Ss1.1-Pig4-TMW8029A21.5
|
AACCACATCAAGCTCTGCAGGATCCTCCTTTGTCTTTGGCACTGGACCTTCAGCACCATC
TGCCAGTCCAGCGTTTGGTGCTAACCAGACCCCAACATTTGGTCAAAGTCAAGGTGCCAG
CCAGCCTAATCCCCCAGGCTTTGGATCTATAGCATCTTCAGCAGCATTATTTTCTGCTGG
TTCTCAGCCTGCACCACCTACTTTTGGGACAGTGTCGAGCAGCAGCCAGCCTCCTGTGTT
TGGACAGCAGCCTAGTCAGTCTGCATTTGGCTCTGGAACGGCTCCTAATTCCAGTTCCGT
TTTCCAGTTCGGTAGCAGCACTACAAATTTCAACTTCACAAACAACAATCCATCAGGAGT
GTTCACATTTGGTGCAAATCCCAGCATACCTGCAGCCTCAGCCCAGCCCTCGGGCTCAGG
GGGCTTTCCATTTAACCAGTCTCCAGGGGCGTTTACTGTGGGGTCAAATGGGAAAAACAT
ATTCTCTTCTTCGGGAACTTCACTCTCTGGTCGCAAGATAAAGACTGCTGTAAGACGCAG
GAAATAAAGGTCACGGTGATTGTACACCATTTTAACAACAGCTGGTGCCCTGCTTTCAGA
TACTGGATTGTACTATGTGCTGGGTCATCTGAAGTTAGATCTGCCTAAGGACTTCTTTAA
TTTTGGAATTTTCCTCCGTTTTTCTTTATAGAAGCCCCAACCTCACCTCTCCTGCCCCCC
CTTTTTAAAAAATAATAGCTAAGACTGGTGACTGACTCTTCAGCAAAAATATTTTATGAT
CCAGCAAATTATTCGCTGATTTGGCTTAGGCTGGCCGAACCCAGGAATTGAGTCTGCTCG
GAGAATGGCTTTGTATAGAACCTCTTCATCTGCACCACCACGTGCGTTGATACGCGTTTA
TACAACGCATTGAAATTGTAATTATATCTGAGGAATTCTGTATAGATTAGAGGATTTTGA
AATGAATGATTTCTCTGATGAGTTTGTGCTGGTGTATGTGTGAAATGAGTGAGTTGGGTG
TATCGTGCACTAAAATTTCTGATAGAGGAATCCTGATTAAAGAATGGTCCATGCTAAGGA
CTTGTTAGATCTAGTTCGTTCTCCATTTAATAATTATATGCTATTTCTATATTGTCATTC
TTCCGACTATCACCTGTCTTGCCTTTTTCATTATTTTATTATGAAACTTGTGTAAATACA
ATTTTGTTTCTGTACTTTTTTGGCATAACATAAATCTGTGAACTTGAAATTTTAATTTTG
TGTTAGAAAATTTTTTTGTTGTTTGTTTAGTCTTGTCTCAGATTTTATTATGTAAATCCC
ATTATTCAAAGTTGCCTAAATCCATTTGGAAATCTTTAAAAAAAAATTGGGGATTCTTAA
AGTGAATTTATTGGCTTTTCTGATCCAGTTTTGTTTGGACCAAAAACCAGTATTGTACAA
AGTATTAAGCATATATTTTTATATTTACTGAAATGGACTGTGGTGACTTTGGATAATAAG
GAAAAGTTTAATATTAAAGCCATGTTTATTACAGTATAATTAACATGTTAAACCATGGGA
TAAATGCCATCAATAAAAAATTATGAAATACTTTTTGTTCTAGTGTTAACTCATAGTGAA
GGTCAAGTGTTAGTAGAAGAGAACCTTTTTATAAAGGTTAACAGTGGTCAGAAGAGAGAT
TCCAAAGAACACGTTGACGTGATTTGGAGGGAAAGTGTCTCAAGGTACCTTGCTTTTTGT
CTGGTGCTAGGAACCACACCTACTTTGCGCACAAATTGACAAACCTTTTTAAAAGTTGAA
AATAAACACAAG
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Blue-coloured subsequences are predicted RNA structures by RNAz
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AACCACATCAAGCTCTGCAGGATCCTCCTTTGTCTTTGGCACTGGACCTTCAGCACCATC
TGCCAGTCCAGCGTTTGGTGCTAACCAGACCCCAACATTTGGTCAAAGTCAAGGTGCCAG
CCAGCCTAATCCCCCAGGCTTTGGATCTATAGCATCTTCAGCAGCATTATTTTCTGCTGG
TTCTCAGCCTGCACCACCTACTTTTGGGACAGTGTCGAGCAGCAGCCAGCCTCCTGTGTT
TGGACAGCAGCCTAGTCAGTCTGCATTTGGCTCTGGAACGGCTCCTAATTCCAGTTCCGT
TTTCCAGTTCGGTAGCAGCACTACAAATTTCAACTTCACAAACAACAATCCATCAGGAGT
GTTCACATTTGGTGCAAATCCCAGCATACCTGCAGCCTCAGCCCAGCCCTCGGGCTCAGG
GGGCTTTCCATTTAACCAGTCTCCAGGGGCGTTTACTGTGGGGTCAAATGGGAAAAACAT
ATTCTCTTCTTCGGGAACTTCACTCTCTGGTCGCAAGATAAAGACTGCTGTAAGACGCAG
GAAATAAAGGTCACGGTGATTGTACACCATTTTAACAACAGCTGGTGCCCTGCTTTCAGA
