Ss1.1-Pig4-TMW8029A23.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTGGGAGCTCTGTGTTTCATGCAATGTTTTACGGAGAACTTGCTGAAGACAAAGATGAA ATCCGTATACCAGATGTCGACCCTGCTGCTTTTCTTGCTATGCTGAAATACATCTATTGT GATGAAATTGACTTGGCTGCTGACACAGTGTTGGCCACTCTTTATGCTGCCAAAAAAATA CATCGTCCCTCACCTCGCCAGGGCCTGCGTCAATTTCCTGGAGACCAGCCTGAGCGCCAA GAACGCCTGTGTCCTCCTCTCCCAGAGCTGCCTGTTTGAGGAGCCGGACCTGACCCAGCG TTGCTGGGAGGTGATCGACGCCCAGGCCGAGCTAGCTCTCAAGTCTGAGGGCTTCTGCGA TATTGACTTCCAGACGCTCGAAAGCATCCTCCGCAGGGAAACTCTGAATGCCAAAGAGAT TGTGGTTTTTGAGGCAGCTCTCAACTGGGCTGAAGTGGAATGCCAGCGACAAGATCTGGC TCTGAGCATCGAAAACAAACGCAAGGTCCTGGGGAAGGCGCTTTACCTGATCCGCATACC CACCATGGCCCTGGACGATTTTGCAAACGGTGCCGCACAGTCTGGAGTCTTAACTCTCAA CGAGACCAACGACATCTTCCTCTGGTACACTGCGGCCAAGAAACCCGAGCTGCAGTTCGT CAGCAAAGCCCGCAAGGGCCTGGTCCCCCAGCGCTGCCACCGCTTCCAGTCGTGTGCCTA TCGGAGCAACCAGTGGCGCTACCGGGGCCGCTGCGACAGCATCCAGTTTGCCGTAGATAA GAGGGTGTTTATCGCTGGCTTCGGGCTCTACGGCTCCAGCTGCGGCTCTGCCGAGTACAG CGCCAAGATCGAACTCAAGCGGCAGGGCGTCGTCCTGGGCCAGAACCTGAGCAAGTACTT CTCAGACGGCTCCAGCAATACCTTCCCTGTGTGGTTTGAGTACCCGGTGCAGATCGAGCC AGACACATTCTACACGGCCAGTGTGATACTGGACGGCAATGAGCTCAGCTACTTTGGGCA GGAAGGCATGACGGAAGTTCAGTGTGGCAAAGTCACCGTCCAGTTTCAGTGCTCCTCGGA CAGCACCAACGGCACGGGGGTACAGGGGGGCCAGATCCCTGAACTTATATTCTATGCGTG AGAGCACTTCCCCAGGCGTCGGTGTGGGCTCCTGGGTGCACATCACATCCACATCCTCCC CGCTTGCTTGATGCTTAGCTCAGCTGTGCAGGTGATTCGCAAGGAATGAGCTGTAGGCAG TTTCTAATTTCTTTCAACCTTTCAATTATGTACAGGCAAAATGCAGCAATCCGCTTTTAA CTGTATGCCTAACAGAGCCAAGTTCTTACCAAGGCTTGTGGGTCTTAGAGTTGCATCTGC ACATCTGGGGAGATGGTGCGTTCTTTTCCAACTGCTCCACTGACCTCTCAGTTTTGTCCC TCTTAAGATTTTTGGATCACCTCAAATTTCCTTTTGGGCTTTATTTTGACAAATAGAAAT AAATAGTCTAAAGTAACAATAACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTGGGAGCTCTGTGTTTCATGCAATGTTTTACGGAGAACTTGCTGAAGACAAAGATGAA ATCCGTATACCAGATGTCGACCCTGCTGCTTTTCTTGCTATGCTGAAATACATCTATTGT GATGAAATTGACTTGGCTGCTGACACAGTGTTGGCCACTCTTTATGCTGCCAAAAAAATA CATCGTCCCTCACCTCGCCAGGGCCTGCGTCAATTTCCTGGAGACCAGCCTGAGCGCCAA GAACGCCTGTGTCCTCCTCTCCCAGAGCTGCCTGTTTGAGGAGCCGGACCTGACCCAGCG TTGCTGGGAGGTGATCGACGCCCAGGCCGAGCTAGCTCTCAAGTCTGAGGGCTTCTGCGA TATTGACTTCCAGACGCTCGAAAGCATCCTCCGCAGGGAAACTCTGAATGCCAAAGAGAT TGTGGTTTTTGAGGCAGCTCTCAACTGGGCTGAAGTGGAATGCCAGCGACAAGATCTGGC TCTGAGCATCGAAAACAAACGCAAGGTCCTGGGGAAGGCGCTTTACCTGATCCGCATACC CACCATGGCCCTGGACGATTTTGCAAACGGTGCCGCACAGTCTGGAGTCTTAACTCTCAA CGAGACCAACGACATCTTCCTCTGGTACACTGCGGCCAAGAAACCCGAGCTGCAGTTCGT CAGCAAAGCCCGCAAGGGCCTGGTCCCCCAGCGCTGCCACCGCTTCCAGTCGTGTGCCTA TCGGAGCAACCAGTGGCGCTACCGGGGCCGCTGCGACAGCATCCAGTTTGCCGTAGATAA GAGGGTGTTTATCGCTGGCTTCGGGCTCTACGGCTCCAGCTGCGGCTCTGCCGAGTACAG CGCCAAGATCGAACTCAAGCGGCAGGGCGTCGTCCTGGGCCAGAACCTGAGCAAGTACTT CTCAGACGGCTCCAGCAATACCTTCCCTGTGTGGTTTGAGTACCCGGTGCAGATCGAGCC AGACACATTCTACACGGCCAGTGTGATACTGGACGGCAATGAGCTCAGCTACTTTGGGCA GGAAGGCATGACGGAAGTTCAGTGTGGCAAAGTCACCGTCCAGTTTCAGTGCTCCTCGGA CAGCACCAACGGCACGGGGGTACAGGGGGGCCAGATCCCTGAACTTATATTCTATGCGTG AGAGCACTTCCCCAGGCGTCGGTGTGGGCTCCTGGGTGCACATCACATCCACATCCTCCC CGCTTGCTTGATGCTTAGCTCAGCTGTGCAGGTGATTCGCAAGGAATGAGCTGTAGGCAG