Ss1.1-Pig4-TMW8029A17.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTCCTCCCTGGCCTGCACCACGTCCACCTCGGCCTCCACGACCACCTCTCCCTCCTCGA CCACTGCCTCGATCACCACCATGGTGCCCACTGTCCTGGTATCTATTGTCCTGCTGATAT CCACCACCCTGGTATCCACTTCCCGTATATGTCGATGTTTGGAAGCCACCATAACCACCG CCTTGATAGCCACCACTGTGGCCACCATGATAGCCACCTGGCTGGAAACCCGAATCTCGG TAACCACCATCTTGGTAGCCACCTCCTCCTCCACTCCCTCCATCTGTCCAGCCTCCTTGA TGCTTATTTCCTCTTCCTCCCCCTCGGCCACCATGGTCGTAGCCACCGCCACCACGTCCA CCTCTCCCTCCTCCTTGTTCATGACCTCCTCGTCCTCCATACGAGGAATGTTCGTAACCA CCTCTCCCTCCTCCTCGGCCTCCTGCTTGCTGCTGGGGGCCATCTTGCCTTTTCTGCCAT GGTGGCATCTCTGGGGGTGGAGGTTCAATTTCGTTGGGTCTACCTCCTCTGTCAGGAACC CTGCCCATCAATACCTTGTTGATGGCACAGGCAGTCTTTTCTCTTATAGAGCCACTGCTT GTCCTTAAAATCTTTGACAAGTCTTGTCTTGCGGCCAAAAGATGGGCAACAGCAATAGTA CTTTTAGGAGATAAGACTGAGCGTTTTGGCTGGTAAACCTTTGCTAATTTTTCAGTCTGA CTCTTAGCTCTGTCAGACCAGCCAAAAGACTGGACAGTGACATCCAAACGTTTTATTAGC AGCTTTCTCCGAACTTCATATTCATTGGCTATGGCTTGGTTAATTGCTTCTATCTTTTCC CAGTGGGCCGGTCCCATTGGCTTCTTCAATAAAGGCTTTCCCACATGATTAGGTGGAACT TTTGCTAATGTTTCCTTTAATTTTTTTTCAATCCCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTCCTCCCTGGCCTGCACCACGTCCACCTCGGCCTCCACGACCACCTCTCCCTCCTCGA CCACTGCCTCGATCACCACCATGGTGCCCACTGTCCTGGTATCTATTGTCCTGCTGATAT CCACCACCCTGGTATCCACTTCCCGTATATGTCGATGTTTGGAAGCCACCATAACCACCG CCTTGATAGCCACCACTGTGGCCACCATGATAGCCACCTGGCTGGAAACCCGAATCTCGG TAACCACCATCTTGGTAGCCACCTCCTCCTCCACTCCCTCCATCTGTCCAGCCTCCTTGA TGCTTATTTCCTCTTCCTCCCCCTCGGCCACCATGGTCGTAGCCACCGCCACCACGTCCA CCTCTCCCTCCTCCTTGTTCATGACCTCCTCGTCCTCCATACGAGGAATGTTCGTAACCA CCTCTCCCTCCTCCTCGGCCTCCTGCTTGCTGCTGGGGGCCATCTTGCCTTTTCTGCCAT GGTGGCATCTCTGGGGGTGGAGGTTCAATTTCGTTGGGTCTACCTCCTCTGTCAGGAACC CTGCCCATCAATACCTTGTTGATGGCACAGGCAGTCTTTTCTCTTATAGAGCCACTGCTT GTCCTTAAAATCTTTGACAAGTCTTGTCTTGCGGCCAAAAGATGGGCAACAGCAATAGTA CTTTTAGGAGATAAGACTGAGCGTTTTGGCTGGTAAACCTTTGCTAATTTTTCAGTCTGA CTCTTAGCTCTGTCAGACCAGCCAAAAGACTGGACAGTGACATCCAAACGTTTTATTAGC AGCTTTCTCCGAACTTCATATTCATTGGCTATGGCTTGGTTAATTGCTTCTATCTTTTCC CAGTGGGCCGGTCCCATTGGCTTCTTCAATAAAGGCTTTCCCACATGATTAGGTGGAACT TTTGCTAATGTTTCCTTTAATTTTTTTTCAATCCCG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 120-313, - strand, RNAz p=0.992605 | |
| 354-556, - strand, RNAz p=0.993424 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 120-313, - strand, RNAz p=0.992605 | |
| 354-556, - strand, RNAz p=0.993424 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC038581, - |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-556, gnl|bosTau2|chr11 (12293656-12294202) | |
