Ss1.1-Pig4-TMW8029A09.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCGGCTCCGGGCACAGTTCTCTAAGATTGATTTCTAAAGATATGGTTTTCACCCCACTT GGTCAACGCACATAAGTTTTCTTCCTTTTGGACCCCTATTTTATACCACAATGCAACAAG CTTTAGAACTAGCTTTGGATCGTGCAGAGTATGTCATTGAAAGTGCCCGACAAAGACCTC CTAAAAGGAAATATCTATCTAGTGGAAGAAAATCTATATTTCAAAAACTTTATGACTTAT ATATTGAAGAATGTGAAAAAGAACCTGAGGTTAAGAAATTAAGAAGAAATGTGAACTTGT TAGAGAAGCTTGTTATGCAAGAGACGTTGTCATGTTTAGTGGTCAACCTGTATCCAGGAA ATGAAGGATACTCACTGATGCTCAGGGGAAAAAATGGATCAGATTCTGAGACCATTCGAC TGCCTTATGAAGAAGGGGAATTGCTTGAATACTTGGATGCAGAAGAATTACCTCCTATTT TGGTTGATCTCCTAGAAAAATCTCAGGTTAATATTTTTCATTGTGGATGTGTCATAGCAG AAATACGTGACTACAGGCAGTCAAATAATATGAAATCTCCTGGTTACCAAAGTAGGCACA TTCTCTTACGTCCAACAATGCAGACGCTAATCTGTGATGTGCACTCAATAACAAGTGATA ACCATAAATGGACCCAGGAAGACAAACTTTTGCTTGAGAGCCAGTTGATTCTAGCTACAG CCGAACCACTGTGTCTTGATCCTTCTATAGCCGTAACCTGCACTGCAAACAGATTGCTCT ATAATAAGCAAAAGATGAACACGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCGGCTCCGGGCACAGTTCTCTAAGATTGATTTCTAAAGATATGGTTTTCACCCCACTT GGTCAACGCACATAAGTTTTCTTCCTTTTGGACCCCTATTTTATACCACAATGCAACAAG CTTTAGAACTAGCTTTGGATCGTGCAGAGTATGTCATTGAAAGTGCCCGACAAAGACCTC CTAAAAGGAAATATCTATCTAGTGGAAGAAAATCTATATTTCAAAAACTTTATGACTTAT ATATTGAAGAATGTGAAAAAGAACCTGAGGTTAAGAAATTAAGAAGAAATGTGAACTTGT TAGAGAAGCTTGTTATGCAAGAGACGTTGTCATGTTTAGTGGTCAACCTGTATCCAGGAA ATGAAGGATACTCACTGATGCTCAGGGGAAAAAATGGATCAGATTCTGAGACCATTCGAC TGCCTTATGAAGAAGGGGAATTGCTTGAATACTTGGATGCAGAAGAATTACCTCCTATTT TGGTTGATCTCCTAGAAAAATCTCAGGTTAATATTTTTCATTGTGGATGTGTCATAGCAG AAATACGTGACTACAGGCAGTCAAATAATATGAAATCTCCTGGTTACCAAAGTAGGCACA TTCTCTTACGTCCAACAATGCAGACGCTAATCTGTGATGTGCACTCAATAACAAGTGATA ACCATAAATGGACCCAGGAAGACAAACTTTTGCTTGAGAGCCAGTTGATTCTAGCTACAG CCGAACCACTGTGTCTTGATCCTTCTATAGCCGTAACCTGCACTGCAAACAGATTGCTCT ATAATAAGCAAAAGATGAACACGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 522-623, + strand, RNAz p=0.623796 | |
| 675-804, - strand, RNAz p=0.770708 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 522-623, + strand, RNAz p=0.623796 | |
| 675-804, - strand, RNAz p=0.770708 |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 274-402, gnl|bosTau2|chr12 (14837480-14837352) | |
| 274-402, gnl|canFam2|chr25 (6652000-6651840) | |
| 274-402, gnl|danRer3|chr10 (32349425-32349581) | |
| 274-402, gnl|dasNov1|scaffold_12459 (50895-51055) | |
| 274-402, gnl|echTel1|scaffold_294521 (54805-54965) | |
| 274-402, gnl|fr1|chrUn (229953480-229953627) | |
| 274-402, gnl|galGal2|chr1 (164373634-164373484) | |
| 274-402, gnl|hg17|chr13 (36517373-36517533) | |
| 274-402, gnl|Hg17|chr13 (36517512-36517384) | |
| 274-402, gnl|loxAfr1|scaffold_24626 (27836-27706) | |
| 274-402, gnl|mm7|chr3 (54830838-54830678) | |
| 274-402, gnl|Mm7|chr3 (54830697-54830825) | |
| 274-402, gnl|monDom2|scaffold_15 (49042592-49042744) | |
