Non-Coding RNA Search

Ss1.1-Pig4-TMW8029A19.3

Sequence:


               
               TTATCAGATCTCTTGAGAAAGGTAATTTCCAATTGCACTGTACCCCTGTATAAAAGTTGA
GAGGGAGGGAAAAAAAAGCCCTTCAGGTACTGGTTGGTAGGAGGAAAATGTCCTACAAAA
GATGAGCCTCTGCCCATCTAGCGCCCATACAGGGTTAGCTTATGATGATTCTCTTAATAA
GCAGATCTCTTTCCAAAACATACATTTTTTTTTTTTGTTCAGGCAGCTGCTTTTTATTGA
CAGACTTGATCATGGCATTTCAGTCATGGGGGTTAAGCACATTAATACTCTCGTTACTCA
GCATTGTCTATGGTTTCAAAAACTTCTTTTGCCAAGAGGGATGAGACAAAAAGCCAGACA
GAAATTTGACTCTGGTTTCCAGATATGTTAAAGGCCAGACTACAGAAGCCTCTGTTTACA
TGGCAGTTTCTTCTGTGTAAAATTAACGAATTAGGGCAGGATTCCTGAAGGGCTGGGAAG
AAGATGGGGCGGGGGGAATAGCTGGATCCCCAAATTCAGTATGAACACAGCTCCAGTCTT
GCTTACTTTTTCTTTGGGATTTTTTAAAAAATTCCTGGGTAGATGATAATATTCTTATTT
ACTTTAGAGCCACTCAAGATCTTACAAAACTAGAGCTGTAATTTCTGCCTTTTATACCAG
CCCTGGAAGGGTTATTCAGGAGCCTGCGGGGACATGGGACATGTCACCTGTTGAGGTAGA
AATGTCTCAGCTAAATCCCAAATCCTGGGGGAAGGGCAGGAACAGAAATGGGAGACAGCT
ATAAAATTGCCAGCCTGGCAAAGTCAAGTTTGTTTAAAAGAGGCCGACACTCTGATGTGC
TGCTTTTTTCGTCATGCCTGTTGATGTAAAGAGTGAGAGAGCAGAAGCTTACAGCCACTA
AGGTGTTCCAGTAAACCAGTTCCAGCCTTGCAGTTCTTGCAGTGTGCAACACACACACAC
TTTGTTGGGGTTAAAGGCCTGGTTCTTGGATGCTACTGCTAAATCCATATCGTTTGTTCA
GCCTTTATTGACAAATGGTAAGACTGCCTTAGAACTATGAAATAAAACGCAGTTTCTCCA
GTGTTGGAAAATCAGAGTATGAATGAACTCTTTCGTTTTGTTTTTCCTGTTAGGGGAGGG
TGGAGACAGGTCACCTCTGCAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATCAGATCTCTTGAGAAAGGTAATTTCCAATTGCACTGTACCCCTGTATAAAAGTTGA
GAGGGAGGGAAAAAAAAGCCCTTCAGGTACTGGTTGGTAGGAGGAAAATGTCCTACAAAA
GATGAGCCTCTGCCCATCTAGCGCCCATACAGGGTTAGCTTATGATGATTCTCTTAATAA
GCAGATCTCTTTCCAAAACATACATTTTTTTTTTTTGTTCAGGCAGCTGCTTTTTATTGA
CAGACTTGATCATGGCATTTCAGTCATGGGGGTTAAGCACATTAATACTCTCGTTACTCA
GCATTGTCTATGGTTTCAAAAACTTCTTTTGCCAAGAGGGATGAGACAAAAAGCCAGACA
GAAATTTGACTCTGGTTTCCAGATATGTTAAAGGCCAGACTACAGAAGCCTCTGTTTACA
TGGCAGTTTCTTCTGTGTAAAATTAACGAATTAGGGCAGGATTCCTGAAGGGCTGGGAAG
AAGATGGGGCGGGGGGAATAGCTGGATCCCCAAATTCAGTATGAACACAGCTCCAGTCTT
GCTTACTTTTTCTTTGGGATTTTTTAAAAAATTCCTGGGTAGATGATAATATTCTTATTT
ACTTTAGAGCCACTCAAGATCTTACAAAACTAGAGCTGTAATTTCTGCCTTTTATACCAG
CCCTGGAAGGGTTATTCAGGAGCCTGCGGGGACATGGGACATGTCACCTGTTGAGGTAGA
AATGTCTCAGCTAAATCCCAAATCCTGGGGGAAGGGCAGGAACAGAAATGGGAGACAGCT
ATAAAATTGCCAGCCTGGCAAAGTCAAGTTTGTTTAAAAGAGGCCGACACTCTGATGTGC
TGCTTTTTTCGTCATGCCTGTTGATGTAAAGAGTGAGAGAGCAGAAGCTTACAGCCACTA
AGGTGTTCCAGTAAACCAGTTCCAGCCTTGCAGTTCTTGCAGTGTGCAACACACACACAC
TTTGTTGGGGTTAAAGGCCTGGTTCTTGGATGCTACTGCTAAATCCATATCGTTTGTTCA
GCCTTTATTGACAAATGGTAAGACTGCCTTAGAACTATGAAATAAAACGCAGTTTCTCCA
GTGTTGGAAAATCAGAGTATGAATGAACTCTTTCGTTTTGTTTTTCCTGTTAGGGGAGGG
TGGAGACAGGTCACCTCTGCAATC

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               3-566, gnl|bosTau2|chr10 (52875893-52875316)
               

               
               3-566, gnl|Hg17|chr14 (67126197-67125635)
               

               
               3-566, gnl|Mm7|chr12 (77040444-77039821)
               


               
               585-1164, gnl|bosTau2|chr10 (52875058-52874471)
               

               
               585-1164, gnl|Hg17|chr14 (67125595-67125028)
               

               
               585-1164, gnl|Mm7|chr12 (77039606-77039069)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-566, gnl|bosTau2|chr10 (52875893-52875316)
               

               
               3-566, gnl|Hg17|chr14 (67126197-67125635)
               

               
               3-566, gnl|Mm7|chr12 (77040444-77039821)
               


               
               585-1164, gnl|bosTau2|chr10 (52875058-52874471)
               

               
               585-1164, gnl|Hg17|chr14 (67125595-67125028)
               

               
               585-1164, gnl|Mm7|chr12 (77039606-77039069)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

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               hyp (0.42851)
               

               
               cte (0.29274)
               

               
               ova (0.258264)
               

               
               nbm (0.198649)
               

               
               fbs (0.175346)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.42851)
               

               
               cte (0.29274)
               

               
               ova (0.258264)
               

               
               nbm (0.198649)
               

               
               fbs (0.175346)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

	3-566, gnl\|bosTau2\|chr10 (52875893-52875316)
	3-566, gnl\|Hg17\|chr14 (67126197-67125635)
	3-566, gnl\|Mm7\|chr12 (77040444-77039821)

	585-1164, gnl\|bosTau2\|chr10 (52875058-52874471)
	585-1164, gnl\|Hg17\|chr14 (67125595-67125028)
	585-1164, gnl\|Mm7\|chr12 (77039606-77039069)

	hyp (0.42851)
	cte (0.29274)
	ova (0.258264)
	nbm (0.198649)
	fbs (0.175346)
	tbr (0.154178)
	spl (0.143184)
	pty (0.142714)
	kid (0.129735)
	thg (0.126791)
	pgl (0.118483)
	cty (0.10408)