TACTGGATTGTACTATGTGCTGGGTCATCTGAAGTTAGATCTGCCTAAGGACTTCTTTAA
TTTTGGAATTTTCCTCCGTTTTTCTTTATAGAAGCCCCAACCTCACCTCTCCTGCCCCCC
CTTTTTAAAAAATAATAGCTAAGACTGGTGACTGACTCTTCAGCAAAAATATTTTATGAT
CCAGCAAATTATTCGCTGATTTGGCTTAGGCTGGCCGAACCCAGGAATTGAGTCTGCTCG
GAGAATGGCTTTGTATAGAACCTCTTCATCTGCACCACCACGTGCGTTGATACGCGTTTA
TACAACGCATTGAAATTGTAATTATATCTGAGGAATTCTGTATAGATTAGAGGATTTTGA
AATGAATGATTTCTCTGATGAGTTTGTGCTGGTGTATGTGTGAAATGAGTGAGTTGGGTG
TATCGTGCACTAAAATTTCTGATAGAGGAATCCTGATTAAAGAATGGTCCATGCTAAGGA
CTTGTTAGATCTAGTTCGTTCTCCATTTAATAATTATATGCTATTTCTATATTGTCATTC
TTCCGACTATCACCTGTCTTGCCTTTTTCATTATTTTATTATGAAACTTGTGTAAATACA
ATTTTGTTTCTGTACTTTTTTGGCATAACATAAATCTGTGAACTTGAAATTTTAATTTTG
TGTTAGAAAATTTTTTTGTTGTTTGTTTAGTCTTGTCTCAGATTTTATTATGTAAATCCC
ATTATTCAAAGTTGCCTAAATCCATTTGGAAATCTTTAAAAAAAAATTGGGGATTCTTAA
AGTGAATTTATTGGCTTTTCTGATCCAGTTTTGTTTGGACCAAAAACCAGTATTGTACAA
AGTATTAAGCATATATTTTTATATTTACTGAAATGGACTGTGGTGACTTTGGATAATAAG
GAAAAGTTTAATATTAAAGCCATGTTTATTACAGTATAATTAACATGTTAAACCATGGGA
TAAATGCCATCAATAAAAAATTATGAAATACTTTTTGTTCTAGTGTTAACTCATAGTGAA
GGTCAAGTGTTAGTAGAAGAGAACCTTTTTATAAAGGTTAACAGTGGTCAGAAGAGAGAT
TCCAAAGAACACGTTGACGTGATTTGGAGGGAAAGTGTCTCAAGGTACCTTGCTTTTTGT
CTGGTGCTAGGAACCACACCTACTTTGCGCACAAATTGACAAACCTTTTTAAAAGTTGAA
AATAAACACAAG
|
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14-132, - strand, RNAz p=0.979937 |
|
159-295, - strand, RNAz p=0.953573 |
|
616-730, - strand, RNAz p=0.816466 |
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1145-1264, - strand, RNAz p=0.549444 |
|
1345-1496, - strand, RNAz p=0.977092 |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
14-132, - strand, RNAz p=0.979937 |
|
159-295, - strand, RNAz p=0.953573 |
|
616-730, - strand, RNAz p=0.816466 |
|
1145-1264, - strand, RNAz p=0.549444 |
|
1345-1496, - strand, RNAz p=0.977092 |
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14-295, gnl|bosTau2|chr23 (30208731-30209012) |
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14-295, gnl|canFam2|chr35 (19544294-19544595) |
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14-295, gnl|dasNov1|scaffold_60000 (37542-37846) |
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14-295, gnl|fr1|chrUn (264165085-264164818) |
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14-295, gnl|galGal2|chr2 (61791898-61792196) |
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14-295, gnl|hg17|chr6 (17732762-17733063) |
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14-295, gnl|Hg17|chr6 (17733050-17732769) |
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14-295, gnl|loxAfr1|scaffold_5813 (34221-34525) |
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14-295, gnl|mm7|chr13 (46165087-46165386) |