| 274-402, gnl|oryCun1|scaffold_157304 (5841-5681) | |
| 274-402, gnl|panTro1|chr14_random (9203528-9203368) | |
| 274-402, gnl|rheMac2|chr17 (16249846-16250006) | |
| 274-402, gnl|rn3|chr2 (143878872-143878712) | |
| 274-402, gnl|tetNig1|chr7 (2653879-2654015) | |
| 274-402, gnl|xenTro1|scaffold_570 (328355-328217) | |
| 504-623, gnl|bosTau2|chr12 (14834951-14834832) | |
| 504-623, gnl|canFam2|chr25 (6655939-6655802) | |
| 504-623, gnl|danRer3|chr10 (32347791-32347917) | |
| 504-623, gnl|dasNov1|scaffold_12459 (46311-46447) | |
| 504-623, gnl|echTel1|scaffold_294521 (49029-49164) | |
| 504-623, gnl|fr1|chrUn (229953069-229953193) | |
| 504-623, gnl|galGal2|chr1 (164374942-164374818) | |
| 504-623, gnl|hg17|chr13 (36512697-36512833) | |
| 504-623, gnl|Hg17|chr13 (36512832-36512713) | |
| 504-623, gnl|loxAfr1|scaffold_66899 (5743-5603) | |
| 504-623, gnl|mm7|chr3 (54836204-54836067) | |
| 504-623, gnl|Mm7|chr3 (54836066-54836185) | |
| 504-623, gnl|monDom2|scaffold_15 (49040202-49040340) | |
| 504-623, gnl|oryCun1|scaffold_152360 (8809-8946) | |
| 504-623, gnl|panTro1|chr14_random (9208206-9208070) | |
| 504-623, gnl|rheMac2|chr17 (16244833-16244966) | |
| 504-623, gnl|rn3|chr2 (143884162-143884026) | |
| 504-623, gnl|tetNig1|chr7 (2653413-2653543) | |
| 504-623, gnl|xenTro1|scaffold_570 (332799-332666) | |
| 675-804, gnl|bosTau2|chr12 (14833256-14833127) | |
| 675-804, gnl|canFam2|chr25 (6659305-6659155) | |
| 675-804, gnl|danRer3|chr10 (32345371-32345520) | |
| 675-804, gnl|dasNov1|scaffold_61916 (8317-8175) | |
| 675-804, gnl|echTel1|scaffold_294521 (44668-44818) | |
| 675-804, gnl|fr1|chrUn (229952564-229952712) | |
| 675-804, gnl|galGal2|chr1 (164376170-164376021) | |
| 675-804, gnl|hg17|chr13 (36505582-36505732) | |
| 675-804, gnl|Hg17|chr13 (36505728-36505599) | |
| 675-804, gnl|loxAfr1|scaffold_66899 (8793-8642) | |
| 675-804, gnl|mm7|chr3 (54837611-54837461) | |
| 675-804, gnl|Mm7|chr3 (54837463-54837592) | |
| 675-804, gnl|monDom2|scaffold_15 (49038586-49038736) | |
| 675-804, gnl|oryCun1|scaffold_152360 (4972-5120) | |
| 675-804, gnl|panTro1|chr14_random (9216468-9216318) | |
| 675-804, gnl|rheMac2|chr17 (16237951-16238101) | |
| 675-804, gnl|rn3|chr2 (143885507-143885357) | |
| 675-804, gnl|tetNig1|chr7 (2652871-2653021) | |
| 675-804, gnl|xenTro1|scaffold_570 (334296-334154) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 274-402, gnl|bosTau2|chr12 (14837480-14837352) | |
| 274-402, gnl|canFam2|chr25 (6652000-6651840) | |
| 274-402, gnl|danRer3|chr10 (32349425-32349581) | |
| 274-402, gnl|dasNov1|scaffold_12459 (50895-51055) | |
| 274-402, gnl|echTel1|scaffold_294521 (54805-54965) | |
| 274-402, gnl|fr1|chrUn (229953480-229953627) | |
| 274-402, gnl|galGal2|chr1 (164373634-164373484) | |
