Non-Coding RNA Search

Ss1.1-Pig4-TMW8029C04.5.5

Sequence:


               
               GAAGCTGTACTTAGAAAAAGACAATGAAAATAAGCAGAAAGTTATAACCTGTCTTGAGGA
AGAACTCTCTGTGGTCACACGTGAGAGAGACCGGCTTCGTGAAGACCTGGATACTTTGTC
AAAAGAAAACAAAGAGCTGGATCAGCTGTCAGAAAAGATGAAGGAGAAAATAGGAGAGCT
CGAATCTCTTCAAGGTGAGCATCTCCATCTCCAAGAGCAGCTGCAGCGTTTGGAAGAGGA
CTCACAGGCACTGTCTTTGGTAAGAAGTGAGCTGGAAAACCAAATCGGACAACTGAATAA
AGAGAAAGACTCACTCATAAGGGAATCTGAAAGCTTGCAGGGCAAACTGAGTGAACTGGA
GCGTGAAAAGCTGACCATTGCCAAGGCCTTGGAGGCTGCACTCATGGAGAAGGGCGAGGT
GGCGGTGAGGCTGAGCTCAACGCAAGAGGAAGTGCACCAGCTGAGAAAAGGCATTGAGAA
ACTCCAGGTCCGCATCGAGGCTGACGAAAAGAAGCAGCTCCACGTCTCAGAGAAGCTAAG
AGAGAGCGAGCGTAGGAATGACGCGCTTCAGGATAAAGTTGAAAACCTTGAAAGGGAACT
GCAGATGGCAGAAGAAAACCAAGAGCTGGTGATTCTTGATGCTGAGAATTCCAAAGCAGA
GGTGGACACCCTGAAAACACAAATAGAATTGATGACCGAAAGCCTGAAAAACTTTAGAAT
TAGACCTTGTCACGACACAGTCAGAAAAAGAAACCCTGACGAAACAACTACAAGAAAAAC
AAGGTCAGGTGTCTGAATGAGACACATTGCTCTCCTCATTGAAAAATCTATTAGAAGGAA
AGGAACAAGAAAAAATACAGATGAAAGAAGAATCTAAAGCTGCAGTGGAGATGCTACAAA
CACAATTGAAAGAGCTAACTGAGGAAGTAGCAGCCTTGTGCAAGGACCAAGAGACCTGGA
AGGCCCAAGGGCAGAGTCTGGACTCACCAGTGCAGGAAATACATCAGCTGAGATGTGGCA
TTGGAAAGCTGAAAGTCCACCGAGAAGCTGATGAAAAGAAGCAGCTCCATATCTTAGAAA
AACTGAAGGAAAGTGAGCATCATGCAGATTTACTTAAGGATAGAGTTAAGAACCTTGAAA
GGGAACTAGAGGTATCAGGAAAAAACCAAGAACATGCGATTCTTGAAGCTGAGAAGTCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGCTGTACTTAGAAAAAGACAATGAAAATAAGCAGAAAGTTATAACCTGTCTTGAGGA
AGAACTCTCTGTGGTCACACGTGAGAGAGACCGGCTTCGTGAAGACCTGGATACTTTGTC
AAAAGAAAACAAAGAGCTGGATCAGCTGTCAGAAAAGATGAAGGAGAAAATAGGAGAGCT
CGAATCTCTTCAAGGTGAGCATCTCCATCTCCAAGAGCAGCTGCAGCGTTTGGAAGAGGA
CTCACAGGCACTGTCTTTGGTAAGAAGTGAGCTGGAAAACCAAATCGGACAACTGAATAA
AGAGAAAGACTCACTCATAAGGGAATCTGAAAGCTTGCAGGGCAAACTGAGTGAACTGGA
GCGTGAAAAGCTGACCATTGCCAAGGCCTTGGAGGCTGCACTCATGGAGAAGGGCGAGGT
GGCGGTGAGGCTGAGCTCAACGCAAGAGGAAGTGCACCAGCTGAGAAAAGGCATTGAGAA
ACTCCAGGTCCGCATCGAGGCTGACGAAAAGAAGCAGCTCCACGTCTCAGAGAAGCTAAG
AGAGAGCGAGCGTAGGAATGACGCGCTTCAGGATAAAGTTGAAAACCTTGAAAGGGAACT
GCAGATGGCAGAAGAAAACCAAGAGCTGGTGATTCTTGATGCTGAGAATTCCAAAGCAGA
GGTGGACACCCTGAAAACACAAATAGAATTGATGACCGAAAGCCTGAAAAACTTTAGAAT
TAGACCTTGTCACGACACAGTCAGAAAAAGAAACCCTGACGAAACAACTACAAGAAAAAC
AAGGTCAGGTGTCTGAATGAGACACATTGCTCTCCTCATTGAAAAATCTATTAGAAGGAA
AGGAACAAGAAAAAATACAGATGAAAGAAGAATCTAAAGCTGCAGTGGAGATGCTACAAA
CACAATTGAAAGAGCTAACTGAGGAAGTAGCAGCCTTGTGCAAGGACCAAGAGACCTGGA
AGGCCCAAGGGCAGAGTCTGGACTCACCAGTGCAGGAAATACATCAGCTGAGATGTGGCA
TTGGAAAGCTGAAAGTCCACCGAGAAGCTGATGAAAAGAAGCAGCTCCATATCTTAGAAA
AACTGAAGGAAAGTGAGCATCATGCAGATTTACTTAAGGATAGAGTTAAGAACCTTGAAA
GGGAACTAGAGGTATCAGGAAAAAACCAAGAACATGCGATTCTTGAAGCTGAGAAGTCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12002982|gb|AAG43427.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12002982|gb|AAG43427.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               206-303, - strand, RNAz p=0.997967

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               206-303, - strand, RNAz p=0.997967

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1200, gnl|bosTau2|chr16 (51264170-51265368)
               

               
               1-1200, gnl|Mm7|chr1 (189186601-189185341)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1200, gnl|bosTau2|chr16 (51264170-51265368)
               

               
               1-1200, gnl|Mm7|chr1 (189186601-189185341)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fty (0.17584)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)

	1-1200, gnl\|bosTau2\|chr16 (51264170-51265368)
	1-1200, gnl\|Mm7\|chr1 (189186601-189185341)