Non-Coding RNA Search

Ss1.1-Pig4-TMW8029C12.3.5

Sequence:


               
               GCAAAATCTCAGGTACTTAATTTATTGTGTTATGGTCTGTTCTGTGATTTGGCTTCACAT
TTGGGTGATTATTACCTGACGTAACAGAGATGTGGTCTCCTCAAAATTGTATTACATTTG
AAAGTGTGGTCCGCTGCATCATATTCAGTGATTTGGGGCAGGGAACTTTCCACTAAAAGT
AGATAAAAGACATGCCTACAGTAACACATGAACCACAAAACAGAGAAGCTGTTTTCAGTT
TTGCTTCTACCAAAACATGGCTTGTATGTTTGGGTGTGTGTGGTGTGTGTGGTGTGTGAG
GGTGGGGGAATGAACTGTCTCTCTTATCCCTCTATTCTGTTCCTGTTGCTATTTAGCTTT
ATTTTAGTCAACTCTACATTATGATGAATTTAGAAATGAGGCTGTGTTAAAAAGATAATC
ATGACATAAGGACCCAATCTCCCATGGTATTACAGATAATTATTTTTGGCTGAGATCTAT
TGTACATTTGTGATTTTCTATGTGTATTAGTACACTTAGCAGAATCTGGTTATTTATTTT
CATGTAGACATAATAACTCACTGAAAGGTAAATTAAGCTGATTACTCCTAGTCAACAATT
AAGGTGCTGCCACTGCAGAGATTTAAGGCCTGGGCCTGATGTGCTGTACTATGAAGCTTT
GTGACTGAACAAAATGTTTACATATGTTGTCTATTTTTTTAATAAACTTTTTTTATAGCT
CAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAAAATCTCAGGTACTTAATTTATTGTGTTATGGTCTGTTCTGTGATTTGGCTTCACAT
TTGGGTGATTATTACCTGACGTAACAGAGATGTGGTCTCCTCAAAATTGTATTACATTTG
AAAGTGTGGTCCGCTGCATCATATTCAGTGATTTGGGGCAGGGAACTTTCCACTAAAAGT
AGATAAAAGACATGCCTACAGTAACACATGAACCACAAAACAGAGAAGCTGTTTTCAGTT
TTGCTTCTACCAAAACATGGCTTGTATGTTTGGGTGTGTGTGGTGTGTGTGGTGTGTGAG
GGTGGGGGAATGAACTGTCTCTCTTATCCCTCTATTCTGTTCCTGTTGCTATTTAGCTTT
ATTTTAGTCAACTCTACATTATGATGAATTTAGAAATGAGGCTGTGTTAAAAAGATAATC
ATGACATAAGGACCCAATCTCCCATGGTATTACAGATAATTATTTTTGGCTGAGATCTAT
TGTACATTTGTGATTTTCTATGTGTATTAGTACACTTAGCAGAATCTGGTTATTTATTTT
CATGTAGACATAATAACTCACTGAAAGGTAAATTAAGCTGATTACTCCTAGTCAACAATT
AAGGTGCTGCCACTGCAGAGATTTAAGGCCTGGGCCTGATGTGCTGTACTATGAAGCTTT
GTGACTGAACAAAATGTTTACATATGTTGTCTATTTTTTTAATAAACTTTTTTTATAGCT
CAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-720, gnl|bosTau2|chr11 (63632715-63633425)
               

               
               1-720, gnl|Hg17|chr1 (229826867-229827612)
               

               
               1-720, gnl|Mm7|chr8 (124534382-124535042)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-720, gnl|bosTau2|chr11 (63632715-63633425)
               

               
               1-720, gnl|Hg17|chr1 (229826867-229827612)
               

               
               1-720, gnl|Mm7|chr8 (124534382-124535042)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               lyg (0.399308)
               

               
               vin (0.332557)
               

               
               sug (0.254582)
               

               
               rec (0.17307)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.399308)
               

               
               vin (0.332557)
               

               
               sug (0.254582)
               

               
               rec (0.17307)

	1-720, gnl\|bosTau2\|chr11 (63632715-63633425)
	1-720, gnl\|Hg17\|chr1 (229826867-229827612)
	1-720, gnl\|Mm7\|chr8 (124534382-124535042)