-40911443) | |
| 235-336, gnl|danRer3|chr3 (3571554-3571623) | |
| 235-336, gnl|dasNov1|scaffold_96158 (1644-1747) | |
| 235-336, gnl|echTel1|scaffold_261888 (4109-4026) | |
| 235-336, gnl|galGal2|chr10 (321111-321191) | |
| 235-336, gnl|hg17|chr15 (72933386-72933487) | |
| 235-336, gnl|Hg17|chr15 (72933515-72933414) | |
| 235-336, gnl|loxAfr1|scaffold_20577 (35050-35153) | |
| 235-336, gnl|mm7|chr9 (57605433-57605333) | |
| 235-336, gnl|Mm7|chr9 (57605303-57605404) | |
| 235-336, gnl|monDom2|scaffold_41 (2630807-2630739) | |
| 235-336, gnl|panTro1|chr16_random (22061345-22061446) | |
| 235-336, gnl|rheMac2|chr7 (53663601-53663702) | |
| 235-336, gnl|rn3|chr8 (61350679-61350579) | |
| 235-336, gnl|xenTro1|scaffold_287 (1186404-1186315) | |
| 453-582, gnl|bosTau2|chr21 (23033413-23033284) | |
| 453-582, gnl|canFam2|chr30 (40908809-40908970) | |
| 453-582, gnl|danRer3|chr1 (43254200-43254051) | |
| 453-582, gnl|dasNov1|scaffold_60895 (825-672) | |
| 453-582, gnl|echTel1|scaffold_261888 (6745-6578) | |
| 453-582, gnl|fr1|chrUn (111083767-111083602) | |
| 453-582, gnl|galGal2|chr10 (319596-319759) | |
| 453-582, gnl|hg17|chr15 (72930739-72930904) | |
| 453-582, gnl|Hg17|chr15 (72930876-72930747) | |
| 453-582, gnl|loxAfr1|scaffold_20577 (32242-32410) | |
| 453-582, gnl|mm7|chr9 (57608588-57608440) | |
| 453-582, gnl|Mm7|chr9 (57608449-57608578) | |
| 453-582, gnl|monDom2|scaffold_41 (2634389-2634237) | |
| 453-582, gnl|oryCun1|scaffold_140068 (4686-4852) | |
| 453-582, gnl|panTro1|chr16_random (22058700-22058865) | |
| 453-582, gnl|rheMac2|chr7 (53660948-53661110) | |
| 453-582, gnl|rn3|chr8 (61353835-61353687) | |
| 453-582, gnl|tetNig1|chrUn_random (25904588-25904741) | |
| 453-582, gnl|xenTro1|scaffold_287 (1189956-1189795) | |
| 583-744, gnl|bosTau2|chr21 (23032904-23032743) | |
| 583-744, gnl|canFam2|chr30 (40908009-40908166) | |
| 583-744, gnl|danRer3|chr3 (3568297-3568454) | |
| 583-744, gnl|dasNov1|scaffold_45490 (39767-39608) | |
| 583-744, gnl|echTel1|scaffold_312049 (131686-131532) | |
| 583-744, gnl|fr1|chrUn (111084131-111083974) | |
| 583-744, gnl|galGal2|chr10 (318919-319076) | |
| 583-744, gnl|hg17|chr15 (72929903-72930060) | |
| 583-744, gnl|Hg17|chr15 (72930067-72929906) | |
| 583-744, gnl|loxAfr1|scaffold_20577 (31440-31597) | |
| 583-744, gnl|mm7|chr9 (57609322-57609165) | |
| 583-744, gnl|Mm7|chr9 (57609156-57609317) | |
| 583-744, gnl|monDom2|scaffold_41 (2637137-2636980) | |
| 583-744, gnl|oryCun1|scaffold_140068 (4117-4274) | |
| 583-744, gnl|panTro1|chr16_random (22057869-22058026) | |
| 583-744, gnl|rheMac2|chr7 (53660113-53660270) | |
| 583-744, gnl|rn3|chr8 (61354569-61354412) | |
| 583-744, gnl|tetNig1|chrUn_random (25904334-25904491) | |
| 583-744, gnl|xenTro1|scaffold_287 (1192215-1192058) | |
| 959-2479, gnl|bosTau2|chr21 (23026150-23024612) | |
| 959-2479, gnl|Hg17|chr15 (72924615-72923124) | |
| 959-2479, gnl|Mm7|chr9 (57615084-57616462) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-210, gnl|bosTau2|chr21 (23049951-23049740) | |
| 1-210, gnl|Hg17|chr15 (72952757-72952537) | |
| 1-210, gnl|Mm7|chr9 (57588612-57588820) | |
| 235-336, gnl|bosTau2|chr21 (23036239-23036138) | |
| 235-336, gnl|canFam2|chr30 (40911339-40911443) | |
| 235-336, gnl|danRer3|chr3 (3571554-3571623) | |
| 235-336, gnl|dasNov1|scaffold_96158 (1644-1747) | |
| 235-336, gnl|echTel1|scaffold_261888 (4109-4026) | |
| 235-336, gnl|galGal2|chr10 (321111-321191) | |
| 235-336, gnl|hg17|chr15 (72933386-72933487) | |