| 1-556, gnl|Hg17|chr2 (33721615-33722164) | |
| 1-556, gnl|Mm7|chr17 (73828891-73829431) | |
| 723-840, gnl|bosTau2|chr11 (12296992-12297109) | |
| 723-840, gnl|canFam2|chr17 (29779737-29779863) | |
| 723-840, gnl|danRer3|chr17 (17174499-17174374) | |
| 723-840, gnl|dasNov1|scaffold_38791 (10769-10643) | |
| 723-840, gnl|echTel1|scaffold_318351 (4759-4885) | |
| 723-840, gnl|fr1|chrUn (272781177-272781051) | |
| 723-840, gnl|galGal2|chr3 (27354428-27354302) | |
| 723-840, gnl|hg17|chr2 (33723277-33723403) | |
| 723-840, gnl|Hg17|chr2 (33723280-33723397) | |
| 723-840, gnl|loxAfr1|scaffold_29338 (27839-27965) | |
| 723-840, gnl|mm7|chr17 (73829966-73830092) | |
| 723-840, gnl|Mm7|chr17 (73829969-73830086) | |
| 723-840, gnl|monDom2|scaffold_1 (140244883-140244757) | |
| 723-840, gnl|oryCun1|scaffold_207314 (460-334) | |
| 723-840, gnl|panTro1|chr12 (34750192-34750318) | |
| 723-840, gnl|rheMac2|chr13 (33563620-33563746) | |
| 723-840, gnl|rn3|chr6 (19802512-19802386) | |
| 723-840, gnl|tetNig1|chrUn_random (116868215-116868089) | |
| 723-840, gnl|xenTro1|scaffold_581 (150283-150408) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-556, gnl|bosTau2|chr11 (12293656-12294202) | |
| 1-556, gnl|Hg17|chr2 (33721615-33722164) | |
| 1-556, gnl|Mm7|chr17 (73828891-73829431) | |
| 723-840, gnl|bosTau2|chr11 (12296992-12297109) | |
| 723-840, gnl|canFam2|chr17 (29779737-29779863) | |
| 723-840, gnl|danRer3|chr17 (17174499-17174374) | |
| 723-840, gnl|dasNov1|scaffold_38791 (10769-10643) | |
| 723-840, gnl|echTel1|scaffold_318351 (4759-4885) | |
| 723-840, gnl|fr1|chrUn (272781177-272781051) | |
| 723-840, gnl|galGal2|chr3 (27354428-27354302) | |
| 723-840, gnl|hg17|chr2 (33723277-33723403) | |
| 723-840, gnl|Hg17|chr2 (33723280-33723397) | |
| 723-840, gnl|loxAfr1|scaffold_29338 (27839-27965) | |
| 723-840, gnl|mm7|chr17 (73829966-73830092) | |
| 723-840, gnl|Mm7|chr17 (73829969-73830086) | |
| 723-840, gnl|monDom2|scaffold_1 (140244883-140244757) | |
| 723-840, gnl|oryCun1|scaffold_207314 (460-334) | |
| 723-840, gnl|panTro1|chr12 (34750192-34750318) | |
| 723-840, gnl|rheMac2|chr13 (33563620-33563746) | |
| 723-840, gnl|rn3|chr6 (19802512-19802386) | |
| 723-840, gnl|tetNig1|chrUn_random (116868215-116868089) | |
| 723-840, gnl|xenTro1|scaffold_581 (150283-150408) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pgl (0.118483) |