Non-Coding RNA Search

Ss1.1-Pig4-TMW8028P15.5

Sequence:


               
               CGGCACAGCTGCAGAAGGGGCACCGCTGAGCTGCCGAGAGGAGGCTCGCTCCACCCGGCT
GCCTGCCCACCGCCCGCCGGCGAAGGGCCGTTCCTGGCGAGGAGAAAGAGGGCAGAGGAA
GGCACAGCACCCGCTCTGGCCCTCGCACCACAGCTCCAGCTGGCAGCAACACCTCCCACC
AATTTATCCAACTTCTGCCAAGGCTCTGAAATGCCAACTATGTCGAGGCCTGCACTTGAT
GTCAAGGGTGGCACCTCACCTGCGAAGGAGGATGCCAACCAAGAGATGAGTTCTCTGGCC
TACTCTAACCTGGGGGTCAAAGATCGCAAAGCAGTGGCCATCCTGCACTACCCTGGGGTT
GCCTCGAATGGAACCAAGGCCAGTGGGGCTCCCGCTAGCTCCTCAGGATCTCCATCTCCA
ATAGGCTCTCCTACTGCCACCCCTCCCAATAAACCCCCACCCTTCAACCTGCACCCCGCC
CCTCACCTGCTGGCCAGTATGCAGCTGCAGAAACTTAATAGCCAGTATCATGGGATGGCC
GCCGCCACTCCGGGCCAACCCGGGGAGGCAGGTCCCCTGCAGAACTGGGGCTTCGGGGCT
CAGGCGGGAGGGGCGGGGTCACTCTCTCCCTCTACTGGTGCCCAGAGCCCTGCCATCATC
GACTCGGACCCGGTGGATGAGGAGGTGCTGATGTCGCTGGTGGTGGAACTGGGACTGGAC
CGAGCCAATGAGCTTCCGGAGCTGTGGCTGGGGCAGAATGAGTTTGACTTCACGGCAGAC
TTTCCGTCTGGCTGCTGATGCCAACTGTTCCTAAAGATGGAGGAATAAAAGCCACCAATT
CTGTTGTAAATAAAAATAAAGGTTACTTACAAAGAGAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCACAGCTGCAGAAGGGGCACCGCTGAGCTGCCGAGAGGAGGCTCGCTCCACCCGGCT
GCCTGCCCACCGCCCGCCGGCGAAGGGCCGTTCCTGGCGAGGAGAAAGAGGGCAGAGGAA
GGCACAGCACCCGCTCTGGCCCTCGCACCACAGCTCCAGCTGGCAGCAACACCTCCCACC
AATTTATCCAACTTCTGCCAAGGCTCTGAAATGCCAACTATGTCGAGGCCTGCACTTGAT
GTCAAGGGTGGCACCTCACCTGCGAAGGAGGATGCCAACCAAGAGATGAGTTCTCTGGCC
TACTCTAACCTGGGGGTCAAAGATCGCAAAGCAGTGGCCATCCTGCACTACCCTGGGGTT
GCCTCGAATGGAACCAAGGCCAGTGGGGCTCCCGCTAGCTCCTCAGGATCTCCATCTCCA
ATAGGCTCTCCTACTGCCACCCCTCCCAATAAACCCCCACCCTTCAACCTGCACCCCGCC
CCTCACCTGCTGGCCAGTATGCAGCTGCAGAAACTTAATAGCCAGTATCATGGGATGGCC
GCCGCCACTCCGGGCCAACCCGGGGAGGCAGGTCCCCTGCAGAACTGGGGCTTCGGGGCT
CAGGCGGGAGGGGCGGGGTCACTCTCTCCCTCTACTGGTGCCCAGAGCCCTGCCATCATC
GACTCGGACCCGGTGGATGAGGAGGTGCTGATGTCGCTGGTGGTGGAACTGGGACTGGAC
CGAGCCAATGAGCTTCCGGAGCTGTGGCTGGGGCAGAATGAGTTTGACTTCACGGCAGAC
TTTCCGTCTGGCTGCTGATGCCAACTGTTCCTAAAGATGGAGGAATAAAAGCCACCAATT
CTGTTGTAAATAAAAATAAAGGTTACTTACAAAGAGAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9BDI3_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9BDI3_BOVIN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               349-644, - strand, RNAz p=0.988981