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14-295, gnl|Mm7|chr13 (46165375-46165094) |
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14-295, gnl|monDom2|scaffold_3 (106755637-106755937) |
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14-295, gnl|oryCun1|scaffold_202908 (6376-6674) |
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14-295, gnl|panTro1|chr5 (18104914-18105215) |
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14-295, gnl|rheMac2|chr4 (17687057-17687358) |
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14-295, gnl|rn3|chr17 (24083792-24083493) |
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14-295, gnl|xenTro1|scaffold_64 (683938-684219) |
| |
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462-1806, gnl|bosTau2|chr23 (30215964-30217321) |
|
462-1806, gnl|Hg17|chr6 (17724392-17722995) |
|
462-1806, gnl|Mm7|chr13 (46163342-46162004) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
14-295, gnl|bosTau2|chr23 (30208731-30209012) |
|
14-295, gnl|canFam2|chr35 (19544294-19544595) |
|
14-295, gnl|dasNov1|scaffold_60000 (37542-37846) |
|
14-295, gnl|fr1|chrUn (264165085-264164818) |
|
14-295, gnl|galGal2|chr2 (61791898-61792196) |
|
14-295, gnl|hg17|chr6 (17732762-17733063) |
|
14-295, gnl|Hg17|chr6 (17733050-17732769) |
|
14-295, gnl|loxAfr1|scaffold_5813 (34221-34525) |
|
14-295, gnl|mm7|chr13 (46165087-46165386) |
|
14-295, gnl|Mm7|chr13 (46165375-46165094) |
|
14-295, gnl|monDom2|scaffold_3 (106755637-106755937) |
|
14-295, gnl|oryCun1|scaffold_202908 (6376-6674) |
|
14-295, gnl|panTro1|chr5 (18104914-18105215) |
|
14-295, gnl|rheMac2|chr4 (17687057-17687358) |
|
14-295, gnl|rn3|chr17 (24083792-24083493) |
|
14-295, gnl|xenTro1|scaffold_64 (683938-684219) |
| |
|
462-1806, gnl|bosTau2|chr23 (30215964-30217321) |
|
462-1806, gnl|Hg17|chr6 (17724392-17722995) |
|
462-1806, gnl|Mm7|chr13 (46163342-46162004) |
|
isp (0.300752) |
|
sug (0.254582) |
|
clu (0.239292) |
|
cbe (0.239234) |
|
mgp (0.230681) |
|
tes (0.207814) |
|
sag (0.182715) |
|
fco (0.157208) |
|
tbr (0.154178) |
|
bfe (0.149858) |
|
ski (0.146735) |
|
lin (0.145603) |
|
spl (0.143184) |
|
csk (0.140746) |
|
che (0.136314) |
|
nmm (0.132802) |
|
kid (0.129735) |
|
ova (0.129132) |
|
bla (0.124347) |
|
med (0.116252) |
|
nbm (0.0993246) |
|
isp (0.300752) |
|
sug (0.254582) |
|
clu (0.239292) |
|
cbe (0.239234) |
|
mgp (0.230681) |
|
tes (0.207814) |
|
sag (0.182715) |
|
fco (0.157208) |
|
tbr (0.154178) |
|
bfe (0.149858) |
|
ski (0.146735) |
|
lin (0.145603) |
|
spl (0.143184) |
|
csk (0.140746) |
|
che (0.136314) |
|
nmm (0.132802) |
|
kid (0.129735) |
|
ova (0.129132) |
|
bla (0.124347) |
|
med (0.116252) |
|
nbm (0.0993246) |
