Non-Coding RNA Search

Ss1.1-Pig4-TMW8029C06.3

Sequence:


               
               AATTCAGACTGGTCTTCAGATACAAATCGGCAAGGACAACAGTCTTCATCTGACTGCTAC
ATATATGATTCTGCTACTGGCTACTATTATGACCCCTTGGCAGGAACTTATTATGACCCC
AATACCCAGCAAGAAGTCTATGTGCCTCAGGACCCGGAGTCACCTGAGGAAGAAGAGATT
AAAGAAAAAAAACCCACGAGTCAAGGAAAGTCAAGTAGCAAGAAGGAAACCTTTAAAAGA
GATGGCAAGGAGAAAAAAGACCGAGGCGTGACAAGGTTTCAGGAAAATTCCAGTGAGGGG
ACAGCCCCTCCAGAAGATGTCTTTAAGAAGCCTCTGCCTCCCACTGTGAAGAAGGAAGAG
AGTCCTCCACCACCTAAGGTGGTAAATCCACTGATCGGCCTTCTGGGTGAATATGGAGGA
GACAGTGACTATGAGGAGGAAGAGGAAGAAGAGCAGACCCCTCCTCCACAGCCCCGCACA
GCACAGCCCCAGCGAGAGGAGGTGATCAAGAAGGAAAACGAAGAAGAGAAACTCACTGAC
TGGAATAAACTGGCTTGTCTGCTCTGCAGAAGGCAGTTTCCCAATAAAGAAGTTCTGATC
AAACACCAGCAGCTCTCAGACCTGCACAAGCAAAACCTGGAAATCCATCGGAAGATAAAA
CAGTCTGAGCAGGAGCTAGCCTATCTGGAGAGGAGAGAACGGGAGGGAAGGTTTAAAGAA
AGAGGAAATGATCGCAGGGAAAAGCTCCAGTCTTTTGATTCTCCAGAAAGAAAACGAATT
AAATACTCAAGGGAAACTGACAGTGACCGTAAGCCTGTTGGTAAGGAGGGTATCGACAAT
AGCAGCAAAGGAGGCTGTGTCCAACAGGCCACTGGCTGGAGGAAGGGAACAGGCCTCGGA
TATGGCCATCTTGGATTGGCTTCAGCAGAGGAGACTGAAGGCCGAATAAGGGGCCCTAGT
GTGGGGGCTCCAGGAAGAACCAGCAAGAGACAGTCCAATGAGACTTACCGAGATGCTGTG
CGAAGAGTCATGTTTGCTCGGTATAAAGAACTCGATTAAAGAATGGAGACAAGTCCCATA
GGACACAGACTCCTTCTTGTTTTGTTTGTCCGTCTCTCCTTGTGTTTTGTTACTGTTCTT
GCTGCTAGAACTTTTTTAAATAAACTTTTTTCAATGTGATTTTTTTTTGGGGCAGATTAT
AGGACTTGACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTCAGACTGGTCTTCAGATACAAATCGGCAAGGACAACAGTCTTCATCTGACTGCTAC
ATATATGATTCTGCTACTGGCTACTATTATGACCCCTTGGCAGGAACTTATTATGACCCC
AATACCCAGCAAGAAGTCTATGTGCCTCAGGACCCGGAGTCACCTGAGGAAGAAGAGATT
AAAGAAAAAAAACCCACGAGTCAAGGAAAGTCAAGTAGCAAGAAGGAAACCTTTAAAAGA
GATGGCAAGGAGAAAAAAGACCGAGGCGTGACAAGGTTTCAGGAAAATTCCAGTGAGGGG
ACAGCCCCTCCAGAAGATGTCTTTAAGAAGCCTCTGCCTCCCACTGTGAAGAAGGAAGAG
AGTCCTCCACCACCTAAGGTGGTAAATCCACTGATCGGCCTTCTGGGTGAATATGGAGGA
GACAGTGACTATGAGGAGGAAGAGGAAGAAGAGCAGACCCCTCCTCCACAGCCCCGCACA
GCACAGCCCCAGCGAGAGGAGGTGATCAAGAAGGAAAACGAAGAAGAGAAACTCACTGAC
TGGAATAAACTGGCTTGTCTGCTCTGCAGAAGGCAGTTTCCCAATAAAGAAGTTCTGATC
AAACACCAGCAGCTCTCAGACCTGCACAAGCAAAACCTGGAAATCCATCGGAAGATAAAA
CAGTCTGAGCAGGAGCTAGCCTATCTGGAGAGGAGAGAACGGGAGGGAAGGTTTAAAGAA
AGAGGAAATGATCGCAGGGAAAAGCTCCAGTCTTTTGATTCTCCAGAAAGAAAACGAATT
AAATACTCAAGGGAAACTGACAGTGACCGTAAGCCTGTTGGTAAGGAGGGTATCGACAAT
AGCAGCAAAGGAGGCTGTGTCCAACAGGCCACTGGCTGGAGGAAGGGAACAGGCCTCGGA
TATGGCCATCTTGGATTGGCTTCAGCAGAGGAGACTGAAGGCCGAATAAGGGGCCCTAGT
GTGGGGGCTCCAGGAAGAACCAGCAAGAGACAGTCCAATGAGACTTACCGAGATGCTGTG
CGAAGAGTCATGTTTGCTCGGTATAAAGAACTCGATTAAAGAATGGAGACAAGTCCCATA
GGACACAGACTCCTTCTTGTTTTGTTTGTCCGTCTCTCCTTGTGTTTTGTTACTGTTCTT
GCTGCTAGAACTTTTTTAAATAAACTTTTTTCAATGTGATTTTTTTTTGGGGCAGATTAT
AGGACTTGACTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55621998|ref|XP_517025.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55621998|ref|XP_517025.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               373-490, - strand, RNAz p=0.989149
               

