Non-Coding RNA Search

Ss1.1-Pig4-TMW8029B02.3

Sequence:


               
               GCATGTTCGAGTGCCAGCTCTGTGCCTTAACAGCCCCTTACAGCTACGTGGGGCAGCGGC
CCCCCTACACCCAGTCCATTGTGCTCCTGGAGGAGAGCTACGTCATGAAGGACCCCTTCA
CCTCCGACAAGGACAGGTTCCTGATCCTCGGCTCCAGATGCAGTCTGTGCGGCAGGCTGG
TGTGCGTGGGCCCGGAATGCAGTCTGTTTTACTGCAGGAGGTTCTGCCTCCCCTGTGCCC
AGGAGAACGCTGCTGCTTTCCCTCCGGAAGTTCAGCAAGATTTGGAGAAAAAGAAAAGCC
CACGCAAGAGGCCTTCCAGCCAGCACGGCTCTCGGACGTGAGCGCAGCCGGGAACCGGGT
CCGCAGTAGTGCCGGCCCTGCACCCGGCTCCTGGCTCCCGCTTGCGGGCTTCTGCGGCCT
GGGGCAGAGATGGGGCCGAGCTGGGAGCTGCCGTGCCTGGCGCTGTTTCTGGGCCACGGG
AGGCAGTGTCTGCAGCCCGAGGGACCTGAGCGACAGGGCCAGAGGACCACGCCGAGAAGG
CGCCCAGACCCCGGTGCGCCAGAGCTGCTGTCAGTGCTGAGACGGCGGGCGCCCCTTCCC
CTGCCCCCCGCCCTCAAAGGCCCCCTGTAGCAACTGGTGAGAAGCCACCCGTGGGCTCCC
CTCTGCCCGCAGGTCTTAGCGGACCCAACAGCTCTGTGCTGTTCTGCAGCTTCTGCGGGG
CCAGAGAACCCTTTCCCGGGGGTGTTAGAAATGTGTCTGATGAGAGGATGAATAAAGAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCATGTTCGAGTGCCAGCTCTGTGCCTTAACAGCCCCTTACAGCTACGTGGGGCAGCGGC
CCCCCTACACCCAGTCCATTGTGCTCCTGGAGGAGAGCTACGTCATGAAGGACCCCTTCA
CCTCCGACAAGGACAGGTTCCTGATCCTCGGCTCCAGATGCAGTCTGTGCGGCAGGCTGG
TGTGCGTGGGCCCGGAATGCAGTCTGTTTTACTGCAGGAGGTTCTGCCTCCCCTGTGCCC
AGGAGAACGCTGCTGCTTTCCCTCCGGAAGTTCAGCAAGATTTGGAGAAAAAGAAAAGCC
CACGCAAGAGGCCTTCCAGCCAGCACGGCTCTCGGACGTGAGCGCAGCCGGGAACCGGGT
CCGCAGTAGTGCCGGCCCTGCACCCGGCTCCTGGCTCCCGCTTGCGGGCTTCTGCGGCCT
GGGGCAGAGATGGGGCCGAGCTGGGAGCTGCCGTGCCTGGCGCTGTTTCTGGGCCACGGG
AGGCAGTGTCTGCAGCCCGAGGGACCTGAGCGACAGGGCCAGAGGACCACGCCGAGAAGG
CGCCCAGACCCCGGTGCGCCAGAGCTGCTGTCAGTGCTGAGACGGCGGGCGCCCCTTCCC
CTGCCCCCCGCCCTCAAAGGCCCCCTGTAGCAACTGGTGAGAAGCCACCCGTGGGCTCCC
CTCTGCCCGCAGGTCTTAGCGGACCCAACAGCTCTGTGCTGTTCTGCAGCTTCTGCGGGG
CCAGAGAACCCTTTCCCGGGGGTGTTAGAAATGTGTCTGATGAGAGGATGAATAAAGAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|49533621|ref|NP_997210.3|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|49533621|ref|NP_997210.3|

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               194-780, gnl|bosTau2|chr5 (73978373-73978940)
               

               
               194-780, gnl|Hg17|chr22 (44961655-44960446)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               194-780, gnl|bosTau2|chr5 (73978373-73978940)
               

               
               194-780, gnl|Hg17|chr22 (44961655-44960446)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fbs (0.175346)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)

	194-780, gnl\|bosTau2\|chr5 (73978373-73978940)
	194-780, gnl\|Hg17\|chr22 (44961655-44960446)