Non-Coding RNA Search

Ss1.1-Pig4-TMW8029C01.3

Sequence:


               
               CCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGCAGAGGAGGAAGGCGGCCCCGGCCC
CGGCCCGTCCCGCGGTCCCGCGGCCCCGCGGCCCCGCGCGCCCCCTGCCCCGGACCCGGA
CCCGGGCCCGTCCGCCGCCGCCATGGCCCGGCCGCTGGTGCCCAGCTCGCAGAAGGCGCT
GCTGCTGGAGCTCAAGGGGCTGCAGGAGGAGCCGGTGGAGGGCTTCCGGGTGACCCTGGT
GGACGAGGGCGATCTGTACAACTGGGAGGTGGCCATCTTCGGGCCCCCCAACACCTACTA
CGAGGGCGGCTACTTCAAGGCGCGCCTCAAGTTCCCCATTGACTACCCTTACTCCCCACC
AGCCTTTCGGTTCCTGACCAAGATGTGGCACCCCAACATCTATGAGACTGGGGACGTGTG
CATCTCCATTCTCCATCCTCCGGTTGACGACCCTCAGAGTGGGGAGCTGCCCTCGGAGCG
GTGGAACCCCACCCAGAATGTCAGGACCATCCTCCTGAGCGTCATCTCCCTCCTCAACGA
ACCGAACACCTTTTCACCTGCCAACGTGGATGCCTCGGTGATGTACAGGAAGTGGAAAGA
GAGCAAAGGCAGGGACCGGGAGTACACGGACATCATCCGGAAGCAGGTCCTGGGGACCAA
GGTGGACGCAGAGCGGGACGGCGTGAAGGTGCCCACTACGCTGGCCGAGTACTGCGTGAA
GACCAAGGCCCCGGTGCCCGACGAGGGCTCGGACCTCTTCTACGATGACTACTACGAGGA
CGGCGAGGCCGAGGCCGACAGCTGCTTTGGGGACGACGAGGATGACTCGGGCACCGAGGA
GTCCTGACACTGCATCCCCACGAATAAACTTACAAATTTTACCTCAGCCGCCCGACTGTG
TGGGCTCTCGGCGCCTCTTGCCGCTGTGACTACCTCCCGGCGGTGCGCGGCCCCCGGCCA
TCCCCAGGCCCCTCCCTGGTCCTCTGCTTCCATCTCGTCCACCCGCTGCTGGAGCTGGGC
CTGTGGACCCCAGCTGCCTACCCATCCTGCTGGCTGGAGCCAGAGATTCGGGGTCCCAGC
TCGAGTAGACGAGTAACTTGGGGTCACTCTTCGCTCTGCTTTGGTTTGTTTGGAATCTAA
ATAAAGCGACTTTATGAGAAGCCAGAGGACCTCGGGGTCCGGGCGCATGGCCTGTGCCCA
TGTGTGTGTGACCACGGCGGGCAGCACCCCTTTGAGCCTGGCGGGCAGGGAGGCCTGGAA
GTTCCCTGAGGATTTCTGTTGGTTGCTGATCTGGGATCTGGGCAGGAGGGAGCTGGTTAT
GAAAGGAAGCCCCAGCTGCCTACAGGTGTGGTCTTAGAGCTGCAGGGGTCCTGGGGGTCC
CACCAGTTGCCTGCAGCCTCCTCCCCCCGCATCCCCGGGGTTGGTGTCGCCTACTGAGCA
TCCCAGAGCTGCCAGTTTGCAATGAGAGACCCTGGAGTCCTCAGCAGCCAGACCCACCCC
CCAGCTCTGCCTGTTTTGTAAATAAAAATTTTATTGGAACAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGCAGAGGAGGAAGGCGGCCCCGGCCC
CGGCCCGTCCCGCGGTCCCGCGGCCCCGCGGCCCCGCGCGCCCCCTGCCCCGGACCCGGA
CCCGGGCCCGTCCGCCGCCGCCATGGCCCGGCCGCTGGTGCCCAGCTCGCAGAAGGCGCT
GCTGCTGGAGCTCAAGGGGCTGCAGGAGGAGCCGGTGGAGGGCTTCCGGGTGACCCTGGT
GGACGAGGGCGATCTGTACAACTGGGAGGTGGCCATCTTCGGGCCCCCCAACACCTACTA
CGAGGGCGGCTACTTCAAGGCGCGCCTCAAGTTCCCCATTGACTACCCTTACTCCCCACC
AGCCTTTCGGTTCCTGACCAAGATGTGGCACCCCAACATCTATGAGACTGGGGACGTGTG
CATCTCCATTCTCCATCCTCCGGTTGACGACCCTCAGAGTGGGGAGCTGCCCTCGGAGCG
GTGGAACCCCACCCAGAATGTCAGGACCATCCTCCTGAGCGTCATCTCCCTCCTCAACGA
ACCGAACACCTTTTCACCTGCCAACGTGGATGCCTCGGTGATGTACAGGAAGTGGAAAGA
GAGCAAAGGCAGGGACCGGGAGTACACGGACATCATCCGGAAGCAGGTCCTGGGGACCAA
GGTGGACGCAGAGCGGGACGGCGTGAAGGTGCCCACTACGCTGGCCGAGTACTGCGTGAA
GACCAAGGCCCCGGTGCCCGACGAGGGCTCGGACCTCTTCTACGATGACTACTACGAGGA
CGGCGAGGCCGAGGCCGACAGCTGCTTTGGGGACGACGAGGATGACTCGGGCACCGAGGA
GTCCTGACACTGCATCCCCACGAATAAACTTACAAATTTTACCTCAGCCGCCCGACTGTG
TGGGCTCTCGGCGCCTCTTGCCGCTGTGACTACCTCCCGGCGGTGCGCGGCCCCCGGCCA
TCCCCAGGCCCCTCCCTGGTCCTCTGCTTCCATCTCGTCCACCCGCTGCTGGAGCTGGGC
CTGTGGACCCCAGCTGCCTACCCATCCTGCTGGCTGGAGCCAGAGATTCGGGGTCCCAGC
TCGAGTAGACGAGTAACTTGGGGTCACTCTTCGCTCTGCTTTGGTTTGTTTGGAATCTAA
ATAAAGCGACTTTATGAGAAGCCAGAGGACCTCGGGGTCCGGGCGCATGGCCTGTGCCCA
TGTGTGTGTGACCACGGCGGGCAGCACCCCTTTGAGCCTGGCGGGCAGGGAGGCCTGGAA
GTTCCCTGAGGATTTCTGTTGGTTGCTGATCTGGGATCTGGGCAGGAGGGAGCTGGTTAT
GAAAGGAAGCCCCAGCTGCCTACAGGTGTGGTCTTAGAGCTGCAGGGGTCCTGGGGGTCC
CACCAGTTGCCTGCAGCCTCCTCCCCCCGCATCCCCGGGGTTGGTGTCGCCTACTGAGCA
TCCCAGAGCTGCCAGTTTGCAATGAGAGACCCTGGAGTCCTCAGCAGCCAGACCCACCCC
CCAGCTCTGCCTGTTTTGTAAATAAAAATTTTATTGGAACAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               UB2R1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               UB2R1_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               351-761, - strand, RNAz p=0.999423

