Ss1.1-Pig4-TMW8028P11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TACCTCTCGGGGCTTCAGTGCTTCTTTCCTCTCTCGACTGGCTGTGGCTCCTGCTGGAGA ACTGTGACCAGGTCTGCGGGAACCGCACCTATGGCTTCCGTGCTGTCCTACGAAAACCTG GTCCACGCCGTGGCAGGAGCCGTGGGAAGCATGACGGCAATGACGGTATTTTTTCCCTTG GACACGGCTCGACTTCGACTTCAAGTTGATGAGAAAAGAAAGTCCAAAACGACACACATG GTGCTCCTGGAGATCATTAAAGAAGAAGGCCTCCTGGCACCATATCGAGGGTGGTTTCCA GTGATCTCCAGCCTCTGCTGCTCCAATTTTGTCTATTTCTACACTTTTAATAGCCTCAAA ACAGTCTGGGTCAAAGGTCAACATTCTACTACTGGAAAAGATCTGATAGTTGGCTTTGTT GCAGGCGTGGTGAACGTGCTGCTAACAACCCCACTTTGGGTGGTAAACACCAGACTGAAG CTGCAAGGGGCCAAATTTAGGAATGAAGACATTGTGCCGACCAACTACAGTGGTATCATT GATGCTTTTCACCAGATCATTCGTGATGAAGGGATCTCGGCTTTATGGAACGGCACGTTT CCCTCGTTGCTGTTGGTCTTCAATCCTGCCATCCAATTCATGTTCTATGAAGGTTTAAAA CGGCAGCTTTTAAAGAAACGAATGAAGCTTTCCTCTTTGGATGTGTTCGTCATTGGTGCG ATAGCCAAAGCCATTGCCACCACGGTCACCTATCCCATGCAGACAGTACAGTCAATTCTG AGGTTTGGACGTCACAGACTAAACCCAGAAAACAGAACACTGGGGAGTCTTCGGAACGTT CTCTATCTTCTGCACCAACGAGTGAGGCGTTTTGGAATAATGGGACTCTACAAAGGCCTT GAAGCCAAACTGCTACAGACAGTCCTCACTGCTGCTCTCATGTTCCTCGTTTATGAGAAA CTGACGGCTACCACCTTCATGGTCATGGGGCTGAAGAGGGCGAGCAAGCACTGAGAAATG CCTTCCACCGCCCAGCTCGGAGATGCTCAGGATGGGGGGTCCCTTCTGTGTGAAGAGAAG CGATTCTCCTCTTACTCCCTCCTCCCCCTGAGAACTTCACCCTCATTGGCTTGAAGTGTG TCTAAGGTTAAACAGGGAGTATAGCCAGCGTGAGCTATTACCAACTTGATTTTTGTGATG GGTGCTTGAATTTTGTGGGGAGATTGGACCAATGGCCACCTGAAAAGAAAATATTATTGA GAACCTAAAAGTGAAAGTTTATGCCGGTTTAATTGATTTTCTGGAGAGGAATAGACTGTT GCTCTCATGTAATATTTTCCAGTAAAAATGTTTCCTAAATGTATCAGCTGTTCTCTTTCC CTAGACCCTTCCCCACCCCAGGTTCTAGGACAAATTTGCTACTATATCGTATACTTTGTA TGTCTTCATGTTGGTATATGGGCATGGCTTTATTCTTGCTGGGCTTAAGAAAAGATGTCT TCTTTAGTATGTGAGCTATTTATTTTGTGGGGGAAATGAAAATTATTAATCCCAAATGAT TCTCTTATAAACTATTTGTAAACATCCCTTATTCTTCAGTATTTGACGTAATTAAAAAAT GCCTATTTTGAGTCAACCTTTTCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TACCTCTCGGGGCTTCAGTGCTTCTTTCCTCTCTCGACTGGCTGTGGCTCCTGCTGGAGA ACTGTGACCAGGTCTGCGGGAACCGCACCTATGGCTTCCGTGCTGTCCTACGAAAACCTG GTCCACGCCGTGGCAGGAGCCGTGGGAAGCATGACGGCAATGACGGTATTTTTTCCCTTG GACACGGCTCGACTTCGACTTCAAGTTGATGAGAAAAGAAAGTCCAAAACGACACACATG GTGCTCCTGGAGATCATTAAAGAAGAAGGCCTCCTGGCACCATATCGAGGGTGGTTTCCA GTGATCTCCAGCCTCTGCTGCTCCAATTTTGTCTATTTCTACACTTTTAATAGCCTCAAA ACAGTCTGGGTCAAAGGTCAACATTCTACTACTGGAAAAGATCTGATAGTTGGCTTTGTT GCAGGCGTGGTGAACGTGCTGCTAACAACCCCACTTTGGGTGGTAAACACCAGACTGAAG CTGCAAGGGGCCAAATTTAGGAATGAAGACATTGTGCCGACCAACTACAGTGGTATCATT GATGCTTTTCACCAGATCATTCGTGATGAAGGGATCTCGGCTTTATGGAACGGCACGTTT CCCTCGTTGCTGTTGGTCTTCAATCCTGCCATCCAATTCATGTTCTATGAAGGTTTAAAA