| 274-402, gnl|hg17|chr13 (36517373-36517533) | |
| 274-402, gnl|Hg17|chr13 (36517512-36517384) | |
| 274-402, gnl|loxAfr1|scaffold_24626 (27836-27706) | |
| 274-402, gnl|mm7|chr3 (54830838-54830678) | |
| 274-402, gnl|Mm7|chr3 (54830697-54830825) | |
| 274-402, gnl|monDom2|scaffold_15 (49042592-49042744) | |
| 274-402, gnl|oryCun1|scaffold_157304 (5841-5681) | |
| 274-402, gnl|panTro1|chr14_random (9203528-9203368) | |
| 274-402, gnl|rheMac2|chr17 (16249846-16250006) | |
| 274-402, gnl|rn3|chr2 (143878872-143878712) | |
| 274-402, gnl|tetNig1|chr7 (2653879-2654015) | |
| 274-402, gnl|xenTro1|scaffold_570 (328355-328217) | |
| 504-623, gnl|bosTau2|chr12 (14834951-14834832) | |
| 504-623, gnl|canFam2|chr25 (6655939-6655802) | |
| 504-623, gnl|danRer3|chr10 (32347791-32347917) | |
| 504-623, gnl|dasNov1|scaffold_12459 (46311-46447) | |
| 504-623, gnl|echTel1|scaffold_294521 (49029-49164) | |
| 504-623, gnl|fr1|chrUn (229953069-229953193) | |
| 504-623, gnl|galGal2|chr1 (164374942-164374818) | |
| 504-623, gnl|hg17|chr13 (36512697-36512833) | |
| 504-623, gnl|Hg17|chr13 (36512832-36512713) | |
| 504-623, gnl|loxAfr1|scaffold_66899 (5743-5603) | |
| 504-623, gnl|mm7|chr3 (54836204-54836067) | |
| 504-623, gnl|Mm7|chr3 (54836066-54836185) | |
| 504-623, gnl|monDom2|scaffold_15 (49040202-49040340) | |
| 504-623, gnl|oryCun1|scaffold_152360 (8809-8946) | |
| 504-623, gnl|panTro1|chr14_random (9208206-9208070) | |
| 504-623, gnl|rheMac2|chr17 (16244833-16244966) | |
| 504-623, gnl|rn3|chr2 (143884162-143884026) | |
| 504-623, gnl|tetNig1|chr7 (2653413-2653543) | |
| 504-623, gnl|xenTro1|scaffold_570 (332799-332666) | |
| 675-804, gnl|bosTau2|chr12 (14833256-14833127) | |
| 675-804, gnl|canFam2|chr25 (6659305-6659155) | |
| 675-804, gnl|danRer3|chr10 (32345371-32345520) | |
| 675-804, gnl|dasNov1|scaffold_61916 (8317-8175) | |
| 675-804, gnl|echTel1|scaffold_294521 (44668-44818) | |
| 675-804, gnl|fr1|chrUn (229952564-229952712) | |
| 675-804, gnl|galGal2|chr1 (164376170-164376021) | |
| 675-804, gnl|hg17|chr13 (36505582-36505732) | |
| 675-804, gnl|Hg17|chr13 (36505728-36505599) | |
| 675-804, gnl|loxAfr1|scaffold_66899 (8793-8642) | |
| 675-804, gnl|mm7|chr3 (54837611-54837461) | |
| 675-804, gnl|Mm7|chr3 (54837463-54837592) | |
| 675-804, gnl|monDom2|scaffold_15 (49038586-49038736) | |
| 675-804, gnl|oryCun1|scaffold_152360 (4972-5120) | |
| 675-804, gnl|panTro1|chr14_random (9216468-9216318) | |
| 675-804, gnl|rheMac2|chr17 (16237951-16238101) | |
| 675-804, gnl|rn3|chr2 (143885507-143885357) | |
| 675-804, gnl|tetNig1|chr7 (2652871-2653021) | |
| 675-804, gnl|xenTro1|scaffold_570 (334296-334154) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fli (0.202881) | |
| med (0.116252) | |
| cbl (0.114797) |