| 235-336, gnl|Hg17|chr15 (72933515-72933414) | |
| 235-336, gnl|loxAfr1|scaffold_20577 (35050-35153) | |
| 235-336, gnl|mm7|chr9 (57605433-57605333) | |
| 235-336, gnl|Mm7|chr9 (57605303-57605404) | |
| 235-336, gnl|monDom2|scaffold_41 (2630807-2630739) | |
| 235-336, gnl|panTro1|chr16_random (22061345-22061446) | |
| 235-336, gnl|rheMac2|chr7 (53663601-53663702) | |
| 235-336, gnl|rn3|chr8 (61350679-61350579) | |
| 235-336, gnl|xenTro1|scaffold_287 (1186404-1186315) | |
| 453-582, gnl|bosTau2|chr21 (23033413-23033284) | |
| 453-582, gnl|canFam2|chr30 (40908809-40908970) | |
| 453-582, gnl|danRer3|chr1 (43254200-43254051) | |
| 453-582, gnl|dasNov1|scaffold_60895 (825-672) | |
| 453-582, gnl|echTel1|scaffold_261888 (6745-6578) | |
| 453-582, gnl|fr1|chrUn (111083767-111083602) | |
| 453-582, gnl|galGal2|chr10 (319596-319759) | |
| 453-582, gnl|hg17|chr15 (72930739-72930904) | |
| 453-582, gnl|Hg17|chr15 (72930876-72930747) | |
| 453-582, gnl|loxAfr1|scaffold_20577 (32242-32410) | |
| 453-582, gnl|mm7|chr9 (57608588-57608440) | |
| 453-582, gnl|Mm7|chr9 (57608449-57608578) | |
| 453-582, gnl|monDom2|scaffold_41 (2634389-2634237) | |
| 453-582, gnl|oryCun1|scaffold_140068 (4686-4852) | |
| 453-582, gnl|panTro1|chr16_random (22058700-22058865) | |
| 453-582, gnl|rheMac2|chr7 (53660948-53661110) | |
| 453-582, gnl|rn3|chr8 (61353835-61353687) | |
| 453-582, gnl|tetNig1|chrUn_random (25904588-25904741) | |
| 453-582, gnl|xenTro1|scaffold_287 (1189956-1189795) | |
| 583-744, gnl|bosTau2|chr21 (23032904-23032743) | |
| 583-744, gnl|canFam2|chr30 (40908009-40908166) | |
| 583-744, gnl|danRer3|chr3 (3568297-3568454) | |
| 583-744, gnl|dasNov1|scaffold_45490 (39767-39608) | |
| 583-744, gnl|echTel1|scaffold_312049 (131686-131532) | |
| 583-744, gnl|fr1|chrUn (111084131-111083974) | |
| 583-744, gnl|galGal2|chr10 (318919-319076) | |
| 583-744, gnl|hg17|chr15 (72929903-72930060) | |
| 583-744, gnl|Hg17|chr15 (72930067-72929906) | |
| 583-744, gnl|loxAfr1|scaffold_20577 (31440-31597) | |
| 583-744, gnl|mm7|chr9 (57609322-57609165) | |
| 583-744, gnl|Mm7|chr9 (57609156-57609317) | |
| 583-744, gnl|monDom2|scaffold_41 (2637137-2636980) | |
| 583-744, gnl|oryCun1|scaffold_140068 (4117-4274) | |
| 583-744, gnl|panTro1|chr16_random (22057869-22058026) | |
| 583-744, gnl|rheMac2|chr7 (53660113-53660270) | |
| 583-744, gnl|rn3|chr8 (61354569-61354412) | |
| 583-744, gnl|tetNig1|chrUn_random (25904334-25904491) | |
| 583-744, gnl|xenTro1|scaffold_287 (1192215-1192058) | |
| 959-2479, gnl|bosTau2|chr21 (23026150-23024612) | |
| 959-2479, gnl|Hg17|chr15 (72924615-72923124) | |
| 959-2479, gnl|Mm7|chr9 (57615084-57616462) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| clu (1.79469) | |
| cov (0.396458) | |
| ill (0.351185) | |
| hyp (0.285673) | |
| eep (0.245128) | |
| pgl (0.236967) | |
| eye (0.170503) | |
| cki (0.165235) | |
| cag (0.151194) | |
| fat (0.147427) | |
| che (0.136314) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cly (0.120642) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| cty (0.10408) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (1.79469) | |
| cov (0.396458) | |
| ill (0.351185) | |
| hyp (0.285673) | |
| eep (0.245128) | |
| pgl (0.236967) | |
| eye (0.170503) | |
| cki (0.165235) | |
| cag (0.151194) | |
| fat (0.147427) | |
| che (0.136314) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cly (0.120642) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| cty (0.10408) | |
| eje (0.0988338) | |
| ldo (0.0970026) |