               
               932-1050, + strand, RNAz p=0.563573

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               373-490, - strand, RNAz p=0.989149
               

               
               932-1050, + strand, RNAz p=0.563573

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               127-276, gnl|bosTau2|chr22 (38346135-38346284)
               

               
               127-276, gnl|Hg17|chr3 (50074396-50074545)
               

               
               127-276, gnl|Mm7|chr9 (107519059-107518910)
               


               
               373-630, gnl|bosTau2|chr22 (38348461-38348721)
               

               
               373-630, gnl|Hg17|chr3 (50078679-50078939)
               

               
               373-630, gnl|Mm7|chr9 (107514522-107514268)
               


               
               932-1185, gnl|bosTau2|chr22 (38352840-38353094)
               

               
               932-1185, gnl|Hg17|chr3 (50089443-50089692)
               

               
               932-1185, gnl|Mm7|chr9 (107505467-107505213)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               127-276, gnl|bosTau2|chr22 (38346135-38346284)
               

               
               127-276, gnl|Hg17|chr3 (50074396-50074545)
               

               
               127-276, gnl|Mm7|chr9 (107519059-107518910)
               


               
               373-630, gnl|bosTau2|chr22 (38348461-38348721)
               

               
               373-630, gnl|Hg17|chr3 (50078679-50078939)
               

               
               373-630, gnl|Mm7|chr9 (107514522-107514268)
               


               
               932-1185, gnl|bosTau2|chr22 (38352840-38353094)
               

               
               932-1185, gnl|Hg17|chr3 (50089443-50089692)
               

               
               932-1185, gnl|Mm7|chr9 (107505467-107505213)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               cut (0.339847)
               

               
               cte (0.29274)
               

               
               lnt (0.284616)
               

               
               cbe (0.239234)
               

               
               ecc (0.23007)
               

               
               col (0.195008)
               

               
               cje (0.165235)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               pgl (0.118483)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.339847)
               

               
               cte (0.29274)
               

               
               lnt (0.284616)
               

               
               cbe (0.239234)
               

               
               ecc (0.23007)
               

               
               col (0.195008)
               

               
               cje (0.165235)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               pgl (0.118483)

	373-490, - strand, RNAz p=0.989149
	932-1050, + strand, RNAz p=0.563573

	127-276, gnl\|bosTau2\|chr22 (38346135-38346284)
	127-276, gnl\|Hg17\|chr3 (50074396-50074545)
	127-276, gnl\|Mm7\|chr9 (107519059-107518910)

	373-630, gnl\|bosTau2\|chr22 (38348461-38348721)
	373-630, gnl\|Hg17\|chr3 (50078679-50078939)
	373-630, gnl\|Mm7\|chr9 (107514522-107514268)

	932-1185, gnl\|bosTau2\|chr22 (38352840-38353094)
	932-1185, gnl\|Hg17\|chr3 (50089443-50089692)
	932-1185, gnl\|Mm7\|chr9 (107505467-107505213)

	cut (0.339847)
	cte (0.29274)
	lnt (0.284616)
	cbe (0.239234)
	ecc (0.23007)
	col (0.195008)
	cje (0.165235)
	hyp (0.142837)
	hlv (0.139256)
	pgl (0.118483)