Ss1.1-Pig4-TMW8029A10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATCGGGTGAAAGTACTGGTGTTGGGAGACTCAGGTGTTGGGAAATCTTCACTAGTTCATC TTCTATGCCAAAATCAAGTGCTGGGAAATCCATCATGGACTGTGGGCTGCTCAGTAGATG TCAGAGTTCATGACTACAAAGAAGGAACCCCAGAAGAGAAGACCTACTATATAGAATTAT GGGATGTTGGAGGCTCGGTGGGCAGTGCCAGCAGTGTGAAAAGCACAAGAGCAGTATTCT ACAACTCTGTAAATGGTATTATTTTAGTACATGACTTAACAAATAAGAAGTCATCCCAAA ATTTGTATCGTTGGTCATTGGAAGCTCTCAACAGGGATCTGGTGCCAACTGGAGTCTTGG TAACAAATGGGGATTATGACCGGGAACAGTTTGCTGATAACCAAATCCCACTGTTGGTAA TAGGGACTAAACTGGATCAGATTCATGAAACCAAGCGCCATGAAGTTTTAACTAGGACTG CTTTCCTGGCTGAGGATTTCAATGCAGAAGAGATTAATTTGGATTGCACAAATCCACGGT ACTTAGCTGCAGGTTCTTCCAATGCTGTCAAGCTCAGTAGGTTTTTTGATAAGGTCATAG AGAAGAGATACTTTTTAAGAGATGGTAATCAGATTCCAGGCTTTCCTGATCGAAAAAGGT TTGGAGGAGGAACATTAAAGAGCTTACATTATGACTGAATTACACTCATCCTTTGGAAGA GGAAGCAATTGGTGACAGTTTTTCACAGCGTTCTCCTTGCTGTTTCGATTATTCCTGTCC CAGCCTTTTAGCAAAATCATCTTAAAATGCTACCCTTCAGCCTCGCCGTTTAATGGAAAA CTGAAAGAAAGTGACAGCGTGGGAGGTCCAAACTTTGTCCCCATTCTCTCTGTTCCTCAC CTTTTTGTCCCTTTTTATAGATTATATAAAAGCCTTGTGGAAATATGAGATGTTGTCAAA ATGATGCAGTAAATGAGCAGTGACAGAATGCTGCAGAGAAAATTTACTCTTGCTTAGAAC TGGAGGGGTTTTATGGGTCTGTAATTTTCCCACACTCCTTGCTGAAGACTTAATTAAGTA CTACAAAAATGTATCTCTATTGTTTTACCTTCTTGAGGGGAAAGGTTATGTTAACCAGCC CTGAGTTGTCCACCCCAAACAATCTCTGTCATTTTCCAAGAAGCAAAATGCTGTTATTTA ATTGTCTCCACCTTCATCACACACAAGGATGCCTAATAATAGCAACCCGTGTCTTTCTCT CCTCTCCTTTGCAAATGGCTCAGTGGCTGGAAGAGGCGGGCTAATAGCTGGAGTTAAATA TGAATAGATTAATAATACATAGAGAACAGCAGTACCAGAAAAGAAGACTTCTGCAAGAAA CTGACAGCTCACTAAATCCTTCACTCTTTAGGTTACAGCTGTCTGCATCCCCTTACTGTT TTCTTTTTGGAAATAGGTAGGATGAAATCGCAGACCTGCATAAGAACAGCAAGTGAGATT TACAGCCTCTTCAATTTTTTTTTTTTTTTGAAGGAAAAGTCAACTCCTAAAATGCCTTTT GACTATAGTCCATAAACTGAGAGTATTATTTGTTGTGTCAACAATGTATTTATGGAGAAA AGTAAAAATAAGTTCCACAGCAATACATTTACATGAATTATGGACTAGTATTCTTGGATG TCATAATCCAAAGTTTTTGGGGGGTGGTGTGTGTGTACATGCATAATTGTTCATCACTTT TTTTACCCATCTTCTTTGCTTGTATAATTCCCTTTGCCCCAGTTCTTTGTTAATGTATAA ACCTGTTTTACAAAAACTGTAATTTGCTGCCTTATTCAACAACACCTTTTCACACATATT CTCTCTCTGGCTCTGGCACGTCTCTGCACTCCTGATTTTGCTCCATATTAAAATATAATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATCGGGTGAAAGTACTGGTGTTGGGAGACTCAGGTGTTGGGAAATCTTCACTAGTTCATC TTCTATGCCAAAATCAAGTGCTGGGAAATCCATCATGGACTGTGGGCTGCTCAGTAGATG TCAGAGTTCATGACTACAAAGAAGGAACCCCAGAAGAGAAGACCTACTATATAGAATTAT GGGATGTTGGAGGCTCGGTGGGCAGTGCCAGCAGTGTGAAAAGCACAAGAGCAGTATTCT ACAACTCTGTAAATGGTATTATTTTAGTACATGACTTAACAAATAAGAAGTCATCCCAAA ATTTGTATCGTTGGTCATTGGAAGCTCTCAACAGGGATCTGGTGCCAACTGGAGTCTTGG TAACAAATGGGGATTATGACCGGGAACAGTTTGCTGATAACCAAATCCCACTGTTGGTAA TAGGGACTAAACTGGATCAGATTCATGAAACCAAGCGCCATGAAGTTTTAACTAGGACTG