Non-Coding RNA Search

Ss1.1-Pig4-TMW8029B11.3

Sequence:


               
               GCGCCGCGGGGTTCTTCCCCGGGCTGTTTGGCGCGTCGGCAGGCAGTACATCATGGCGGC
GGCGGTGCGCGCCGCGGGGTTCTTCCCCGGGCTGTTTGGCGCGTCGGCAGGTAATTTATG
GTCCAGGCAGCTTTACTTAAACACCTTTCCAGCGGCTTCCATTTTGACATCGAAGACTTT
TCCCAGCAATGGCCCTTTGTCACCTCCAGGAACCAGAGACAACCATCATTTTACCAGCTT
GGCTTGTGCACTTCAGACACAATGCAGTATTTCTTCTCCCAGTAACTGGATGGGCCAACA
GTACAGATCCTATAGTTTCTTCACTAAATTGACAGCAGATGAGCTATGGAAAGGTGCTTT
AGCAGAGAGTGGTGCTGGAGCAAGAAAAGGAAGAGGCAAAAGAACTAAGAAAAAGAGAAG
AAAGGATTTGAACAGGGGTCAGATCATTGGTGAAGGACGTCATGGCTTCCTCTGGCCTGG
TCTGAATATCCCTCTTATGAGAAATGGTGCTGTACAGACCATTGCCCAGAGGAGCAAGGA
AGACCAGGAAAAGGTGGAGGCCGATATGGTCCAGCAGAGAGAAGAGTGGGACCGGAGGAG
GAAGATGAAGGTTAAACGGGAGCGAGGATGGAGTGGAAACACATGGGGAGGCGTCAGTCT
TGGTCCCCCGGATCCTGGTCCCAATGGAGAAACATATGATGATTTTGATACCAGGATACT
TGAGGTGAGAAATGTTTTCAATATGACAGCAAAAGAGGGAAGAAAGAGATCAGTCCGTGT
CCTGGTCGCTGTGGGGAATGGCAAAGGAGCTGCAGGTTTTGCCATTGGGAAAGCCACTGA
ACGGGCAGATGCTTTCAGAAAAGCAAAGAACAGAGCAGTTCACTATCTGCATTACATAGA
GCGATATGAAGACCATACAATATACCATGATATTTCTTTAAAATTTAAAAGGACGCATAT
CAAGATGAAGAAACAACCCAGAGGCTACGGTCTCCACTGCCACCGGGCCATCATGACCAT
CTGCCGGCTCATTGGCATCAAAGACTTGTACGCCAAGGTGTCTGGCTCTGTCAACATGCT
CAACCTCACCCGGGGCCTCTTCCTTGGGCTCTCCCGCCAGGAAACCCATCAACAACTGGC
TGATAAGAAGAGTCTCCATGTTGTGGAATTCCGGGAGGAATGTGGCCCTCTGCCCATCGT
GGTTGCCTCCCCCCAGGGAGCCTTGAGAAAGGATCCAGAGCCAGAAGATGAGGTTCCAGA
CATCACACTGGACTGGGAAGATGTGAAGGCCGCTCAGGGAATGAAGCGCTCTGTGTGGTC
AGGTTTAAAGAGAGCCGCCACCTAGGCTTCACTCTGGCCTGGCTCAGCCCAGCACCTGGG
AGAGACTCAGCCCTTCATACCCAGGATTCTCAATTTTTTTTTTTTTAAACTGGAAAGGCC
AATGTTAAACTTCTTTATTTACAAATAATAAATAATTATAGATTTAATTGATTGAGCATG
TCATATATACCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCCGCGGGGTTCTTCCCCGGGCTGTTTGGCGCGTCGGCAGGCAGTACATCATGGCGGC
GGCGGTGCGCGCCGCGGGGTTCTTCCCCGGGCTGTTTGGCGCGTCGGCAGGTAATTTATG
GTCCAGGCAGCTTTACTTAAACACCTTTCCAGCGGCTTCCATTTTGACATCGAAGACTTT
TCCCAGCAATGGCCCTTTGTCACCTCCAGGAACCAGAGACAACCATCATTTTACCAGCTT
GGCTTGTGCACTTCAGACACAATGCAGTATTTCTTCTCCCAGTAACTGGATGGGCCAACA
GTACAGATCCTATAGTTTCTTCACTAAATTGACAGCAGATGAGCTATGGAAAGGTGCTTT
AGCAGAGAGTGGTGCTGGAGCAAGAAAAGGAAGAGGCAAAAGAACTAAGAAAAAGAGAAG
AAAGGATTTGAACAGGGGTCAGATCATTGGTGAAGGACGTCATGGCTTCCTCTGGCCTGG
TCTGAATATCCCTCTTATGAGAAATGGTGCTGTACAGACCATTGCCCAGAGGAGCAAGGA
AGACCAGGAAAAGGTGGAGGCCGATATGGTCCAGCAGAGAGAAGAGTGGGACCGGAGGAG
GAAGATGAAGGTTAAACGGGAGCGAGGATGGAGTGGAAACACATGGGGAGGCGTCAGTCT
TGGTCCCCCGGATCCTGGTCCCAATGGAGAAACATATGATGATTTTGATACCAGGATACT
TGAGGTGAGAAATGTTTTCAATATGACAGCAAAAGAGGGAAGAAAGAGATCAGTCCGTGT
CCTGGTCGCTGTGGGGAATGGCAAAGGAGCTGCAGGTTTTGCCATTGGGAAAGCCACTGA
ACGGGCAGATGCTTTCAGAAAAGCAAAGAACAGAGCAGTTCACTATCTGCATTACATAGA
GCGATATGAAGACCATACAATATACCATGATATTTCTTTAAAATTTAAAAGGACGCATAT
CAAGATGAAGAAACAACCCAGAGGCTACGGTCTCCACTGCCACCGGGCCATCATGACCAT
CTGCCGGCTCATTGGCATCAAAGACTTGTACGCCAAGGTGTCTGGCTCTGTCAACATGCT
CAACCTCACCCGGGGCCTCTTCCTTGGGCTCTCCCGCCAGGAAACCCATCAACAACTGGC
TGATAAGAAGAGTCTCCATGTTGTGGAATTCCGGGAGGAATGTGGCCCTCTGCCCATCGT
GGTTGCCTCCCCCCAGGGAGCCTTGAGAAAGGATCCAGAGCCAGAAGATGAGGTTCCAGA
CATCACACTGGACTGGGAAGATGTGAAGGCCGCTCAGGGAATGAAGCGCTCTGTGTGGTC
AGGTTTAAAGAGAGCCGCCACCTAGGCTTCACTCTGGCCTGGCTCAGCCCAGCACCTGGG
AGAGACTCAGCCCTTCATACCCAGGATTCTCAATTTTTTTTTTTTTAAACTGGAAAGGCC
AATGTTAAACTTCTTTATTTACAAATAATAAATAATTATAGATTTAATTGATTGAGCATG
TCATATATACCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61824096|ref|XP_589989.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61824096|ref|XP_589989.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               454-1240, + strand, RNAz p=0.780658

