Ss1.1-Pig4-TMW8029A05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTATCCTCAGATATAAGAGCCACTTGCAACCTGCCATCTGCCACCATGAGAAGCCACCA CGGCTCTTCTCACGGGAGAAGCCACCAGCCCAGCCTCTCAAGATGGCCTTCGTCCCTGCA CCAGGCTACCAGCCCACCTACAATCCCACGCTGCCCTACTACAAGCCCATCCCAGGCGGT CTCCGGGTCGGAATGTCCGTTTACATCCAAGGAGTGGCCAACGAGCACATGAAGAGGTTC TTCGTGAACTTCGTGGTGGGGCAGGGCCCGGGGGCGGATGTCGCCTTCCACTTCAATCCT CGCTTCGATGGCTGGGACAAGGTGGTCTTCAACTCGCAGCAGGACGGCAAGTGGGGCAAC GAGGAGAAGAAGAGGAGCATGCCCTTCCGCAAGGGCGCCGCCTTCGAGCTGGTCATCATG GTCCTGCCCGAGCACTACAAGGTGGTGGTAAACGGTGATCCCTTCTATGAGTTTGGGCAC CGGATCCCAGTCCAGTTGGTCACCCACCTGCAAGTGGATGGGGACCTGACGCTTCAATCA ATCAACTTCATCGGAGGCCAGCCCGCCCCCAGCCCGGGTCCTGGAAAGCACAACCAACAG CCGTGTAACCTGCCATGCATGGAGGGAGCCCCAACCTTCAACCCGCCTGTGCCATATAAG ACGAGACTGCAAGGGGGCCTTGTGGCCCGAAGAACCATCGTGATCAAGGGCTATGTGCCC CCCTCGGGCAAGAGCCTTGTCATCAACTTCAAGGTGGGCTCCTCAGGGGACGTGGCTTTG CACATCAACCCCCGCCTGACCGAGGGCATCGTGGTTCGGAACAGCTATCTGAATGGCAAG TGGGGAGCCGAGGAGAGGAAGAGCTCCTTCAACCCGTTTGCTCCCGGACAGTACTTCGAT CTGTCCATTCGCTGTGGCTTGGATCGCTTCAAGGTTTACGCCAATGGCCAGCACCTCTTC GACTTCTCCCATCGCCTCTCGAACTTCCAAGGGGTGGACACACTGGAGATCCAGGGCGAT GTCACCTTGTCCTACGTCCAGATCTGATCTATTCCTGGGGCCATAACCCTTGGGCGCACA GAGGAAGAGCCTGTCGGACTCCCTTCTAAGCCTCTAATAAAATTAATAAACTGCCAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTATCCTCAGATATAAGAGCCACTTGCAACCTGCCATCTGCCACCATGAGAAGCCACCA CGGCTCTTCTCACGGGAGAAGCCACCAGCCCAGCCTCTCAAGATGGCCTTCGTCCCTGCA CCAGGCTACCAGCCCACCTACAATCCCACGCTGCCCTACTACAAGCCCATCCCAGGCGGT CTCCGGGTCGGAATGTCCGTTTACATCCAAGGAGTGGCCAACGAGCACATGAAGAGGTTC TTCGTGAACTTCGTGGTGGGGCAGGGCCCGGGGGCGGATGTCGCCTTCCACTTCAATCCT CGCTTCGATGGCTGGGACAAGGTGGTCTTCAACTCGCAGCAGGACGGCAAGTGGGGCAAC GAGGAGAAGAAGAGGAGCATGCCCTTCCGCAAGGGCGCCGCCTTCGAGCTGGTCATCATG GTCCTGCCCGAGCACTACAAGGTGGTGGTAAACGGTGATCCCTTCTATGAGTTTGGGCAC CGGATCCCAGTCCAGTTGGTCACCCACCTGCAAGTGGATGGGGACCTGACGCTTCAATCA ATCAACTTCATCGGAGGCCAGCCCGCCCCCAGCCCGGGTCCTGGAAAGCACAACCAACAG CCGTGTAACCTGCCATGCATGGAGGGAGCCCCAACCTTCAACCCGCCTGTGCCATATAAG ACGAGACTGCAAGGGGGCCTTGTGGCCCGAAGAACCATCGTGATCAAGGGCTATGTGCCC CCCTCGGGCAAGAGCCTTGTCATCAACTTCAAGGTGGGCTCCTCAGGGGACGTGGCTTTG CACATCAACCCCCGCCTGACCGAGGGCATCGTGGTTCGGAACAGCTATCTGAATGGCAAG TGGGGAGCCGAGGAGAGGAAGAGCTCCTTCAACCCGTTTGCTCCCGGACAGTACTTCGAT CTGTCCATTCGCTGTGGCTTGGATCGCTTCAAGGTTTACGCCAATGGCCAGCACCTCTTC GACTTCTCCCATCGCCTCTCGAACTTCCAAGGGGTGGACACACTGGAGATCCAGGGCGAT GTCACCTTGTCCTACGTCCAGATCTGATCTATTCCTGGGGCCATAACCCTTGGGCGCACA GAGGAAGAGCCTGTCGGACTCCCTTCTAAGCCTCTAATAAAATTAATAAACTGCCAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 980-1095, - strand, RNAz p=0.535429 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 980-1095, - strand, RNAz p=0.535429 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 1-146, gnl|bosTau2|chr18 (44569760-44569615) | |
| 1-146, gnl|canFam2|chr1 (117203051-117202430) | |
| 1-146, gnl|echTel1|scaffold_308233 (92707-92166) | |
| 1-146, gnl|hg17|chr19 (43995230-43995809) | |
| 1-146, gnl|Hg17|chr19 (43995466-43995323) | |
| 1-146, gnl|loxAfr1|scaffold_40427 (31255-31828) | |
| 1-146, gnl|mm7|chr7 (25768390-25767926) | |
| 1-146, gnl|Mm7|chr7 (25768214-25768342) | |
| 1-146, gnl|monDom2|scaffold_139 (801556-802207) | |
| 1-146, gnl|oryCun1|scaffold_203461 (75574-75074) | |
| 1-146, gnl|panTro1|chr20 (40925626-40926205) | |
| 1-146, gnl|rheMac2|chr19 (45154977-45155556) | |
| 1-146, gnl|rn3|chr1 (84021114-84020644) | |