CTTTCCTGGCTGAGGATTTCAATGCAGAAGAGATTAATTTGGATTGCACAAATCCACGGT ACTTAGCTGCAGGTTCTTCCAATGCTGTCAAGCTCAGTAGGTTTTTTGATAAGGTCATAG AGAAGAGATACTTTTTAAGAGATGGTAATCAGATTCCAGGCTTTCCTGATCGAAAAAGGT TTGGAGGAGGAACATTAAAGAGCTTACATTATGACTGAATTACACTCATCCTTTGGAAGA GGAAGCAATTGGTGACAGTTTTTCACAGCGTTCTCCTTGCTGTTTCGATTATTCCTGTCC CAGCCTTTTAGCAAAATCATCTTAAAATGCTACCCTTCAGCCTCGCCGTTTAATGGAAAA CTGAAAGAAAGTGACAGCGTGGGAGGTCCAAACTTTGTCCCCATTCTCTCTGTTCCTCAC CTTTTTGTCCCTTTTTATAGATTATATAAAAGCCTTGTGGAAATATGAGATGTTGTCAAA ATGATGCAGTAAATGAGCAGTGACAGAATGCTGCAGAGAAAATTTACTCTTGCTTAGAAC TGGAGGGGTTTTATGGGTCTGTAATTTTCCCACACTCCTTGCTGAAGACTTAATTAAGTA CTACAAAAATGTATCTCTATTGTTTTACCTTCTTGAGGGGAAAGGTTATGTTAACCAGCC CTGAGTTGTCCACCCCAAACAATCTCTGTCATTTTCCAAGAAGCAAAATGCTGTTATTTA ATTGTCTCCACCTTCATCACACACAAGGATGCCTAATAATAGCAACCCGTGTCTTTCTCT CCTCTCCTTTGCAAATGGCTCAGTGGCTGGAAGAGGCGGGCTAATAGCTGGAGTTAAATA TGAATAGATTAATAATACATAGAGAACAGCAGTACCAGAAAAGAAGACTTCTGCAAGAAA CTGACAGCTCACTAAATCCTTCACTCTTTAGGTTACAGCTGTCTGCATCCCCTTACTGTT TTCTTTTTGGAAATAGGTAGGATGAAATCGCAGACCTGCATAAGAACAGCAAGTGAGATT TACAGCCTCTTCAATTTTTTTTTTTTTTTGAAGGAAAAGTCAACTCCTAAAATGCCTTTT GACTATAGTCCATAAACTGAGAGTATTATTTGTTGTGTCAACAATGTATTTATGGAGAAA AGTAAAAATAAGTTCCACAGCAATACATTTACATGAATTATGGACTAGTATTCTTGGATG TCATAATCCAAAGTTTTTGGGGGGTGGTGTGTGTGTACATGCATAATTGTTCATCACTTT TTTTACCCATCTTCTTTGCTTGTATAATTCCCTTTGCCCCAGTTCTTTGTTAATGTATAA ACCTGTTTTACAAAAACTGTAATTTGCTGCCTTATTCAACAACACCTTTTCACACATATT CTCTCTCTGGCTCTGGCACGTCTCTGCACTCCTGATTTTGCTCCATATTAAAATATAATA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 157-258, gnl|bosTau2|chr1 (30985552-30985451) | |
| 157-258, gnl|canFam2|chr33 (27174064-27174171) | |
| 157-258, gnl|danRer3|chr9 (30604457-30604350) | |
| 157-258, gnl|dasNov1|scaffold_16828 (46316-46404) | |
| 157-258, gnl|echTel1|scaffold_276739 (81711-81604) | |
| 157-258, gnl|fr1|chrUn (136781476-136781579) | |
| 157-258, gnl|galGal2|chr1 (73901279-73901172) | |
| 157-258, gnl|hg17|chr3 (121911309-121911416) | |
| 157-258, gnl|Hg17|chr3 (121911415-121911314) | |
| 157-258, gnl|loxAfr1|scaffold_9173 (4902-4795) | |
| 157-258, gnl|mm7|chr16 (37265339-37265232) | |
| 157-258, gnl|Mm7|chr16 (37265231-37265332) | |
| 157-258, gnl|monDom2|scaffold_24 (17650368-17650475) | |
| 157-258, gnl|panTro1|chr2 (123657010-123657117) | |
| 157-258, gnl|rheMac2|chr2 (40756011-40756118) | |
| 157-258, gnl|rn3|chr11 (65016975-65017082) | |
| 157-258, gnl|tetNig1|chr2 (14839189-14839292) | |
| 370-522, gnl|bosTau2|chr1 (30978768-30978616) | |
| 370-522, gnl|canFam2|chr33 (27166616-27166816) | |
| 370-522, gnl|canFam2|chr33 (27166816-27166635) | |
