Non-Coding RNA Search

Ss1.1-Pig4-TMW8029A12.5

Sequence:


               
               CTGGACCCAGCGTGTCAGAGGTGGAGCTGAGACGGGCTTTCGAAAAGTATGGCATCATTG
AGGAGGTGGTCATCAAGAGACCCGCCCGTGGTCAGGGCGGTGCGTATGCCTTTCTCAAGT
TCCAGAACCTGGATATGGCCCATAGAGCTAAGGTGGCCATGTCAGGTCGGGTGATCGGCC
GCAACCCCATTAAGATAGGCTACGGCAAGGCGAACCCCACTACTCGCCTCTGGGTGGGTG
GCCTGGGACCCAACACCTCACTGGCGGCTCTGGCCCGGGAGTTTGACCGCTTTGGGAGCA
TACGGACCATTGATCACGTCAAAGGAGATAGCTTTGCTTACATCCAGTACGAGAGCTTGG
ACGCAGCGCAGGCCGCCTGTGCTAAAATGAGGGGCTTTCCCTTGGGTGGTCCAGACCGCA
GGCTGCGGGTGGATTTTGCCAAAGCAGAGGAGACTCGGTATCCCCAGCAGTACCAGCCCT
CACCCCTCCCTGTGCATTACGAACTTCTCCCTGATGGATATACCCGTCATCGAAACCTGG
ATGCCGACCTGCGGGTGCGGGATAGGACCCCCCCACACCTCCTGTACTCGGACCGAGACC
GGACCTTCTTGGAAGGGGACTGGACCAGCCCCAGTAAAAGTTCTGACCGCCGGAACAGCC
TGGAAGGGTACAGCCGCTCAGTGCGCAGCCGGAGTGGCGAACGCTGGGGAGGAGATGGTG
ACCGGGGCCTGCCCAAGCCCTGGGAGGAGAGGCGGAAACGGAGAAGCCTTTCCAGTGATC
GAGGGAGGACCACCCACTCCCCTTATGAGGAACGGAGCAGGACCAAGGGTGGTGGGCAGC
AGGCTGACCGAGGCTCTGACCGTACCCCTGAGCGCAGCCGCAAGGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGACCCAGCGTGTCAGAGGTGGAGCTGAGACGGGCTTTCGAAAAGTATGGCATCATTG
AGGAGGTGGTCATCAAGAGACCCGCCCGTGGTCAGGGCGGTGCGTATGCCTTTCTCAAGT
TCCAGAACCTGGATATGGCCCATAGAGCTAAGGTGGCCATGTCAGGTCGGGTGATCGGCC
GCAACCCCATTAAGATAGGCTACGGCAAGGCGAACCCCACTACTCGCCTCTGGGTGGGTG
GCCTGGGACCCAACACCTCACTGGCGGCTCTGGCCCGGGAGTTTGACCGCTTTGGGAGCA
TACGGACCATTGATCACGTCAAAGGAGATAGCTTTGCTTACATCCAGTACGAGAGCTTGG
ACGCAGCGCAGGCCGCCTGTGCTAAAATGAGGGGCTTTCCCTTGGGTGGTCCAGACCGCA
GGCTGCGGGTGGATTTTGCCAAAGCAGAGGAGACTCGGTATCCCCAGCAGTACCAGCCCT
CACCCCTCCCTGTGCATTACGAACTTCTCCCTGATGGATATACCCGTCATCGAAACCTGG
ATGCCGACCTGCGGGTGCGGGATAGGACCCCCCCACACCTCCTGTACTCGGACCGAGACC
GGACCTTCTTGGAAGGGGACTGGACCAGCCCCAGTAAAAGTTCTGACCGCCGGAACAGCC
TGGAAGGGTACAGCCGCTCAGTGCGCAGCCGGAGTGGCGAACGCTGGGGAGGAGATGGTG
ACCGGGGCCTGCCCAAGCCCTGGGAGGAGAGGCGGAAACGGAGAAGCCTTTCCAGTGATC
GAGGGAGGACCACCCACTCCCCTTATGAGGAACGGAGCAGGACCAAGGGTGGTGGGCAGC
AGGCTGACCGAGGCTCTGACCGTACCCCTGAGCGCAGCCGCAAGGAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|40254294|ref|NP_780611.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|40254294|ref|NP_780611.2|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-239, + strand, RNAz p=0.7552

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, + strand, RNAz p=0.7552

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-888, gnl|bosTau2|chr22 (37362279-37363166)
               

               
               2-888, gnl|Hg17|chr3 (51404901-51405785)
               

               
               2-888, gnl|Mm7|chr9 (106615397-106614510)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-888, gnl|bosTau2|chr22 (37362279-37363166)
               

               
               2-888, gnl|Hg17|chr3 (51404901-51405785)
               

               
               2-888, gnl|Mm7|chr9 (106615397-106614510)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	2-888, gnl\|bosTau2\|chr22 (37362279-37363166)
	2-888, gnl\|Hg17\|chr3 (51404901-51405785)
	2-888, gnl\|Mm7\|chr9 (106615397-106614510)