Non-Coding RNA Search

Ss1.1-Pig4-TMW8029B06.3

Sequence:


               
               CATGGTCACCTCATGAAGATGTATGGCAGGTGGCTCTCAGGAAAAATACTAAGTCTGGAT
CATCCATGTGGCAGCTTTGCATAGGGAGATGACAGCTCCGAACTGGAACTTTACTGCCTT
CCACGCGCTTGACCAAAGCAGTGATGAGGGTGGCCAATACATGTGGTATGAGTGGTAGGT
TTAAAGAGAAAGGGGTGTTTTCTGCTGGCGTTTCCTTTGTCCTTGGGCTGCTCAAGCTGA
ACAGTAGGTAACCACTGTTTTCAAGGAACCAGCCTACCTTGGCTGGTTTGGTTCGGAGTC
CGTTTCATCCCTAGCTGTGAGTGCCTTTTGGTCTGGAACGTTGGCTTGTCTCATGATACC
CACAGCTAGGACATTCTCTCTGTAATTTCAAATTGTCTTTGTTTTACATTAACTAAAAGA
GAATGTCTGATCACTAGAGTTTGTTGGTGTTGGTTTCCACTGTGAGGTTCTTAAACTTTT
TCGCTTCATAATACTAAAGCAACACATGTTAGATACCCTTTCAACAAGAAAGGTTTGTAG
TTGAGACATTACATATATTTTATTGTTTATAAGAAAAATCATCTATACAGGAGTCCTGGG
TGTTAATTTTAATATTTGCACAAGATCTGTTTTCCATGATGTGTTAACACCTACAATTTC
ACTAACTGTTGATGTTATTTTCTATTGAGATTCTGGAGCCTAGGGAGCTATATGTTCTTT
TTGTTTGTTTTCATTCTTATTTCCCTGAAGCAAGAGACTTTGTATGGCCTTCAGTGCAAA
GACTTCAGACCAATTCTTTGTATTACACTTGGTTGCCTCTTGGCTATATAACTTCTGAGT
GCAAATCATTGAACTCTTTAACAAAAGTATTGTAGAGAATAAATCATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGGTCACCTCATGAAGATGTATGGCAGGTGGCTCTCAGGAAAAATACTAAGTCTGGAT
CATCCATGTGGCAGCTTTGCATAGGGAGATGACAGCTCCGAACTGGAACTTTACTGCCTT
CCACGCGCTTGACCAAAGCAGTGATGAGGGTGGCCAATACATGTGGTATGAGTGGTAGGT
TTAAAGAGAAAGGGGTGTTTTCTGCTGGCGTTTCCTTTGTCCTTGGGCTGCTCAAGCTGA
ACAGTAGGTAACCACTGTTTTCAAGGAACCAGCCTACCTTGGCTGGTTTGGTTCGGAGTC
CGTTTCATCCCTAGCTGTGAGTGCCTTTTGGTCTGGAACGTTGGCTTGTCTCATGATACC
CACAGCTAGGACATTCTCTCTGTAATTTCAAATTGTCTTTGTTTTACATTAACTAAAAGA
GAATGTCTGATCACTAGAGTTTGTTGGTGTTGGTTTCCACTGTGAGGTTCTTAAACTTTT
TCGCTTCATAATACTAAAGCAACACATGTTAGATACCCTTTCAACAAGAAAGGTTTGTAG
TTGAGACATTACATATATTTTATTGTTTATAAGAAAAATCATCTATACAGGAGTCCTGGG
TGTTAATTTTAATATTTGCACAAGATCTGTTTTCCATGATGTGTTAACACCTACAATTTC
ACTAACTGTTGATGTTATTTTCTATTGAGATTCTGGAGCCTAGGGAGCTATATGTTCTTT
TTGTTTGTTTTCATTCTTATTTCCCTGAAGCAAGAGACTTTGTATGGCCTTCAGTGCAAA
GACTTCAGACCAATTCTTTGTATTACACTTGGTTGCCTCTTGGCTATATAACTTCTGAGT
GCAAATCATTGAACTCTTTAACAAAAGTATTGTAGAGAATAAATCATA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               602-713, - strand, RNAz p=0.647687

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               602-713, - strand, RNAz p=0.647687

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               602-888, gnl|bosTau2|chr6 (7224972-7225261)
               

               
               602-888, gnl|Hg17|chr2 (128335701-128335445)
               

               
               602-888, gnl|Mm7|chr18 (32175902-32176145)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               602-888, gnl|bosTau2|chr6 (7224972-7225261)
               

               
               602-888, gnl|Hg17|chr2 (128335701-128335445)
               

               
               602-888, gnl|Mm7|chr18 (32175902-32176145)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               sin (0.174948)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               jca (0.11396)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               sin (0.174948)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               jca (0.11396)

	602-888, gnl\|bosTau2\|chr6 (7224972-7225261)
	602-888, gnl\|Hg17\|chr2 (128335701-128335445)
	602-888, gnl\|Mm7\|chr18 (32175902-32176145)

	tes (0.207814)
	fcc (0.197785)
	sin (0.174948)
	fco (0.157208)
	lun (0.150489)
	ova (0.129132)
	sug (0.127291)
	bla (0.124347)
	jca (0.11396)