Non-Coding RNA Search

Ss1.1-Pig4-TMW8029B05.3

Sequence:


               
               GGTGAGCTCTTTTGTGCATTTGTAAGCACATGCAAGTGATTTGGAAGAAAGCGCACTATT
ATTCTGTGTTTTCAATCCTTAATATACCCAAGCTTGTTTGGATTTATTACGTCTTAACCA
TTTTGTTTCTTCTTTGAGTCTTATAAGCATTCACTTAAGTTCCTGATATTAAGGATTCTG
AGAAACCATAACTTGCCATTTTCTAGAAGTGAGAAAACTCATCTACTTTATTTATGCTTT
AGTTAAATACAGTTGAACTTTTCTCCATTGTTAACTGATAGCAGAGAGGCAGCTCACCTT
GTTTCCAAGGAAAGTCACGAGGCCAAGACAAAGGTATATTGTTTTTTGTTTTGTTGTTGT
CCGTCTCAAACCTTTGTGTTTTTTAGGAGACTAATGTCTGAAATAGAATTTTAGTTTCTC
TTTCCTTAAATTGGGGAAGTATGAACATTGTTTTCAGGCTATTCTTAGGTATACAAGTTG
TAAGCCCTCTTTAAGGTAACTGTTATACCCAAGAAAAGTCTTCAATTATAGCAATTAAAA
ATGTATTTACCACTTTGCTTCAGAGAGGATATAGGTTGGCTTTCAAATTGCACTTGGTAT
AAATGGAGTTTCTAAGACTGGTCTTGCATTCATTACCTAGTACTTGCATTGTACTGAATT
ACATAGAATAATACAACAAATAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGAGCTCTTTTGTGCATTTGTAAGCACATGCAAGTGATTTGGAAGAAAGCGCACTATT
ATTCTGTGTTTTCAATCCTTAATATACCCAAGCTTGTTTGGATTTATTACGTCTTAACCA
TTTTGTTTCTTCTTTGAGTCTTATAAGCATTCACTTAAGTTCCTGATATTAAGGATTCTG
AGAAACCATAACTTGCCATTTTCTAGAAGTGAGAAAACTCATCTACTTTATTTATGCTTT
AGTTAAATACAGTTGAACTTTTCTCCATTGTTAACTGATAGCAGAGAGGCAGCTCACCTT
GTTTCCAAGGAAAGTCACGAGGCCAAGACAAAGGTATATTGTTTTTTGTTTTGTTGTTGT
CCGTCTCAAACCTTTGTGTTTTTTAGGAGACTAATGTCTGAAATAGAATTTTAGTTTCTC
TTTCCTTAAATTGGGGAAGTATGAACATTGTTTTCAGGCTATTCTTAGGTATACAAGTTG
TAAGCCCTCTTTAAGGTAACTGTTATACCCAAGAAAAGTCTTCAATTATAGCAATTAAAA
ATGTATTTACCACTTTGCTTCAGAGAGGATATAGGTTGGCTTTCAAATTGCACTTGGTAT
AAATGGAGTTTCTAAGACTGGTCTTGCATTCATTACCTAGTACTTGCATTGTACTGAATT
ACATAGAATAATACAACAAATAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               7-125, - strand, RNAz p=0.711071
               

               
               271-379, + strand, RNAz p=0.898188

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               7-125, - strand, RNAz p=0.711071
               

               
               271-379, + strand, RNAz p=0.898188

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               7-559, gnl|bosTau2|chr2 (16857194-16857764)
               

               
               7-559, gnl|Hg17|chr2 (172006055-172004284)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-559, gnl|bosTau2|chr2 (16857194-16857764)
               

               
               7-559, gnl|Hg17|chr2 (172006055-172004284)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fat (0.294855)
               

               
               liv (0.146284)
               

               
               tra (0.123092)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.294855)
               

               
               liv (0.146284)
               

               
               tra (0.123092)
               

               
               cty (0.10408)

	7-125, - strand, RNAz p=0.711071
	271-379, + strand, RNAz p=0.898188

	7-559, gnl\|bosTau2\|chr2 (16857194-16857764)
	7-559, gnl\|Hg17\|chr2 (172006055-172004284)