| 370-522, gnl|danRer3|chr9 (30606025-30605861) | |
| 370-522, gnl|danRer3|chr9 (30605861-30606025) | |
| 370-522, gnl|dasNov1|scaffold_1933 (52798-52998) | |
| 370-522, gnl|dasNov1|scaffold_1933 (52998-52817) | |
| 370-522, gnl|echTel1|scaffold_252862 (5129-4928) | |
| 370-522, gnl|echTel1|scaffold_252862 (4928-5109) | |
| 370-522, gnl|fr1|chrUn (136781001-136781206) | |
| 370-522, gnl|fr1|chrUn (136781206-136781022) | |
| 370-522, gnl|galGal2|chr1 (73905307-73905110) | |
| 370-522, gnl|galGal2|chr1 (73905110-73905293) | |
| 370-522, gnl|hg17|chr3 (121899931-121900131) | |
| 370-522, gnl|Hg17|chr3 (121900111-121899959) | |
| 370-522, gnl|hg17|chr3_random (2877-3058) | |
| 370-522, gnl|loxAfr1|scaffold_9173 (14179-13979) | |
| 370-522, gnl|loxAfr1|scaffold_9173 (13979-14160) | |
| 370-522, gnl|mm7|chr16 (37272176-37271976) | |
| 370-522, gnl|mm7|chr16 (37271976-37272157) | |
| 370-522, gnl|Mm7|chr16 (37271994-37272146) | |
| 370-522, gnl|monDom2|scaffold_24 (17632043-17632243) | |
| 370-522, gnl|monDom2|scaffold_24 (17632243-17632062) | |
| 370-522, gnl|oryCun1|scaffold_201017 (44672-44872) | |
| 370-522, gnl|oryCun1|scaffold_201017 (44872-44691) | |
| 370-522, gnl|panTro1|chr2 (123645633-123645833) | |
| 370-522, gnl|panTro1|chr2 (123645833-123645652) | |
| 370-522, gnl|rheMac2|chr2 (40745429-40745629) | |
| 370-522, gnl|rheMac2|chr2 (40745629-40745448) | |
| 370-522, gnl|rn3|chr11 (65009758-65009957) | |
| 370-522, gnl|rn3|chr11 (65009957-65009776) | |
| 370-522, gnl|xenTro1|scaffold_905 (320755-320585) | |
| 370-522, gnl|xenTro1|scaffold_905 (320585-320751) | |
| 783-1920, gnl|bosTau2|chr1 (30970190-30969055) | |
| 783-1920, gnl|Hg17|chr3 (121891399-121890142) | |
| 783-1920, gnl|Mm7|chr16 (37279435-37280753) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 157-258, gnl|bosTau2|chr1 (30985552-30985451) | |
| 157-258, gnl|canFam2|chr33 (27174064-27174171) | |
| 157-258, gnl|danRer3|chr9 (30604457-30604350) | |
| 157-258, gnl|dasNov1|scaffold_16828 (46316-46404) | |
| 157-258, gnl|echTel1|scaffold_276739 (81711-81604) | |
| 157-258, gnl|fr1|chrUn (136781476-136781579) | |
| 157-258, gnl|galGal2|chr1 (73901279-73901172) | |
| 157-258, gnl|hg17|chr3 (121911309-121911416) | |
| 157-258, gnl|Hg17|chr3 (121911415-121911314) | |
| 157-258, gnl|loxAfr1|scaffold_9173 (4902-4795) | |
| 157-258, gnl|mm7|chr16 (37265339-37265232) | |
| 157-258, gnl|Mm7|chr16 (37265231-37265332) | |
| 157-258, gnl|monDom2|scaffold_24 (17650368-17650475) | |
| 157-258, gnl|panTro1|chr2 (123657010-123657117) | |
| 157-258, gnl|rheMac2|chr2 (40756011-40756118) | |