| 235-443, gnl|bosTau2|chr18 (44567478-44567270) | |
| 235-443, gnl|canFam2|chr1 (117205101-117204878) | |
| 235-443, gnl|dasNov1|scaffold_45776 (101-312) | |
| 235-443, gnl|echTel1|scaffold_308233 (94532-94318) | |
| 235-443, gnl|fr1|chrUn (97578368-97578181) | |
| 235-443, gnl|hg17|chr19 (43991197-43991437) | |
| 235-443, gnl|Hg17|chr19 (43991430-43991222) | |
| 235-443, gnl|loxAfr1|scaffold_25523 (33268-33508) | |
| 235-443, gnl|mm7|chr7 (25770173-25769937) | |
| 235-443, gnl|Mm7|chr7 (25769942-25770148) | |
| 235-443, gnl|monDom2|scaffold_139 (801116-801333) | |
| 235-443, gnl|oryCun1|scaffold_163602 (4199-3968) | |
| 235-443, gnl|panTro1|chr20 (40921586-40921826) | |
| 235-443, gnl|rheMac2|chr19 (45151111-45151351) | |
| 235-443, gnl|rn3|chr1 (84022873-84022636) | |
| 235-443, gnl|tetNig1|chrUn_random (50427751-50427535) | |
| 901-1123, gnl|bosTau2|chr18 (44563015-44562786) | |
| 901-1123, gnl|Hg17|chr19 (43984390-43984170) | |
| 901-1123, gnl|Mm7|chr7 (25775645-25775851) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-146, gnl|bosTau2|chr18 (44569760-44569615) | |
| 1-146, gnl|canFam2|chr1 (117203051-117202430) | |
| 1-146, gnl|echTel1|scaffold_308233 (92707-92166) | |
| 1-146, gnl|hg17|chr19 (43995230-43995809) | |
| 1-146, gnl|Hg17|chr19 (43995466-43995323) | |
| 1-146, gnl|loxAfr1|scaffold_40427 (31255-31828) | |
| 1-146, gnl|mm7|chr7 (25768390-25767926) | |
| 1-146, gnl|Mm7|chr7 (25768214-25768342) | |
| 1-146, gnl|monDom2|scaffold_139 (801556-802207) | |
| 1-146, gnl|oryCun1|scaffold_203461 (75574-75074) | |
| 1-146, gnl|panTro1|chr20 (40925626-40926205) | |
| 1-146, gnl|rheMac2|chr19 (45154977-45155556) | |
| 1-146, gnl|rn3|chr1 (84021114-84020644) | |
| 235-443, gnl|bosTau2|chr18 (44567478-44567270) | |
| 235-443, gnl|canFam2|chr1 (117205101-117204878) | |
| 235-443, gnl|dasNov1|scaffold_45776 (101-312) | |
| 235-443, gnl|echTel1|scaffold_308233 (94532-94318) | |
| 235-443, gnl|fr1|chrUn (97578368-97578181) | |
| 235-443, gnl|hg17|chr19 (43991197-43991437) | |
| 235-443, gnl|Hg17|chr19 (43991430-43991222) | |
| 235-443, gnl|loxAfr1|scaffold_25523 (33268-33508) | |
| 235-443, gnl|mm7|chr7 (25770173-25769937) | |
| 235-443, gnl|Mm7|chr7 (25769942-25770148) | |
| 235-443, gnl|monDom2|scaffold_139 (801116-801333) | |
| 235-443, gnl|oryCun1|scaffold_163602 (4199-3968) | |
| 235-443, gnl|panTro1|chr20 (40921586-40921826) | |
| 235-443, gnl|rheMac2|chr19 (45151111-45151351) | |
| 235-443, gnl|rn3|chr1 (84022873-84022636) | |
| 235-443, gnl|tetNig1|chrUn_random (50427751-50427535) | |
| 901-1123, gnl|bosTau2|chr18 (44563015-44562786) | |
| 901-1123, gnl|Hg17|chr19 (43984390-43984170) | |
| 901-1123, gnl|Mm7|chr7 (25775645-25775851) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| ton (8.59951) | |
| col (3.90016) | |
| nco (2.10254) | |
| jej (1.97844) | |
| duo (1.38241) | |
| ill (1.22915) | |
| cje (0.826173) | |
| nje (0.66368) | |
| eye (0.170503) | |
| cst (0.140036) | |
| pla (0.133672) | |
| eje (0.0988338) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ton (8.59951) | |
| col (3.90016) | |
| nco (2.10254) | |
| jej (1.97844) | |
| duo (1.38241) | |
| ill (1.22915) | |
| cje (0.826173) | |
| nje (0.66368) | |
| eye (0.170503) | |
| cst (0.140036) | |
| pla (0.133672) | |
| eje (0.0988338) |