Ss1.1-Pig4-TMW8029C22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCCGCGGGAAGCCCGGGAATCCCGAAGCCCGGGAATCCCGGGCCCGGGTCGCGAGAGGC GGTGTGGGGGCGGAACCCGCGGGCTGCGAGGCGCCCTGGAGGTGGCGGGGGCCTCGGGAC GGCCAGAGCCGCAGGAGGACGAGGAGGATGAGGAAGAGGCACTGCCGCACTCCGAGGCGG TGGACGTTTTCCAAGAGGGTCTGGCCATGGTGGTGCAGGACCCGCTGCTCTGCGACCTTC CGATCCAGGTTACTTTGGAAGAAGTCAATTCCCAAATAGCCCTCGAATATGGCCAAGCGA TGACAGTCCGAGTGTGCAAGACCGATGGAGAAGTCATGCCTGTGGTTGTCGTCCAGAACG CCACAGTCCTGGACCTGAAGAAAGCCATCCAGAGATACGTGCAGCTCAGGCAGGAGCGAG AAGGAGGCGTTCAACACATCAGCTGGTCCTATGTGTGGAGGACATACCACCTGATGGCTG CGGGAGAGAAGCTCACAGAGGACCGGAAGAAGCTCCGAGATTACGGCATCCGGAACCGGG ATGAGGTGTCTTTCATCAAAAAGCTGCGACAGAAGTGAGTCTCTAGACAGGGACGCCTCC TGTGCTGGCGGCCAGGCTCGTCCCCAGCAGGACACCATGGGCCACTCACTGTGCCCTTTT CCCAGAGGAGGGTGGAGATCGCCTTACACCAGCTGGACCTGGCTGGACGGTCAAGGTGAA CCCCGATGGTGTGGCCGATCCCACGGGGCTGTGGGCTTGGCCCTGTGTACCAAATAAACC TATTTGCTTCTTCAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCCGCGGGAAGCCCGGGAATCCCGAAGCCCGGGAATCCCGGGCCCGGGTCGCGAGAGGC GGTGTGGGGGCGGAACCCGCGGGCTGCGAGGCGCCCTGGAGGTGGCGGGGGCCTCGGGAC GGCCAGAGCCGCAGGAGGACGAGGAGGATGAGGAAGAGGCACTGCCGCACTCCGAGGCGG TGGACGTTTTCCAAGAGGGTCTGGCCATGGTGGTGCAGGACCCGCTGCTCTGCGACCTTC CGATCCAGGTTACTTTGGAAGAAGTCAATTCCCAAATAGCCCTCGAATATGGCCAAGCGA TGACAGTCCGAGTGTGCAAGACCGATGGAGAAGTCATGCCTGTGGTTGTCGTCCAGAACG CCACAGTCCTGGACCTGAAGAAAGCCATCCAGAGATACGTGCAGCTCAGGCAGGAGCGAG AAGGAGGCGTTCAACACATCAGCTGGTCCTATGTGTGGAGGACATACCACCTGATGGCTG CGGGAGAGAAGCTCACAGAGGACCGGAAGAAGCTCCGAGATTACGGCATCCGGAACCGGG ATGAGGTGTCTTTCATCAAAAAGCTGCGACAGAAGTGAGTCTCTAGACAGGGACGCCTCC TGTGCTGGCGGCCAGGCTCGTCCCCAGCAGGACACCATGGGCCACTCACTGTGCCCTTTT CCCAGAGGAGGGTGGAGATCGCCTTACACCAGCTGGACCTGGCTGGACGGTCAAGGTGAA CCCCGATGGTGTGGCCGATCCCACGGGGCTGTGGGCTTGGCCCTGTGTACCAAATAAACC TATTTGCTTCTTCAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 49-250, gnl|bosTau2|chr25 (2533768-2533970) | |
| 49-250, gnl|Hg17|chr16 (43858-44060) | |
| 49-250, gnl|Mm7|chr11 (32157448-32157675) | |
| 340-447, gnl|bosTau2|chr25 (2534696-2534803) | |
| 340-447, gnl|canFam2|chr6 (43476764-43476644) | |
| 340-447, gnl|danRer3|chr3 (41464355-41464242) | |
| 340-447, gnl|dasNov1|scaffold_180620 (948-1085) | |
| 340-447, gnl|fr1|chrUn (67589832-67589700) | |
| 340-447, gnl|hg17|chr16 (45775-45913) | |
| 340-447, gnl|Hg17|chr16 (45777-45884) | |
| 340-447, gnl|loxAfr1|scaffold_16320 (28145-28267) | |
| 340-447, gnl|mm7|chr11 (32159565-32159702) | |
| 340-447, gnl|Mm7|chr11 (32159567-32159674) | |
| 340-447, gnl|monDom2|scaffold_49 (7906231-7906347) | |
| 340-447, gnl|oryCun1|scaffold_95077 (4729-4596) | |
| 340-447, gnl|panTro1|chr18 (48713-48852) | |
