Ss1.1-Pig4-TMW8029A13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTCGGCCTGCAGCACTGCCTGGAGCCGGCTCGCAGCAGGGTGTGCAGAGCTTCGAGGCC CTCTGCGGGCGGCAGGTCCTCCCAGCAGCCCACGCCCCCGCAGCAGGCGCCGCCCGGGCA GCCCCCGCAGGCCACGTTCGTCGCCCACAAGGAGATCAAGTTGACGCTACTGAACAAGGC TGCCGAGAAAGGGAGCAGGAAGCGCTACGAGCCCTCGGACAAGGACAGGCAGAGTCCACC CCCAGCCAAGCGGGCGAACCTCTCCCCAGACCGAGGTTCTCGGGACCGGAAGTCAGGTGG CAGACTCAGCTCCCCGAAGCCGGAGCGGCAGAGGGGCCAGAATTCCAAGGCCCCCGGGGC CCCGACAGACAGGAAGCGCCCGCTGTCACCGCCGTCCAAGAGCTCCAGCAAGGTCACCAG CGTGCCCGGCAAAGCCTCGGACACCAGCAGCGCCGCCACCACGGCCGCCGGCAGCAAGTC AGGGAAGGCCAGCACGCTGTCGCGGCGCGAGGAGCTGCTGAAGCAGCTCAAGGCCGTGGA GGACGCCATCGCCCGCAAGCGGGCCAAGATCCCGGGGAAGGTGTAGCCCGCGCTGCCCGG GCGGGGACTCTCCTGTTTTTATCTGTAGGGTAAGCGCAGCCATTTTGGATTTTGCAGTTC ATATCTCACTTTGGCTGTGATTCTTTTTAAAAATGAAAAAAGAAAAAAAAAGTTTCTCAG CTGGAAAAGAAGCCACACGTGTAATGACGATGACGCTGAATCCCAGACCGAACCAGCCCC TTCCTGGCGCAGAAGTCCCGCGAGGTGGGCGCCGGGCAGGCGGCCGCGCTCCCGGCCCGA CGCCGATTTTATGTAAATTATGAGCCCCAGACGCCCATCTTCCCTCCCTCCGGTCAGGCG GGGTCAGGCGTCCCCACCGCCACGCCGTGTCCTCAGCACCTGACCCCACTGTCGCCAGGA ACACCACGTGCTGCCGAGCGTCCACCCCGCCCCCAGCGTCCCGCCTCCCCAGGATCAAAA CTATATATATTCTTGACTAAAGTCTGATTGGGAAATACTCCTATCTTTTATTTTAAGCAT CAAATTGTTTTAGTTGATTTAAAAAGGAAGAAAAAAACCCACAAAAGACCAAAAAAAGAA AGGCCGAGGGTAAGGTTGGGCGTCTTCAAGATGTGGAGGGTCCTTTTTGAGGGTCTCCTC AAATAAAATATTTTGATAAGCAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTCGGCCTGCAGCACTGCCTGGAGCCGGCTCGCAGCAGGGTGTGCAGAGCTTCGAGGCC CTCTGCGGGCGGCAGGTCCTCCCAGCAGCCCACGCCCCCGCAGCAGGCGCCGCCCGGGCA GCCCCCGCAGGCCACGTTCGTCGCCCACAAGGAGATCAAGTTGACGCTACTGAACAAGGC TGCCGAGAAAGGGAGCAGGAAGCGCTACGAGCCCTCGGACAAGGACAGGCAGAGTCCACC CCCAGCCAAGCGGGCGAACCTCTCCCCAGACCGAGGTTCTCGGGACCGGAAGTCAGGTGG CAGACTCAGCTCCCCGAAGCCGGAGCGGCAGAGGGGCCAGAATTCCAAGGCCCCCGGGGC CCCGACAGACAGGAAGCGCCCGCTGTCACCGCCGTCCAAGAGCTCCAGCAAGGTCACCAG CGTGCCCGGCAAAGCCTCGGACACCAGCAGCGCCGCCACCACGGCCGCCGGCAGCAAGTC AGGGAAGGCCAGCACGCTGTCGCGGCGCGAGGAGCTGCTGAAGCAGCTCAAGGCCGTGGA GGACGCCATCGCCCGCAAGCGGGCCAAGATCCCGGGGAAGGTGTAGCCCGCGCTGCCCGG GCGGGGACTCTCCTGTTTTTATCTGTAGGGTAAGCGCAGCCATTTTGGATTTTGCAGTTC ATATCTCACTTTGGCTGTGATTCTTTTTAAAAATGAAAAAAGAAAAAAAAAGTTTCTCAG CTGGAAAAGAAGCCACACGTGTAATGACGATGACGCTGAATCCCAGACCGAACCAGCCCC TTCCTGGCGCAGAAGTCCCGCGAGGTGGGCGCCGGGCAGGCGGCCGCGCTCCCGGCCCGA CGCCGATTTTATGTAAATTATGAGCCCCAGACGCCCATCTTCCCTCCCTCCGGTCAGGCG GGGTCAGGCGTCCCCACCGCCACGCCGTGTCCTCAGCACCTGACCCCACTGTCGCCAGGA ACACCACGTGCTGCCGAGCGTCCACCCCGCCCCCAGCGTCCCGCCTCCCCAGGATCAAAA CTATATATATTCTTGACTAAAGTCTGATTGGGAAATACTCCTATCTTTTATTTTAAGCAT CAAATTGTTTTAGTTGATTTAAAAAGGAAGAAAAAAACCCACAAAAGACCAAAAAAAGAA AGGCCGAGGGTAAGGTTGGGCGTCTTCAAGATGTGGAGGGTCCTTTTTGAGGGTCTCCTC AAATAAAATATTTTGATAAGCAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 603-719, - strand, RNAz p=0.865172 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 603-719, - strand, RNAz p=0.865172 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 53-179, gnl|bosTau2|chr18 (12709717-12709591) | |