| 157-258, gnl|rn3|chr11 (65016975-65017082) | |
| 157-258, gnl|tetNig1|chr2 (14839189-14839292) | |
| 370-522, gnl|bosTau2|chr1 (30978768-30978616) | |
| 370-522, gnl|canFam2|chr33 (27166616-27166816) | |
| 370-522, gnl|canFam2|chr33 (27166816-27166635) | |
| 370-522, gnl|danRer3|chr9 (30606025-30605861) | |
| 370-522, gnl|danRer3|chr9 (30605861-30606025) | |
| 370-522, gnl|dasNov1|scaffold_1933 (52798-52998) | |
| 370-522, gnl|dasNov1|scaffold_1933 (52998-52817) | |
| 370-522, gnl|echTel1|scaffold_252862 (5129-4928) | |
| 370-522, gnl|echTel1|scaffold_252862 (4928-5109) | |
| 370-522, gnl|fr1|chrUn (136781001-136781206) | |
| 370-522, gnl|fr1|chrUn (136781206-136781022) | |
| 370-522, gnl|galGal2|chr1 (73905307-73905110) | |
| 370-522, gnl|galGal2|chr1 (73905110-73905293) | |
| 370-522, gnl|hg17|chr3 (121899931-121900131) | |
| 370-522, gnl|Hg17|chr3 (121900111-121899959) | |
| 370-522, gnl|hg17|chr3_random (2877-3058) | |
| 370-522, gnl|loxAfr1|scaffold_9173 (14179-13979) | |
| 370-522, gnl|loxAfr1|scaffold_9173 (13979-14160) | |
| 370-522, gnl|mm7|chr16 (37272176-37271976) | |
| 370-522, gnl|mm7|chr16 (37271976-37272157) | |
| 370-522, gnl|Mm7|chr16 (37271994-37272146) | |
| 370-522, gnl|monDom2|scaffold_24 (17632043-17632243) | |
| 370-522, gnl|monDom2|scaffold_24 (17632243-17632062) | |
| 370-522, gnl|oryCun1|scaffold_201017 (44672-44872) | |
| 370-522, gnl|oryCun1|scaffold_201017 (44872-44691) | |
| 370-522, gnl|panTro1|chr2 (123645633-123645833) | |
| 370-522, gnl|panTro1|chr2 (123645833-123645652) | |
| 370-522, gnl|rheMac2|chr2 (40745429-40745629) | |
| 370-522, gnl|rheMac2|chr2 (40745629-40745448) | |
| 370-522, gnl|rn3|chr11 (65009758-65009957) | |
| 370-522, gnl|rn3|chr11 (65009957-65009776) | |
| 370-522, gnl|xenTro1|scaffold_905 (320755-320585) | |
| 370-522, gnl|xenTro1|scaffold_905 (320585-320751) | |
| 783-1920, gnl|bosTau2|chr1 (30970190-30969055) | |
| 783-1920, gnl|Hg17|chr3 (121891399-121890142) | |
| 783-1920, gnl|Mm7|chr16 (37279435-37280753) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| tes (0.415628) | |
| vin (0.332557) | |
| ski (0.29347) | |
| aor (0.195274) | |
| gul (0.177588) | |
| mcp (0.170648) | |
| liv (0.146284) | |
| lin (0.145603) | |
| spl (0.143184) | |
| kid (0.129735) | |
| eru (0.120048) | |
| cty (0.10408) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.415628) | |
| vin (0.332557) | |
| ski (0.29347) | |
| aor (0.195274) | |
| gul (0.177588) | |
| mcp (0.170648) | |
| liv (0.146284) | |
| lin (0.145603) | |
| spl (0.143184) | |
| kid (0.129735) | |
| eru (0.120048) | |
| cty (0.10408) |