Ss1.1-Pig4-TMW8029B14.3
|
GGAAGGAATTGTCGGAGGGAGCCGAGCGCTTCGGCGGCAGGGGGCTTGGGAGGGACGGCC
GAACGGGGGCGGGGGAGGGCTTTTCCGAGGCATTCCTGAGAACCCGTAGGTCGTGTTTTC
TTTACAGTTTCTTGTCATTTCTACTCTGGGCCGTCTAAACTTTGCCCAGGCGACACGAGT
ACGTGAGAGGCTCGTTCCCCAGATGGGCAGGAGAGCTAAGGAAAGACTGACCTTGCGCAA
AAACCACGAGGCCCGGGCCTGAACGTAGCTCTGCGCAGTTAAACTAAAACCACTTGCAAC
TTCATCCTGGCTCTTATATCCATCAGCATAGCTTCGTTCCCTACACAGATGCCACCTAGA
GAGTGCCTCCATTCCCTCTGCTTTGGGAGCGCATTTTGGTCTTTATTCATTTCATCGTTA
TCTCTATAAGTGTTTTCTTCTTCCTGTTTGCTCTAACTAGGGGCTCCTTTTCTATCCAGA
GTTGTTTCCGCCCACCCTAACAGCAAAACCTCTGGATCCTGCTACGTATGTTTTCTGCTT
CCAGAATCCTAACAAATTCGGAGTTTTCTACTGACCAGCAAAAACCAGGATGTTGCTACC
AGGTAATTTATTTTTAAGTTCATTTTTGTCAACCTATAAAGGACAGATTTGCTAAAAAGG
TAAGCCCTTTCTCTAATAAAACTATTATAATTGTTAGGAAAGCTATGGGTAACAATCTTA
TGAGAAAAGATAAATAAAACCAAATCGAAAAATCCAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGAAGGAATTGTCGGAGGGAGCCGAGCGCTTCGGCGGCAGGGGGCTTGGGAGGGACGGCC
GAACGGGGGCGGGGGAGGGCTTTTCCGAGGCATTCCTGAGAACCCGTAGGTCGTGTTTTC
TTTACAGTTTCTTGTCATTTCTACTCTGGGCCGTCTAAACTTTGCCCAGGCGACACGAGT
ACGTGAGAGGCTCGTTCCCCAGATGGGCAGGAGAGCTAAGGAAAGACTGACCTTGCGCAA
AAACCACGAGGCCCGGGCCTGAACGTAGCTCTGCGCAGTTAAACTAAAACCACTTGCAAC
TTCATCCTGGCTCTTATATCCATCAGCATAGCTTCGTTCCCTACACAGATGCCACCTAGA
GAGTGCCTCCATTCCCTCTGCTTTGGGAGCGCATTTTGGTCTTTATTCATTTCATCGTTA
TCTCTATAAGTGTTTTCTTCTTCCTGTTTGCTCTAACTAGGGGCTCCTTTTCTATCCAGA
GTTGTTTCCGCCCACCCTAACAGCAAAACCTCTGGATCCTGCTACGTATGTTTTCTGCTT
CCAGAATCCTAACAAATTCGGAGTTTTCTACTGACCAGCAAAAACCAGGATGTTGCTACC
AGGTAATTTATTTTTAAGTTCATTTTTGTCAACCTATAAAGGACAGATTTGCTAAAAAGG
TAAGCCCTTTCTCTAATAAAACTATTATAATTGTTAGGAAAGCTATGGGTAACAATCTTA
TGAGAAAAGATAAATAAAACCAAATCGAAAAATCCAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
276-364, - strand, RNAmicro p=0.90992 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
276-364, - strand, RNAmicro p=0.90992 |
|
19-754, gnl|bosTau2|chr6 (7683508-7682784) |
|
19-754, gnl|canFam2|chr32 (33633004-33633562) |
|
19-754, gnl|dasNov1|scaffold_2197 (25636-26151) |
|
19-754, gnl|echTel1|scaffold_319659 (150005-149443) |
|
19-754, gnl|hg17|chr4 (111898478-111898995) |
|
19-754, gnl|Hg17|chr4 (111898548-111899305) |
|
19-754, gnl|loxAfr1|scaffold_5619 (286-812) |
|
19-754, gnl|mm7|chr3 (129057008-129056498) |
|
19-754, gnl|Mm7|chr3 (129056945-129056192) |
|
19-754, gnl|monDom2|scaffold_9 (83882777-83882223) |
|
19-754, gnl|oryCun1|scaffold_196737 (5335-4756) |
|
19-754, gnl|panTro1|chr3 (128457700-128458223) |
|
19-754, gnl|rheMac2|chr5 (103534890-103535415) |
|
19-754, gnl|rn3|chr2 (226585708-226585198) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
19-754, gnl|bosTau2|chr6 (7683508-7682784) |
|
19-754, gnl|canFam2|chr32 (33633004-33633562) |
|
19-754, gnl|dasNov1|scaffold_2197 (25636-26151) |
|
19-754, gnl|echTel1|scaffold_319659 (150005-149443) |
|
19-754, gnl|hg17|chr4 (111898478-111898995) |
|
19-754, gnl|Hg17|chr4 (111898548-111899305) |
|
19-754, gnl|loxAfr1|scaffold_5619 (286-812) |
|
19-754, gnl|mm7|chr3 (129057008-129056498) |
|
19-754, gnl|Mm7|chr3 (129056945-129056192) |
|
19-754, gnl|monDom2|scaffold_9 (83882777-83882223) |
|
19-754, gnl|oryCun1|scaffold_196737 (5335-4756) |
|
19-754, gnl|panTro1|chr3 (128457700-128458223) |
|
19-754, gnl|rheMac2|chr5 (103534890-103535415) |
|
19-754, gnl|rn3|chr2 (226585708-226585198) |
