Ss1.1-Pig4-TMW8029B15.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTTCCTCGGGGAGGGACAGTTTGCCACGGTTTACAAGGCCAGAGACAAGAACACCAACC AAATTGTCGCCATTAAGAAAATCAAACTTGGACATAGATCAGAAGCTAAAGATGGTATAA ACAGAACAGCCTTAAGAGAGATAAAATTGTTACAGGAGCTAAGTCATCCAAATATAATTG GTCTCCTTGATGCTTTTGGACATAAATCTAATATTAGCCTTGTCTTTGATTTTATGGAAA CTGACCTAGAGGTTATAATAAAGGATAACAGTCTTGTGCTAACACCATCACACATCAAAG CCTACATGTTGATGACTCTTCAAGGATTAGAATATTTGCACCAACATTGGATTCTACATA GGGATCTAAAACCAAACAACTTGTTGCTAGATGAAAATGGAGTTCTAAAACTGGCAGATT TTGGCTTGGCAAAATCATTTGGGAGCCCTAATAGAGCTTATACACATCAGGTTGTAACCA GATGGTATCGGGCTCCTGAGCTACTATTTGGAGCTAGAATGTACGGTGTAGGTGTGGACA TGTGGGCTGTTGGCTGTATATTGGCAGAGTTGCTTCTAAGGGTTCCATTTTTGCCGGGAG ATTCAGACCTTGATCAACTAACAAGAATATTTGAAACTTTGGGCACACCAACTGAAGAAC AGTGGCCTGACATGTGTAGTCTTCCAGATTTCGTGACGTTTAAGAGTTTCCCTGGAATCC CGCTACAACATATCTTCATTGCAGCAGGAGATGACTTGCTAGATCTCATACAAGGCTTAT TCTTATTTAATCCATGTACTCGAATTACAGCCACACAGGCATTGAAAACTAAGTATTTCA GCAATCGGCCAGGGCCAACACCTGGATGTCAGCTGCCAAGACCAAACTGTCCAGTGGAAG CTTTAAAGGAACAGTCCAATCCTGCTGTGGCAACAAAACGGAAGAGAACAGAGGCCTTGG AACAAGGAGGATTACCCAAGAAGCTAATTTTTTAGTTACAGAGAACACTGGACAATATTC TACTACTGAAGGAAATAGTGGAAAAGGCAAATTAGTAGAAAAATAGTAAACATTAAGTAA AAAAGGAATTTGTAAATATTCTACCTGTGTAAAATATGTAAAATTGGGTTGTTTTTATTA AATGTATTTTAAACAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTTCCTCGGGGAGGGACAGTTTGCCACGGTTTACAAGGCCAGAGACAAGAACACCAACC AAATTGTCGCCATTAAGAAAATCAAACTTGGACATAGATCAGAAGCTAAAGATGGTATAA ACAGAACAGCCTTAAGAGAGATAAAATTGTTACAGGAGCTAAGTCATCCAAATATAATTG GTCTCCTTGATGCTTTTGGACATAAATCTAATATTAGCCTTGTCTTTGATTTTATGGAAA CTGACCTAGAGGTTATAATAAAGGATAACAGTCTTGTGCTAACACCATCACACATCAAAG CCTACATGTTGATGACTCTTCAAGGATTAGAATATTTGCACCAACATTGGATTCTACATA GGGATCTAAAACCAAACAACTTGTTGCTAGATGAAAATGGAGTTCTAAAACTGGCAGATT TTGGCTTGGCAAAATCATTTGGGAGCCCTAATAGAGCTTATACACATCAGGTTGTAACCA GATGGTATCGGGCTCCTGAGCTACTATTTGGAGCTAGAATGTACGGTGTAGGTGTGGACA TGTGGGCTGTTGGCTGTATATTGGCAGAGTTGCTTCTAAGGGTTCCATTTTTGCCGGGAG ATTCAGACCTTGATCAACTAACAAGAATATTTGAAACTTTGGGCACACCAACTGAAGAAC AGTGGCCTGACATGTGTAGTCTTCCAGATTTCGTGACGTTTAAGAGTTTCCCTGGAATCC CGCTACAACATATCTTCATTGCAGCAGGAGATGACTTGCTAGATCTCATACAAGGCTTAT TCTTATTTAATCCATGTACTCGAATTACAGCCACACAGGCATTGAAAACTAAGTATTTCA GCAATCGGCCAGGGCCAACACCTGGATGTCAGCTGCCAAGACCAAACTGTCCAGTGGAAG CTTTAAAGGAACAGTCCAATCCTGCTGTGGCAACAAAACGGAAGAGAACAGAGGCCTTGG AACAAGGAGGATTACCCAAGAAGCTAATTTTTTAGTTACAGAGAACACTGGACAATATTC TACTACTGAAGGAAATAGTGGAAAAGGCAAATTAGTAGAAAAATAGTAAACATTAAGTAA AAAAGGAATTTGTAAATATTCTACCTGTGTAAAATATGTAAAATTGGGTTGTTTTTATTA AATGTATTTTAAACAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 364-481, + strand, RNAz p=0.557586 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 364-481, + strand, RNAz p=0.557586 |
| Aligned organism(s): 75 entry(ies) | More info |
| Aligned organism(s): 75 entry(ies) | Help | Less info |
| 355-481, gnl|bosTau2|chr20 (7241254-7241129) | |