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               351-761, - strand, RNAz p=0.999423

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               125-792, gnl|bosTau2|chr27 (12985807-12985159)
               


               
               152-726, gnl|bosTau2|chr10 (43123632-43123104)
               

               
               152-726, gnl|Mm7|chr11 (94851024-94851613)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               125-792, gnl|bosTau2|chr27 (12985807-12985159)
               


               
               152-726, gnl|bosTau2|chr10 (43123632-43123104)
               

               
               152-726, gnl|Mm7|chr11 (94851024-94851613)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               ctl (0.918414)
               

               
               ssp (0.542079)
               

               
               nms (0.427716)
               

               
               cki (0.330469)
               

               
               hlv (0.278513)
               

               
               ste (0.270416)
               

               
               pla (0.267344)
               

               
               ldo (0.194005)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.918414)
               

               
               ssp (0.542079)
               

               
               nms (0.427716)
               

               
               cki (0.330469)
               

               
               hlv (0.278513)
               

               
               ste (0.270416)
               

               
               pla (0.267344)
               

               
               ldo (0.194005)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

	125-792, gnl\|bosTau2\|chr27 (12985807-12985159)

	152-726, gnl\|bosTau2\|chr10 (43123632-43123104)
	152-726, gnl\|Mm7\|chr11 (94851024-94851613)

	ctl (0.918414)
	ssp (0.542079)
	nms (0.427716)
	cki (0.330469)
	hlv (0.278513)
	ste (0.270416)
	pla (0.267344)
	ldo (0.194005)
	eye (0.170503)
	nco (0.161734)
	csp (0.161186)
	tbr (0.154178)
	cag (0.151194)
	nca (0.136874)
	ute (0.132784)
	cov (0.132153)
	eep (0.122564)
	cly (0.120642)
	eru (0.120048)
	ebs (0.118301)