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               349-644, - strand, RNAz p=0.988981

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-143, gnl|bosTau2|chrX (23795485-23795340)
               

               
               1-143, gnl|canFam2|chrX (59257689-59257833)
               

               
               1-143, gnl|dasNov1|scaffold_13322 (7811-7963)
               

               
               1-143, gnl|echTel1|scaffold_270401 (1321-1197)
               

               
               1-143, gnl|hg17|chrX (71309840-71309984)
               

               
               1-143, gnl|Hg17|chrX (71310040-71309898)
               

               
               1-143, gnl|loxAfr1|scaffold_15902 (15603-15461)
               

               
               1-143, gnl|mm7|chrX (97579333-97579478)
               

               
               1-143, gnl|Mm7|chrX (97579533-97579391)
               

               
               1-143, gnl|oryCun1|scaffold_213659 (32879-32735)
               

               
               1-143, gnl|rheMac2|chrX (71236476-71236620)
               

               
               1-143, gnl|rn3|chrX (90379044-90379189)
               


               
               269-877, gnl|bosTau2|chrX (23790695-23790088)
               

               
               269-877, gnl|Hg17|chrX (71305117-71304517)
               

               
               269-877, gnl|Mm7|chrX (97575365-97574737)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-143, gnl|bosTau2|chrX (23795485-23795340)
               

               
               1-143, gnl|canFam2|chrX (59257689-59257833)
               

               
               1-143, gnl|dasNov1|scaffold_13322 (7811-7963)
               

               
               1-143, gnl|echTel1|scaffold_270401 (1321-1197)
               

               
               1-143, gnl|hg17|chrX (71309840-71309984)
               

               
               1-143, gnl|Hg17|chrX (71310040-71309898)
               

               
               1-143, gnl|loxAfr1|scaffold_15902 (15603-15461)
               

               
               1-143, gnl|mm7|chrX (97579333-97579478)
               

               
               1-143, gnl|Mm7|chrX (97579533-97579391)
               

               
               1-143, gnl|oryCun1|scaffold_213659 (32879-32735)
               

               
               1-143, gnl|rheMac2|chrX (71236476-71236620)
               

               
               1-143, gnl|rn3|chrX (90379044-90379189)
               


               
               269-877, gnl|bosTau2|chrX (23790695-23790088)
               

               
               269-877, gnl|Hg17|chrX (71305117-71304517)
               

               
               269-877, gnl|Mm7|chrX (97575365-97574737)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fce (0.271592)
               

               
               ute (0.265569)
               

               
               cov (0.264306)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               ute (0.265569)
               

               
               cov (0.264306)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)

	1-143, gnl\|bosTau2\|chrX (23795485-23795340)
	1-143, gnl\|canFam2\|chrX (59257689-59257833)
	1-143, gnl\|dasNov1\|scaffold_13322 (7811-7963)
	1-143, gnl\|echTel1\|scaffold_270401 (1321-1197)
	1-143, gnl\|hg17\|chrX (71309840-71309984)
	1-143, gnl\|Hg17\|chrX (71310040-71309898)
	1-143, gnl\|loxAfr1\|scaffold_15902 (15603-15461)
	1-143, gnl\|mm7\|chrX (97579333-97579478)
	1-143, gnl\|Mm7\|chrX (97579533-97579391)
	1-143, gnl\|oryCun1\|scaffold_213659 (32879-32735)
	1-143, gnl\|rheMac2\|chrX (71236476-71236620)
	1-143, gnl\|rn3\|chrX (90379044-90379189)

	269-877, gnl\|bosTau2\|chrX (23790695-23790088)
	269-877, gnl\|Hg17\|chrX (71305117-71304517)
	269-877, gnl\|Mm7\|chrX (97575365-97574737)

	fce (0.271592)
	ute (0.265569)
	cov (0.264306)
	pla (0.133672)
	nmm (0.132802)
	ese (0.126502)