| 355-481, gnl|canFam2|chr2 (57204053-57203934) | |
| 355-481, gnl|canFam2|chr2 (57203902-57204075) | |
| 355-481, gnl|danRer3|chr5 (57058594-57058480) | |
| 355-481, gnl|danRer3|chr5 (56895060-56895182) | |
| 355-481, gnl|dasNov1|scaffold_39922 (13320-13201) | |
| 355-481, gnl|dasNov1|scaffold_39922 (13165-13342) | |
| 355-481, gnl|echTel1|scaffold_310158 (44988-44869) | |
| 355-481, gnl|echTel1|scaffold_310158 (44837-45008) | |
| 355-481, gnl|fr1|chrUn (92100803-92100689) | |
| 355-481, gnl|fr1|chrUn (92100665-92100827) | |
| 355-481, gnl|galGal2|chrZ (5166928-5167089) | |
| 355-481, gnl|hg17|chr2 (157893031-157893150) | |
| 355-481, gnl|hg17|chr5 (68591371-68591541) | |
| 355-481, gnl|Hg17|chr5 (68591394-68591519) | |
| 355-481, gnl|loxAfr1|scaffold_15314 (5345-5226) | |
| 355-481, gnl|loxAfr1|scaffold_15314 (5195-5367) | |
| 355-481, gnl|mm7|chr1 (161784896-161784777) | |
| 355-481, gnl|mm7|chr13 (97822560-97822398) | |
| 355-481, gnl|Mm7|chr13 (97822532-97822407) | |
| 355-481, gnl|monDom2|scaffold_115 (557847-557725) | |
| 355-481, gnl|monDom2|scaffold_27 (35525259-35525413) | |
| 355-481, gnl|oryCun1|scaffold_192416 (14077-13958) | |
| 355-481, gnl|oryCun1|scaffold_192416 (13924-14108) | |
| 355-481, gnl|panTro1|chr13 (47094222-47094341) | |
| 355-481, gnl|panTro1|chr4_random (40945585-40945755) | |
| 355-481, gnl|rheMac2|chr12 (20812207-20812326) | |
| 355-481, gnl|rheMac2|chr6 (67119015-67119185) | |
| 355-481, gnl|rn3|chr2 (31432219-31432338) | |
| 355-481, gnl|rn3|chr2 (31432373-31432211) | |
| 355-481, gnl|tetNig1|chr12 (2981915-2982029) | |
| 355-481, gnl|tetNig1|chr12 (2982032-2981910) | |
| 355-481, gnl|xenTro1|scaffold_183 (1178605-1178486) | |
| 355-481, gnl|xenTro1|scaffold_183 (1178448-1178617) | |
| 669-822, gnl|bosTau2|chr20 (7232238-7232085) | |
| 669-822, gnl|canFam2|chr2 (57220598-57220484) | |
| 669-822, gnl|danRer3|chr5 (57063686-57063472) | |
| 669-822, gnl|dasNov1|scaffold_179 (210651-210753) | |
| 669-822, gnl|echTel1|scaffold_310158 (49582-49471) | |
| 669-822, gnl|fr1|chrUn (92101591-92101369) | |
| 669-822, gnl|hg17|chr2 (157892703-157892817) | |
| 669-822, gnl|Hg17|chr5 (68604475-68604628) | |
| 669-822, gnl|mm7|chr1 (161785401-161785287) | |
| 669-822, gnl|Mm7|chr13 (97812422-97812265) | |
| 669-822, gnl|monDom2|scaffold_115 (558189-558079) | |
| 669-822, gnl|oryCun1|scaffold_201912 (9078-8964) | |
| 669-822, gnl|panTro1|chr13 (47093897-47094008) | |
| 669-822, gnl|rheMac2|chr12 (20811878-20811992) | |
| 669-822, gnl|rn3|chr2 (31424174-31424288) | |
| 669-822, gnl|tetNig1|chr12 (2981183-2981409) | |
| 669-822, gnl|xenTro1|scaffold_183 (1182137-1182031) | |
| 965-1160, gnl|bosTau2|chr20 (7229277-7229085) | |
| 965-1160, gnl|canFam2|chr2 (57223679-57223529) | |
| 965-1160, gnl|canFam2|chr2 (57223449-57223676) | |