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               454-1240, + strand, RNAz p=0.780658

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               191-328, gnl|bosTau2|chr11 (1885790-1885927)
               

               
               191-328, gnl|Hg17|chr2 (95202823-95202686)
               

               
               191-328, gnl|Mm7|chr2 (127332666-127332803)
               


               
               454-689, gnl|bosTau2|chr11 (1890355-1890590)
               

               
               454-689, gnl|Hg17|chr2 (95196029-95195794)
               

               
               454-689, gnl|Mm7|chr2 (127336515-127336750)
               


               
               1083-1512, gnl|bosTau2|chr11 (1902618-1903055)
               

               
               1083-1512, gnl|Hg17|chr2 (95175232-95174801)
               

               
               1083-1512, gnl|Mm7|chr2 (127344450-127344856)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               191-328, gnl|bosTau2|chr11 (1885790-1885927)
               

               
               191-328, gnl|Hg17|chr2 (95202823-95202686)
               

               
               191-328, gnl|Mm7|chr2 (127332666-127332803)
               


               
               454-689, gnl|bosTau2|chr11 (1890355-1890590)
               

               
               454-689, gnl|Hg17|chr2 (95196029-95195794)
               

               
               454-689, gnl|Mm7|chr2 (127336515-127336750)
               


               
               1083-1512, gnl|bosTau2|chr11 (1902618-1903055)
               

               
               1083-1512, gnl|Hg17|chr2 (95175232-95174801)
               

               
               1083-1512, gnl|Mm7|chr2 (127344450-127344856)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               fli (0.405762)
               

               
               ton (0.351)
               

               
               csp (0.322373)
               

               
               lnt (0.284616)
               

               
               med (0.232504)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               nco (0.161734)
               

               
               cst (0.140036)
               

               
               ute (0.132784)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (0.405762)
               

               
               ton (0.351)
               

               
               csp (0.322373)
               

               
               lnt (0.284616)
               

               
               med (0.232504)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               nco (0.161734)
               

               
               cst (0.140036)
               

               
               ute (0.132784)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	191-328, gnl\|bosTau2\|chr11 (1885790-1885927)
	191-328, gnl\|Hg17\|chr2 (95202823-95202686)
	191-328, gnl\|Mm7\|chr2 (127332666-127332803)

	454-689, gnl\|bosTau2\|chr11 (1890355-1890590)
	454-689, gnl\|Hg17\|chr2 (95196029-95195794)
	454-689, gnl\|Mm7\|chr2 (127336515-127336750)

	1083-1512, gnl\|bosTau2\|chr11 (1902618-1903055)
	1083-1512, gnl\|Hg17\|chr2 (95175232-95174801)
	1083-1512, gnl\|Mm7\|chr2 (127344450-127344856)

	fli (0.405762)
	ton (0.351)
	csp (0.322373)
	lnt (0.284616)
	med (0.232504)
	fty (0.17584)
	ill (0.175593)
	nco (0.161734)
	cst (0.140036)
	ute (0.132784)
	thg (0.126791)
	ese (0.126502)
	bla (0.124347)
	eep (0.122564)
	ebs (0.118301)
	ecc (0.115035)
	cty (0.10408)