CGGCAGCTTTTAAAGAAACGAATGAAGCTTTCCTCTTTGGATGTGTTCGTCATTGGTGCG ATAGCCAAAGCCATTGCCACCACGGTCACCTATCCCATGCAGACAGTACAGTCAATTCTG AGGTTTGGACGTCACAGACTAAACCCAGAAAACAGAACACTGGGGAGTCTTCGGAACGTT CTCTATCTTCTGCACCAACGAGTGAGGCGTTTTGGAATAATGGGACTCTACAAAGGCCTT GAAGCCAAACTGCTACAGACAGTCCTCACTGCTGCTCTCATGTTCCTCGTTTATGAGAAA CTGACGGCTACCACCTTCATGGTCATGGGGCTGAAGAGGGCGAGCAAGCACTGAGAAATG CCTTCCACCGCCCAGCTCGGAGATGCTCAGGATGGGGGGTCCCTTCTGTGTGAAGAGAAG CGATTCTCCTCTTACTCCCTCCTCCCCCTGAGAACTTCACCCTCATTGGCTTGAAGTGTG TCTAAGGTTAAACAGGGAGTATAGCCAGCGTGAGCTATTACCAACTTGATTTTTGTGATG GGTGCTTGAATTTTGTGGGGAGATTGGACCAATGGCCACCTGAAAAGAAAATATTATTGA GAACCTAAAAGTGAAAGTTTATGCCGGTTTAATTGATTTTCTGGAGAGGAATAGACTGTT GCTCTCATGTAATATTTTCCAGTAAAAATGTTTCCTAAATGTATCAGCTGTTCTCTTTCC CTAGACCCTTCCCCACCCCAGGTTCTAGGACAAATTTGCTACTATATCGTATACTTTGTA TGTCTTCATGTTGGTATATGGGCATGGCTTTATTCTTGCTGGGCTTAAGAAAAGATGTCT TCTTTAGTATGTGAGCTATTTATTTTGTGGGGGAAATGAAAATTATTAATCCCAAATGAT TCTCTTATAAACTATTTGTAAACATCCCTTATTCTTCAGTATTTGACGTAATTAAAAAAT GCCTATTTTGAGTCAACCTTTTCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 39-145, - strand, RNAz p=0.655923 | |
| 865-984, - strand, RNAz p=0.578522 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 39-145, - strand, RNAz p=0.655923 | |
| 865-984, - strand, RNAz p=0.578522 |
| Aligned organism(s): 46 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
| 39-145, gnl|bosTau2|chr5 (70795092-70794986) | |
| 39-145, gnl|Hg17|chr22 (39539805-39539698) | |
| 273-425, gnl|bosTau2|chr5 (70772873-70772721) | |
| 273-425, gnl|canFam2|chr10 (27511242-27510513) | |
| 273-425, gnl|echTel1|scaffold_278359 (4627-5355) | |
| 273-425, gnl|hg17|chr22 (39512773-39513474) | |
| 273-425, gnl|Hg17|chr22 (39513180-39513028) | |
| 273-425, gnl|Mm7|chr15 (81422568-81422416) | |
| 273-425, gnl|oryCun1|scaffold_211553 (13574-14215) | |
| 273-425, gnl|panTro1|chr23_random (12100523-12101226) | |
| 273-425, gnl|rheMac2|chr10 (84691340-84692049) | |
| 541-687, gnl|bosTau2|chr5 (70759821-70759675) | |
| 541-687, gnl|canFam2|chr10 (27522150-27522007) | |
| 541-687, gnl|danRer3|chr3 (17515929-17516056) | |
| 541-687, gnl|dasNov1|scaffold_17666 (38733-38590) | |
| 541-687, gnl|echTel1|scaffold_264654 (13105-13248) | |
| 541-687, gnl|fr1|chrUn (56093552-56093695) | |
| 541-687, gnl|galGal2|chr1 (46656642-46656499) | |
| 541-687, gnl|hg17|chr22 (39497729-39497872) | |
| 541-687, gnl|Hg17|chr22 (39497878-39497732) | |
| 541-687, gnl|loxAfr1|scaffold_5864 (21796-21939) | |
| 541-687, gnl|mm7|chr15 (81411695-81411838) | |
| 541-687, gnl|Mm7|chr15 (81411844-81411698) | |