| 965-1160, gnl|dasNov1|scaffold_60243 (649-498) | |
| 965-1160, gnl|dasNov1|scaffold_60243 (414-652) | |
| 965-1160, gnl|echTel1|scaffold_310158 (55163-55027) | |
| 965-1160, gnl|echTel1|scaffold_310158 (54946-55167) | |
| 965-1160, gnl|hg17|chr2 (157892351-157892508) | |
| 965-1160, gnl|hg17|chr5 (68608651-68608892) | |
| 965-1160, gnl|Hg17|chr5 (68608688-68608893) | |
| 965-1160, gnl|loxAfr1|scaffold_15314 (19479-19333) | |
| 965-1160, gnl|loxAfr1|scaffold_15314 (19246-19482) | |
| 965-1160, gnl|mm7|chr1 (161785744-161785597) | |
| 965-1160, gnl|mm7|chr13 (97809441-97809220) | |
| 965-1160, gnl|Mm7|chr13 (97809414-97809215) | |
| 965-1160, gnl|monDom2|scaffold_115 (558665-558485) | |
| 965-1160, gnl|monDom2|scaffold_27 (35543641-35543933) | |
| 965-1160, gnl|panTro1|chr13 (47093542-47093702) | |
| 965-1160, gnl|panTro1|chr4_random (40962860-40963101) | |
| 965-1160, gnl|rheMac2|chr12 (20811524-20811683) | |
| 965-1160, gnl|rheMac2|chr6 (67140582-67140819) | |
| 965-1160, gnl|rn3|chr2 (31421313-31421466) | |
| 965-1160, gnl|rn3|chr2 (31421543-31421321) | |
| 965-1160, gnl|xenTro1|scaffold_183 (1183892-1183727) |
| Aligned organism(s): 75 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 355-481, gnl|bosTau2|chr20 (7241254-7241129) | |
| 355-481, gnl|canFam2|chr2 (57204053-57203934) | |
| 355-481, gnl|canFam2|chr2 (57203902-57204075) | |
| 355-481, gnl|danRer3|chr5 (57058594-57058480) | |
| 355-481, gnl|danRer3|chr5 (56895060-56895182) | |
| 355-481, gnl|dasNov1|scaffold_39922 (13320-13201) | |
| 355-481, gnl|dasNov1|scaffold_39922 (13165-13342) | |
| 355-481, gnl|echTel1|scaffold_310158 (44988-44869) | |
| 355-481, gnl|echTel1|scaffold_310158 (44837-45008) | |
| 355-481, gnl|fr1|chrUn (92100803-92100689) | |
| 355-481, gnl|fr1|chrUn (92100665-92100827) | |
| 355-481, gnl|galGal2|chrZ (5166928-5167089) | |
| 355-481, gnl|hg17|chr2 (157893031-157893150) | |
| 355-481, gnl|hg17|chr5 (68591371-68591541) | |
| 355-481, gnl|Hg17|chr5 (68591394-68591519) | |
| 355-481, gnl|loxAfr1|scaffold_15314 (5345-5226) | |
| 355-481, gnl|loxAfr1|scaffold_15314 (5195-5367) | |
| 355-481, gnl|mm7|chr1 (161784896-161784777) | |
| 355-481, gnl|mm7|chr13 (97822560-97822398) | |
| 355-481, gnl|Mm7|chr13 (97822532-97822407) | |
| 355-481, gnl|monDom2|scaffold_115 (557847-557725) | |
| 355-481, gnl|monDom2|scaffold_27 (35525259-35525413) | |
| 355-481, gnl|oryCun1|scaffold_192416 (14077-13958) | |
| 355-481, gnl|oryCun1|scaffold_192416 (13924-14108) | |
| 355-481, gnl|panTro1|chr13 (47094222-47094341) | |
| 355-481, gnl|panTro1|chr4_random (40945585-40945755) | |
| 355-481, gnl|rheMac2|chr12 (20812207-20812326) | |
| 355-481, gnl|rheMac2|chr6 (67119015-67119185) | |
| 355-481, gnl|rn3|chr2 (31432219-31432338) | |
| 355-481, gnl|rn3|chr2 (31432373-31432211) | |