| 53-179, gnl|canFam2|chr5 (67708659-67708432) | |
| 53-179, gnl|danRer3|chr19 (8899248-8899054) | |
| 53-179, gnl|dasNov1|scaffold_30002 (14504-14732) | |
| 53-179, gnl|fr1|chrUn (305717931-305717689) | |
| 53-179, gnl|galGal2|chr11 (18733274-18733492) | |
| 53-179, gnl|hg17|chr16 (87221810-87222040) | |
| 53-179, gnl|Hg17|chr16 (87221903-87222029) | |
| 53-179, gnl|loxAfr1|scaffold_56311 (3938-3709) | |
| 53-179, gnl|mm7|chr8 (121055250-121055479) | |
| 53-179, gnl|Mm7|chr8 (121055342-121055468) | |
| 53-179, gnl|monDom2|scaffold_23 (8578014-8577789) | |
| 53-179, gnl|oryCun1|scaffold_158799 (5296-5522) | |
| 53-179, gnl|panTro1|chr18 (82222111-82222341) | |
| 53-179, gnl|rheMac2|chr20 (86782075-86782305) | |
| 53-179, gnl|rn3|chr19 (52692447-52692675) | |
| 53-179, gnl|tetNig1|chrUn_random (17896017-17895773) | |
| 53-179, gnl|xenTro1|scaffold_1104 (277045-276814) | |
| 370-867, gnl|bosTau2|chr18 (12707237-12706740) | |
| 370-867, gnl|Hg17|chr16 (87225007-87225498) | |
| 370-867, gnl|Mm7|chr8 (121058478-121059013) | |
| 929-1222, gnl|bosTau2|chr18 (12706720-12706422) | |
| 929-1222, gnl|Hg17|chr16 (87225538-87225873) | |
| 929-1222, gnl|Mm7|chr8 (121059032-121059365) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 53-179, gnl|bosTau2|chr18 (12709717-12709591) | |
| 53-179, gnl|canFam2|chr5 (67708659-67708432) | |
| 53-179, gnl|danRer3|chr19 (8899248-8899054) | |
| 53-179, gnl|dasNov1|scaffold_30002 (14504-14732) | |
| 53-179, gnl|fr1|chrUn (305717931-305717689) | |
| 53-179, gnl|galGal2|chr11 (18733274-18733492) | |
| 53-179, gnl|hg17|chr16 (87221810-87222040) | |
| 53-179, gnl|Hg17|chr16 (87221903-87222029) | |
| 53-179, gnl|loxAfr1|scaffold_56311 (3938-3709) | |
| 53-179, gnl|mm7|chr8 (121055250-121055479) | |
| 53-179, gnl|Mm7|chr8 (121055342-121055468) | |
| 53-179, gnl|monDom2|scaffold_23 (8578014-8577789) | |
| 53-179, gnl|oryCun1|scaffold_158799 (5296-5522) | |
| 53-179, gnl|panTro1|chr18 (82222111-82222341) | |
| 53-179, gnl|rheMac2|chr20 (86782075-86782305) | |
| 53-179, gnl|rn3|chr19 (52692447-52692675) | |
| 53-179, gnl|tetNig1|chrUn_random (17896017-17895773) | |
| 53-179, gnl|xenTro1|scaffold_1104 (277045-276814) | |
| 370-867, gnl|bosTau2|chr18 (12707237-12706740) | |
| 370-867, gnl|Hg17|chr16 (87225007-87225498) | |
| 370-867, gnl|Mm7|chr8 (121058478-121059013) | |
| 929-1222, gnl|bosTau2|chr18 (12706720-12706422) | |
| 929-1222, gnl|Hg17|chr16 (87225538-87225873) | |
| 929-1222, gnl|Mm7|chr8 (121059032-121059365) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nca (0.136874) |