Non-Coding RNA Search

Ss1.1-Pig4-TMW8029A12.3

Sequence:


               
               TTATGAGGAACGGAGCAGGACCAAGGGTGGTGGGCAGCAGGCTGACCGAGGCTCTGACCG
TACCCCTGAGCGCAGCCGCAAGGAAAATCACTCCAGTGAAGGGACCAAGGAATTGAGCGG
CAACTCCCTCAGCAACAGCAGACATGGGGCTGAGGAGCGGAGCCACCACCACCACCATGA
GGCTCCAGACTCTTCCCACGGGAAGAAGACACGAGAGAGCGAGCGCAATCATCGGACCAC
TGAGGCTGAAACCAAGCCTCTGGAAGAGCCAAAACATGAGACCAAAAAGCTCAAGAATCT
TTCAGAGTATGCCCAGACACTGCAGCTGGGTTGGAATGGGCTTCTAGTGTTGAAAAACAG
CTGCTTCCCGACATCTATGCACATCCTAGAGGGGGACCAGGGGGTTATCAGCGGTCTCCT
CAAAGACCACACTTCTGGGAGTAAGCTGACCCAGCTGAAGATTGCCCAGCGCCTTCGACT
GGACCAGCCCAAGCTCGATGAGGTCACACGACGCATCAAGCAGGGGAGCCCCAATGGCTA
CGCAGTGCTCCTAGCCACCCAGGCGACCCCCAGTGGGCCTGGCACTGAGGGGATGCCCAC
AGTGGAGCCAGGCCTACAGAGGCGGCTTCTCAGGAACCTGGTCTCCTACTTGAAACAGAA
GCAGGCTGCAGGGGTGATCAGCCTGCCAGTAGGTGGGTCCAAAGGCAGAGACAGCACAGG
CATGCTCTATGCCTTCCCGCCTTGCGACTTTTCACAGCAGTACCTCCAGTCAGCACTGAG
GACATTGGGCAAGCTAGAAGAAGAACACATGGTGATAGTTATAGTAAGAGACACAGCCTA
GCCCAAACCTGTCTTTTCCACTCATTTGTGTCACAAAAGCAGTTATTTTAAAATCTGATC
CCCCTCCCTTTTTCCCATCTTACCCCTTGGTTTGAATTCTCTGCTGGGTTATTTCAGTTG
GTTTGGTAGGGGACCAAAGTCCTGTCCTCCGCCAGAACTAAGTTCTTAGGTTTGGGGGTT
TTTTCCTTTTTTTACAGTGATGAGAAGGGACTCCTGTCATGTTGGTTTCTAGTGTATGAA
ATACTGTCTGCTGTGTTCTGTATTATTTTTTGACTAACTGTATGGAAAGTTGTCAGTAAA
TACTTTGTCAGAGGATGGATTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATGAGGAACGGAGCAGGACCAAGGGTGGTGGGCAGCAGGCTGACCGAGGCTCTGACCG
TACCCCTGAGCGCAGCCGCAAGGAAAATCACTCCAGTGAAGGGACCAAGGAATTGAGCGG
CAACTCCCTCAGCAACAGCAGACATGGGGCTGAGGAGCGGAGCCACCACCACCACCATGA
GGCTCCAGACTCTTCCCACGGGAAGAAGACACGAGAGAGCGAGCGCAATCATCGGACCAC
TGAGGCTGAAACCAAGCCTCTGGAAGAGCCAAAACATGAGACCAAAAAGCTCAAGAATCT
TTCAGAGTATGCCCAGACACTGCAGCTGGGTTGGAATGGGCTTCTAGTGTTGAAAAACAG
CTGCTTCCCGACATCTATGCACATCCTAGAGGGGGACCAGGGGGTTATCAGCGGTCTCCT
CAAAGACCACACTTCTGGGAGTAAGCTGACCCAGCTGAAGATTGCCCAGCGCCTTCGACT
GGACCAGCCCAAGCTCGATGAGGTCACACGACGCATCAAGCAGGGGAGCCCCAATGGCTA
CGCAGTGCTCCTAGCCACCCAGGCGACCCCCAGTGGGCCTGGCACTGAGGGGATGCCCAC
AGTGGAGCCAGGCCTACAGAGGCGGCTTCTCAGGAACCTGGTCTCCTACTTGAAACAGAA
GCAGGCTGCAGGGGTGATCAGCCTGCCAGTAGGTGGGTCCAAAGGCAGAGACAGCACAGG
CATGCTCTATGCCTTCCCGCCTTGCGACTTTTCACAGCAGTACCTCCAGTCAGCACTGAG
GACATTGGGCAAGCTAGAAGAAGAACACATGGTGATAGTTATAGTAAGAGACACAGCCTA
GCCCAAACCTGTCTTTTCCACTCATTTGTGTCACAAAAGCAGTTATTTTAAAATCTGATC
CCCCTCCCTTTTTCCCATCTTACCCCTTGGTTTGAATTCTCTGCTGGGTTATTTCAGTTG
GTTTGGTAGGGGACCAAAGTCCTGTCCTCCGCCAGAACTAAGTTCTTAGGTTTGGGGGTT
TTTTCCTTTTTTTACAGTGATGAGAAGGGACTCCTGTCATGTTGGTTTCTAGTGTATGAA
ATACTGTCTGCTGTGTTCTGTATTATTTTTTGACTAACTGTATGGAAAGTTGTCAGTAAA
TACTTTGTCAGAGGATGGATTTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|291844|gb|AAA72367.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|291844|gb|AAA72367.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               80-196, - strand, RNAz p=0.993153
               

               
               237-356, - strand, RNAz p=0.720446
               

               
               517-796, - strand, RNAz p=0.968232

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-196, - strand, RNAz p=0.993153
               

               
               237-356, - strand, RNAz p=0.720446
               

               
               517-796, - strand, RNAz p=0.968232

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-1164, gnl|bosTau2|chr22 (37363081-37364256)
               

               
               1-1164, gnl|Hg17|chr3 (51405700-51406866)
               

               
               1-1164, gnl|Mm7|chr9 (106614595-106613435)
               


               
               545-1002, gnl|bosTau2|chr20 (20570692-20571166)
               

               
               545-1002, gnl|Hg17|chr3 (51406247-51406688)
               

               
               545-1002, gnl|Mm7|chr9 (106614048-106613614)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1164, gnl|bosTau2|chr22 (37363081-37364256)
               

               
               1-1164, gnl|Hg17|chr3 (51405700-51406866)
               

               
               1-1164, gnl|Mm7|chr9 (106614595-106613435)
               


               
               545-1002, gnl|bosTau2|chr20 (20570692-20571166)
               

               
               545-1002, gnl|Hg17|chr3 (51406247-51406688)
               

               
               545-1002, gnl|Mm7|chr9 (106614048-106613614)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cga (0.279096)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

	80-196, - strand, RNAz p=0.993153
	237-356, - strand, RNAz p=0.720446
	517-796, - strand, RNAz p=0.968232

	1-1164, gnl\|bosTau2\|chr22 (37363081-37364256)
	1-1164, gnl\|Hg17\|chr3 (51405700-51406866)
	1-1164, gnl\|Mm7\|chr9 (106614595-106613435)

	545-1002, gnl\|bosTau2\|chr20 (20570692-20571166)
	545-1002, gnl\|Hg17\|chr3 (51406247-51406688)
	545-1002, gnl\|Mm7\|chr9 (106614048-106613614)