| 355-481, gnl|tetNig1|chr12 (2981915-2982029) | |
| 355-481, gnl|tetNig1|chr12 (2982032-2981910) | |
| 355-481, gnl|xenTro1|scaffold_183 (1178605-1178486) | |
| 355-481, gnl|xenTro1|scaffold_183 (1178448-1178617) | |
| 669-822, gnl|bosTau2|chr20 (7232238-7232085) | |
| 669-822, gnl|canFam2|chr2 (57220598-57220484) | |
| 669-822, gnl|danRer3|chr5 (57063686-57063472) | |
| 669-822, gnl|dasNov1|scaffold_179 (210651-210753) | |
| 669-822, gnl|echTel1|scaffold_310158 (49582-49471) | |
| 669-822, gnl|fr1|chrUn (92101591-92101369) | |
| 669-822, gnl|hg17|chr2 (157892703-157892817) | |
| 669-822, gnl|Hg17|chr5 (68604475-68604628) | |
| 669-822, gnl|mm7|chr1 (161785401-161785287) | |
| 669-822, gnl|Mm7|chr13 (97812422-97812265) | |
| 669-822, gnl|monDom2|scaffold_115 (558189-558079) | |
| 669-822, gnl|oryCun1|scaffold_201912 (9078-8964) | |
| 669-822, gnl|panTro1|chr13 (47093897-47094008) | |
| 669-822, gnl|rheMac2|chr12 (20811878-20811992) | |
| 669-822, gnl|rn3|chr2 (31424174-31424288) | |
| 669-822, gnl|tetNig1|chr12 (2981183-2981409) | |
| 669-822, gnl|xenTro1|scaffold_183 (1182137-1182031) | |
| 965-1160, gnl|bosTau2|chr20 (7229277-7229085) | |
| 965-1160, gnl|canFam2|chr2 (57223679-57223529) | |
| 965-1160, gnl|canFam2|chr2 (57223449-57223676) | |
| 965-1160, gnl|dasNov1|scaffold_60243 (649-498) | |
| 965-1160, gnl|dasNov1|scaffold_60243 (414-652) | |
| 965-1160, gnl|echTel1|scaffold_310158 (55163-55027) | |
| 965-1160, gnl|echTel1|scaffold_310158 (54946-55167) | |
| 965-1160, gnl|hg17|chr2 (157892351-157892508) | |
| 965-1160, gnl|hg17|chr5 (68608651-68608892) | |
| 965-1160, gnl|Hg17|chr5 (68608688-68608893) | |
| 965-1160, gnl|loxAfr1|scaffold_15314 (19479-19333) | |
| 965-1160, gnl|loxAfr1|scaffold_15314 (19246-19482) | |
| 965-1160, gnl|mm7|chr1 (161785744-161785597) | |
| 965-1160, gnl|mm7|chr13 (97809441-97809220) | |
| 965-1160, gnl|Mm7|chr13 (97809414-97809215) | |
| 965-1160, gnl|monDom2|scaffold_115 (558665-558485) | |
| 965-1160, gnl|monDom2|scaffold_27 (35543641-35543933) | |
| 965-1160, gnl|panTro1|chr13 (47093542-47093702) | |
| 965-1160, gnl|panTro1|chr4_random (40962860-40963101) | |
| 965-1160, gnl|rheMac2|chr12 (20811524-20811683) | |
| 965-1160, gnl|rheMac2|chr6 (67140582-67140819) | |
| 965-1160, gnl|rn3|chr2 (31421313-31421466) | |
| 965-1160, gnl|rn3|chr2 (31421543-31421321) | |
| 965-1160, gnl|xenTro1|scaffold_183 (1183892-1183727) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| cmu (0.186393) | |
| mgm (0.180343) | |
| nje (0.16592) | |
| hyp (0.142837) | |
| pla (0.133672) | |
| sug (0.127291) | |
| eje (0.0988338) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cmu (0.186393) | |
| mgm (0.180343) | |
| nje (0.16592) | |
| hyp (0.142837) | |
| pla (0.133672) | |
| sug (0.127291) | |
| eje (0.0988338) |