| 541-687, gnl|monDom2|scaffold_130 (2325522-2325680) | |
| 541-687, gnl|oryCun1|scaffold_211553 (859-1002) | |
| 541-687, gnl|panTro1|chr23_random (12085413-12085556) | |
| 541-687, gnl|rheMac2|chr10 (84678457-84678600) | |
| 541-687, gnl|rn3|chr7 (119689411-119689554) | |
| 541-687, gnl|tetNig1|chr3 (9422117-9422260) | |
| 541-687, gnl|xenTro1|scaffold_156 (708343-708486) | |
| 865-1441, gnl|bosTau2|chr5 (70753383-70752831) | |
| 865-1441, gnl|Hg17|chr22 (39491487-39490927) | |
| 865-1441, gnl|Mm7|chr15 (81404259-81403732) | |
| 1467-1644, gnl|bosTau2|chr5 (70752738-70752567) | |
| 1467-1644, gnl|canFam2|chr10 (27527394-27527072) | |
| 1467-1644, gnl|danRer3|chrNA (51231166-51230816) | |
| 1467-1644, gnl|dasNov1|scaffold_43646 (7210-7522) | |
| 1467-1644, gnl|hg17|chr22 (39490549-39490868) | |
| 1467-1644, gnl|Hg17|chr22 (39490835-39490665) | |
| 1467-1644, gnl|loxAfr1|scaffold_15104 (10832-10525) | |
| 1467-1644, gnl|mm7|chr15 (81403364-81403672) | |
| 1467-1644, gnl|Mm7|chr15 (81403639-81403485) | |
| 1467-1644, gnl|oryCun1|scaffold_198706 (7577-7269) | |
| 1467-1644, gnl|panTro1|chr23_random (12078573-12078893) | |
| 1467-1644, gnl|rheMac2|chr10 (84670113-84670433) | |
| 1467-1644, gnl|rn3|chr7 (119679604-119679909) |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 39-145, gnl|bosTau2|chr5 (70795092-70794986) | |
| 39-145, gnl|Hg17|chr22 (39539805-39539698) | |
| 273-425, gnl|bosTau2|chr5 (70772873-70772721) | |
| 273-425, gnl|canFam2|chr10 (27511242-27510513) | |
| 273-425, gnl|echTel1|scaffold_278359 (4627-5355) | |
| 273-425, gnl|hg17|chr22 (39512773-39513474) | |
| 273-425, gnl|Hg17|chr22 (39513180-39513028) | |
| 273-425, gnl|Mm7|chr15 (81422568-81422416) | |
| 273-425, gnl|oryCun1|scaffold_211553 (13574-14215) | |
| 273-425, gnl|panTro1|chr23_random (12100523-12101226) | |
| 273-425, gnl|rheMac2|chr10 (84691340-84692049) | |
| 541-687, gnl|bosTau2|chr5 (70759821-70759675) | |
| 541-687, gnl|canFam2|chr10 (27522150-27522007) | |
| 541-687, gnl|danRer3|chr3 (17515929-17516056) | |
| 541-687, gnl|dasNov1|scaffold_17666 (38733-38590) | |
| 541-687, gnl|echTel1|scaffold_264654 (13105-13248) | |
| 541-687, gnl|fr1|chrUn (56093552-56093695) | |
| 541-687, gnl|galGal2|chr1 (46656642-46656499) | |
| 541-687, gnl|hg17|chr22 (39497729-39497872) | |
| 541-687, gnl|Hg17|chr22 (39497878-39497732) | |
| 541-687, gnl|loxAfr1|scaffold_5864 (21796-21939) | |
| 541-687, gnl|mm7|chr15 (81411695-81411838) | |