| 340-447, gnl|rheMac2|chr20 (11922-12060) | |
| 340-447, gnl|rn3|chr10 (15670149-15670011) | |
| 340-447, gnl|tetNig1|chr3 (11798236-11798348) | |
| 521-789, gnl|bosTau2|chr25 (2535653-2535906) | |
| 521-789, gnl|Hg17|chr16 (47086-47440) | |
| 521-789, gnl|Mm7|chr11 (32160695-32160984) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 49-250, gnl|bosTau2|chr25 (2533768-2533970) | |
| 49-250, gnl|Hg17|chr16 (43858-44060) | |
| 49-250, gnl|Mm7|chr11 (32157448-32157675) | |
| 340-447, gnl|bosTau2|chr25 (2534696-2534803) | |
| 340-447, gnl|canFam2|chr6 (43476764-43476644) | |
| 340-447, gnl|danRer3|chr3 (41464355-41464242) | |
| 340-447, gnl|dasNov1|scaffold_180620 (948-1085) | |
| 340-447, gnl|fr1|chrUn (67589832-67589700) | |
| 340-447, gnl|hg17|chr16 (45775-45913) | |
| 340-447, gnl|Hg17|chr16 (45777-45884) | |
| 340-447, gnl|loxAfr1|scaffold_16320 (28145-28267) | |
| 340-447, gnl|mm7|chr11 (32159565-32159702) | |
| 340-447, gnl|Mm7|chr11 (32159567-32159674) | |
| 340-447, gnl|monDom2|scaffold_49 (7906231-7906347) | |
| 340-447, gnl|oryCun1|scaffold_95077 (4729-4596) | |
| 340-447, gnl|panTro1|chr18 (48713-48852) | |
| 340-447, gnl|rheMac2|chr20 (11922-12060) | |
| 340-447, gnl|rn3|chr10 (15670149-15670011) | |
| 340-447, gnl|tetNig1|chr3 (11798236-11798348) | |
| 521-789, gnl|bosTau2|chr25 (2535653-2535906) | |
| 521-789, gnl|Hg17|chr16 (47086-47440) | |
| 521-789, gnl|Mm7|chr11 (32160695-32160984) |
| Expressed library(ies): 25 entry(ies) | More info |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
| cov (0.528611) | |
| cki (0.330469) | |
| csp (0.322373) | |
| hlv (0.278513) | |
| pla (0.267344) | |
| pgl (0.236967) | |
| ece (0.229305) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| col (0.195008) | |
| sto (0.179824) | |
| fty (0.17584) | |
| ill (0.175593) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| nje (0.16592) | |
| cje (0.165235) | |
| nco (0.161734) | |
| cag (0.151194) | |
| che (0.136314) | |
| ssp (0.13552) | |
| eep (0.122564) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.528611) | |
| cki (0.330469) | |
| csp (0.322373) | |
| hlv (0.278513) | |
| pla (0.267344) | |
| pgl (0.236967) | |
| ece (0.229305) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| col (0.195008) | |
| sto (0.179824) | |
| fty (0.17584) | |
| ill (0.175593) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| nje (0.16592) | |
| cje (0.165235) | |
| nco (0.161734) | |
| cag (0.151194) | |
| che (0.136314) | |
| ssp (0.13552) | |
| eep (0.122564) | |
| nbm (0.0993246) | |
| eje (0.0988338) |