TTTCTAATTTCTTTCAACCTTTCAATTATGTACAGGCAAAATGCAGCAATCCGCTTTTAA CTGTATGCCTAACAGAGCCAAGTTCTTACCAAGGCTTGTGGGTCTTAGAGTTGCATCTGC ACATCTGGGGAGATGGTGCGTTCTTTTCCAACTGCTCCACTGACCTCTCAGTTTTGTCCC TCTTAAGATTTTTGGATCACCTCAAATTTCCTTTTGGGCTTTATTTTGACAAATAGAAAT AAATAGTCTAAAGTAACAATAACA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 227-346, - strand, RNAz p=0.967529 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 227-346, - strand, RNAz p=0.967529 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 108-1145, gnl|bosTau2|chr13 (897985-896949) | |
| 108-1145, gnl|canFam2|chr24 (13481740-13480691) | |
| 108-1145, gnl|danRer3|chr20 (7521172-7520102) | |
| 108-1145, gnl|dasNov1|scaffold_2737 (58848-59900) | |
| 108-1145, gnl|echTel1|scaffold_315796 (42203-41152) | |
| 108-1145, gnl|fr1|chrUn (15016673-15015613) | |
| 108-1145, gnl|galGal2|chr14 (19148307-19149371) | |
| 108-1145, gnl|hg17|chr20 (11851271-11852321) | |
| 108-1145, gnl|Hg17|chr20 (11851282-11852318) | |
| 108-1145, gnl|loxAfr1|scaffold_10389 (72136-71085) | |
| 108-1145, gnl|mm7|chr2 (138024299-138025350) | |
| 108-1145, gnl|Mm7|chr2 (138024311-138025347) | |
| 108-1145, gnl|monDom2|scaffold_1 (44813401-44814452) | |
| 108-1145, gnl|oryCun1|scaffold_177502 (9058-8002) | |
| 108-1145, gnl|panTro1|chr21 (11708913-11709963) | |
| 108-1145, gnl|rheMac2|chr10 (45220610-45221660) | |
| 108-1145, gnl|rn3|chr3 (126313473-126314524) | |
| 108-1145, gnl|tetNig1|chrUn_random (87782756-87781717) | |
| 108-1145, gnl|xenTro1|scaffold_258 (939068-938018) | |
| 1236-1515, gnl|bosTau2|chr13 (896894-896622) | |
| 1236-1515, gnl|Hg17|chr20 (11852414-11852680) | |
| 1236-1515, gnl|Mm7|chr2 (138025436-138025702) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 108-1145, gnl|bosTau2|chr13 (897985-896949) | |
| 108-1145, gnl|canFam2|chr24 (13481740-13480691) | |
| 108-1145, gnl|danRer3|chr20 (7521172-7520102) | |
| 108-1145, gnl|dasNov1|scaffold_2737 (58848-59900) | |
| 108-1145, gnl|echTel1|scaffold_315796 (42203-41152) | |
| 108-1145, gnl|fr1|chrUn (15016673-15015613) | |
| 108-1145, gnl|galGal2|chr14 (19148307-19149371) | |
| 108-1145, gnl|hg17|chr20 (11851271-11852321) | |
| 108-1145, gnl|Hg17|chr20 (11851282-11852318) | |
| 108-1145, gnl|loxAfr1|scaffold_10389 (72136-71085) | |
| 108-1145, gnl|mm7|chr2 (138024299-138025350) | |
| 108-1145, gnl|Mm7|chr2 (138024311-138025347) | |
| 108-1145, gnl|monDom2|scaffold_1 (44813401-44814452) | |
| 108-1145, gnl|oryCun1|scaffold_177502 (9058-8002) | |
| 108-1145, gnl|panTro1|chr21 (11708913-11709963) | |
| 108-1145, gnl|rheMac2|chr10 (45220610-45221660) | |
| 108-1145, gnl|rn3|chr3 (126313473-126314524) | |
| 108-1145, gnl|tetNig1|chrUn_random (87782756-87781717) | |
| 108-1145, gnl|xenTro1|scaffold_258 (939068-938018) | |
| 1236-1515, gnl|bosTau2|chr13 (896894-896622) | |
| 1236-1515, gnl|Hg17|chr20 (11852414-11852680) | |
| 1236-1515, gnl|Mm7|chr2 (138025436-138025702) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) |