| 541-687, gnl|Mm7|chr15 (81411844-81411698) | |
| 541-687, gnl|monDom2|scaffold_130 (2325522-2325680) | |
| 541-687, gnl|oryCun1|scaffold_211553 (859-1002) | |
| 541-687, gnl|panTro1|chr23_random (12085413-12085556) | |
| 541-687, gnl|rheMac2|chr10 (84678457-84678600) | |
| 541-687, gnl|rn3|chr7 (119689411-119689554) | |
| 541-687, gnl|tetNig1|chr3 (9422117-9422260) | |
| 541-687, gnl|xenTro1|scaffold_156 (708343-708486) | |
| 865-1441, gnl|bosTau2|chr5 (70753383-70752831) | |
| 865-1441, gnl|Hg17|chr22 (39491487-39490927) | |
| 865-1441, gnl|Mm7|chr15 (81404259-81403732) | |
| 1467-1644, gnl|bosTau2|chr5 (70752738-70752567) | |
| 1467-1644, gnl|canFam2|chr10 (27527394-27527072) | |
| 1467-1644, gnl|danRer3|chrNA (51231166-51230816) | |
| 1467-1644, gnl|dasNov1|scaffold_43646 (7210-7522) | |
| 1467-1644, gnl|hg17|chr22 (39490549-39490868) | |
| 1467-1644, gnl|Hg17|chr22 (39490835-39490665) | |
| 1467-1644, gnl|loxAfr1|scaffold_15104 (10832-10525) | |
| 1467-1644, gnl|mm7|chr15 (81403364-81403672) | |
| 1467-1644, gnl|Mm7|chr15 (81403639-81403485) | |
| 1467-1644, gnl|oryCun1|scaffold_198706 (7577-7269) | |
| 1467-1644, gnl|panTro1|chr23_random (12078573-12078893) | |
| 1467-1644, gnl|rheMac2|chr10 (84670113-84670433) | |
| 1467-1644, gnl|rn3|chr7 (119679604-119679909) |
| Expressed library(ies): 28 entry(ies) | More info |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
| fat (0.442282) | |
| amn (0.417711) | |
| sme (0.305437) | |
| cbe (0.239234) | |
| ebs (0.236602) | |
| jca (0.22792) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| aor (0.195274) | |
| col (0.195008) | |
| nlu (0.191681) | |
| gul (0.177588) | |
| cki (0.165235) | |
| csp (0.161186) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| che (0.136314) | |
| ute (0.132784) | |
| cov (0.132153) | |
| kid (0.129735) | |
| ret (0.128733) | |
| sug (0.127291) | |
| bla (0.124347) | |
| eru (0.120048) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fat (0.442282) | |
| amn (0.417711) | |
| sme (0.305437) | |
| cbe (0.239234) | |
| ebs (0.236602) | |
| jca (0.22792) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| aor (0.195274) | |
| col (0.195008) | |
| nlu (0.191681) | |
| gul (0.177588) | |
| cki (0.165235) | |
| csp (0.161186) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| che (0.136314) | |
| ute (0.132784) | |
| cov (0.132153) | |
| kid (0.129735) | |
| ret (0.128733) | |
| sug (0.127291) | |
| bla (0.124347) | |
| eru (0.120048) | |
| cty (0.10408) | |
| jej (0.0989218) |