Non-Coding RNA Search

Ss1.1-Pig4-TMW8028P14.5

Sequence:


               
               AGCTTGACTTTTATTTCCTGTGGAGAGAAAACAATGTCATTTATTTGATTTTGCACCTCA
CCTCTCACAGGAAGCATCAAAAATGCGGTCTTTTCTCCCTGAATGCGTCTTTTTTTAACT
GAACAGCACATCAGAGTTAACTCTGGCTTCTGGGCCAAATTAGAAATAACCAGTCTAGCT
TTCTTTTTTTTTTTTTTAAATGGTGAAATGTCTCTCAGCGGAGTTGCAGCTTTCTCAGAC
CCTTTCAGCATCTGTGTTTATTACACTCGGGTGTCACTCACGTCTGACATCCGCACCTAC
ATTTTCTCCCCCTCCCCCTCCTTCAGCCAGCCTATGATAACACTAAGGATTATTAATGTT
GGTTTTGTATCTCGTTAAGGACAGAATTGTCACTTGTACTCTTTCTGTGGCATTCAGCGT
TGCTGTGGCTGACACCACTGTATATGGTTCATCATTGCTCTGAAGGTCAAAAGCCTCATT
TTATTTTGCTGGTTTGATTTTTTTTTAAAGGAAAAAAAAAAAAAACTGCCCTGAATTAAA
TGGCTGTTTTAACAGTAGGCTCTTAGCATTACACCACATAGTCATTTTTCATGTTCTTGT
TTAACAGGCACTGAGGTTCTGGTTTAAATTAAATAGCTGCAAATGAGACAATTTATAACC
CATTAGGTTGGATGGAAAATTGTTTCTCAAAAGCAAATAAGTAATAAATCTGGTATCTGC
CTATAACTCACAGTTGATAAGAAAGTGGCCATTACTCACTAGGATTATATATGATTTGGG
CTTGGGGTAATTTGGAAGTGTTAGGTTTGTGTCTTTGTAGCAGTATTTTTATTAGAAAAG
AGTCTATTGGCCTTTTACAGGGTATTAATCCCTTTGTCACCTACCATTGATGCCTTACGG
TTTTTGACTTTCATTTAAAAACCTTTTCTTGATGCATGATAAGTGTAATCGGTACCTGCT
CACTTATTTGTCTGTATTTAGTTTTGCTGTATTATTTAATTATTTTTCCAGCATTTTTTC
CCTCCTTACAAATATGATATTCTTTAGTGTTAAGCCAAGGTGTTTGTTGATCATGTACAT
GTCCCAATAATGAATTAATAAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTTGACTTTTATTTCCTGTGGAGAGAAAACAATGTCATTTATTTGATTTTGCACCTCA
CCTCTCACAGGAAGCATCAAAAATGCGGTCTTTTCTCCCTGAATGCGTCTTTTTTTAACT
GAACAGCACATCAGAGTTAACTCTGGCTTCTGGGCCAAATTAGAAATAACCAGTCTAGCT
TTCTTTTTTTTTTTTTTAAATGGTGAAATGTCTCTCAGCGGAGTTGCAGCTTTCTCAGAC
CCTTTCAGCATCTGTGTTTATTACACTCGGGTGTCACTCACGTCTGACATCCGCACCTAC
ATTTTCTCCCCCTCCCCCTCCTTCAGCCAGCCTATGATAACACTAAGGATTATTAATGTT
GGTTTTGTATCTCGTTAAGGACAGAATTGTCACTTGTACTCTTTCTGTGGCATTCAGCGT
TGCTGTGGCTGACACCACTGTATATGGTTCATCATTGCTCTGAAGGTCAAAAGCCTCATT
TTATTTTGCTGGTTTGATTTTTTTTTAAAGGAAAAAAAAAAAAAACTGCCCTGAATTAAA
TGGCTGTTTTAACAGTAGGCTCTTAGCATTACACCACATAGTCATTTTTCATGTTCTTGT
TTAACAGGCACTGAGGTTCTGGTTTAAATTAAATAGCTGCAAATGAGACAATTTATAACC
CATTAGGTTGGATGGAAAATTGTTTCTCAAAAGCAAATAAGTAATAAATCTGGTATCTGC
CTATAACTCACAGTTGATAAGAAAGTGGCCATTACTCACTAGGATTATATATGATTTGGG
CTTGGGGTAATTTGGAAGTGTTAGGTTTGTGTCTTTGTAGCAGTATTTTTATTAGAAAAG
AGTCTATTGGCCTTTTACAGGGTATTAATCCCTTTGTCACCTACCATTGATGCCTTACGG
TTTTTGACTTTCATTTAAAAACCTTTTCTTGATGCATGATAAGTGTAATCGGTACCTGCT
CACTTATTTGTCTGTATTTAGTTTTGCTGTATTATTTAATTATTTTTCCAGCATTTTTTC
CCTCCTTACAAATATGATATTCTTTAGTGTTAAGCCAAGGTGTTTGTTGATCATGTACAT
GTCCCAATAATGAATTAATAAACT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               581-740, + strand, RNAz p=0.948975

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               581-740, + strand, RNAz p=0.948975

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               662-778, - strand, RNAmicro p=0.986554
               

               
               676-765, + strand, RNAmicro p=0.981113

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               662-778, - strand, RNAmicro p=0.986554
               

               
               676-765, + strand, RNAmicro p=0.981113

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_020962, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_020962, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               37-1104, gnl|bosTau2|chr10 (8762037-8760967)
               

               
               37-1104, gnl|Hg17|chr15 (63461958-63460887)
               

               
               37-1104, gnl|Mm7|chr9 (65166496-65167572)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-1104, gnl|bosTau2|chr10 (8762037-8760967)
               

               
               37-1104, gnl|Hg17|chr15 (63461958-63460887)
               

               
               37-1104, gnl|Mm7|chr9 (65166496-65167572)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               pgl (0.35545)
               

               
               fce (0.271592)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

Expressed library(ies): 9 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.35545)
               

               
               fce (0.271592)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

	662-778, - strand, RNAmicro p=0.986554
	676-765, + strand, RNAmicro p=0.981113

	37-1104, gnl\|bosTau2\|chr10 (8762037-8760967)
	37-1104, gnl\|Hg17\|chr15 (63461958-63460887)
	37-1104, gnl\|Mm7\|chr9 (65166496-65167572)

	pgl (0.35545)
	fce (0.271592)
	nep (0.183925)
	fbs (0.175346)
	ssp (0.13552)
	ova (0.129132)
	ecc (0.115035)
	spc (0.113366)
	nbm (0.0993246)