Ss1.1-Pig4-TMW8029D03.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAATCAGAACAATGCAAGACCCTTGATGGAAGCTACTTGTGTGCAGCGTTAAGAGAAAG TCTGAGAGAAACAGTCTTGTGGAATTGTCAATGCCATGACCCTTCCAAAGCAGAGTGCAC CGAAATTTGGAAAAGCTTGTTTGAAGACACTTGTATCCAGAATGCTCAGATGAATCAAGT TCCAGCCTTCACTGAAGAGGATGAAGACGGATTCAACCTGGACAGTTCTTCAGATAACAT GAAGGAGGATGGTGTATTTAAGCGGAATCTGACAGCTCCTTCCTATCATGGAATCAGGGG GATCCAGTCCTGTTTGGAAGTGGCAGAGGCATGTGTGCGGGACACAGTCTGCAATGCACA GTTGGCCCTTTACCTGAAAGCTTGCTCAGCAAATGGGAATCTGTGTGATGTGAAACACTG CCAAGCAGCCATACGGTTCTTCTATCAAAATATGCCTTTTAACGTTGCCCAGATGTTGGC TTTTTGTGACTGTGCTCCATCTGATATACCTTGTCAGCAGTCCAAAGAAGCTCTTCACAG CAAGCCATGTGCACTGAACAGAGTTCCAGCCCCGACCTGCCTCGATGTAATTCGCAGCTG CCAAAATGATGAATTATGCAGGAGGCGCTATAGAATATTCCAGGCAAAATGCTGGCAGCA CGTGACAGCAAAGTGCCATGACGATGAGACCTGCATCAGTACCTTAAATAAGCAGGACTT CACTTGCTCCAGAAGTGATGACTGCAAAGCAGCTTACATGGGTACCCTCGGGACTGCCCT TCAAGGGCAGTGCACCTGTAGGACCACCACCCAAAGTGAAGAATCTTTGTGCAAGATTTT CCAGCATATGCTTCATGGAAAATCATGTTTCAATTATCCAACCCTGTCTAATGTCAAAGG CATTGCATTGCATAAAAGAAAACATGCAAAGGAAATATCCCTCAGTGGATTTCAGTCCCC CTTCAACGGAGAAGTAATCTATGCTGTCATGTGCATGACAGTCACCTGTGGAATCCTTCT CTTGGTCATGTTCAAGCTTAGAAACTTCAGAATATCAAGTCAAACAAGAGATCCTTCACC AATCCAAATACCTGGAGAACCCATGATTCATTAAGAGTCACGGATGGTTAACGGTCCCTG TCTTTAGAGCAAGACTTCGTAGCCTGTCAACAGAATATCCTCTTCATCAGATATCTTCAG AATATCCTCGTCAGTGAGGAAAAGCTTAAAATGGATTTAATGATACTGGACCACTAAGTA TATTAATGTAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAATCAGAACAATGCAAGACCCTTGATGGAAGCTACTTGTGTGCAGCGTTAAGAGAAAG TCTGAGAGAAACAGTCTTGTGGAATTGTCAATGCCATGACCCTTCCAAAGCAGAGTGCAC CGAAATTTGGAAAAGCTTGTTTGAAGACACTTGTATCCAGAATGCTCAGATGAATCAAGT TCCAGCCTTCACTGAAGAGGATGAAGACGGATTCAACCTGGACAGTTCTTCAGATAACAT GAAGGAGGATGGTGTATTTAAGCGGAATCTGACAGCTCCTTCCTATCATGGAATCAGGGG GATCCAGTCCTGTTTGGAAGTGGCAGAGGCATGTGTGCGGGACACAGTCTGCAATGCACA GTTGGCCCTTTACCTGAAAGCTTGCTCAGCAAATGGGAATCTGTGTGATGTGAAACACTG CCAAGCAGCCATACGGTTCTTCTATCAAAATATGCCTTTTAACGTTGCCCAGATGTTGGC TTTTTGTGACTGTGCTCCATCTGATATACCTTGTCAGCAGTCCAAAGAAGCTCTTCACAG CAAGCCATGTGCACTGAACAGAGTTCCAGCCCCGACCTGCCTCGATGTAATTCGCAGCTG CCAAAATGATGAATTATGCAGGAGGCGCTATAGAATATTCCAGGCAAAATGCTGGCAGCA CGTGACAGCAAAGTGCCATGACGATGAGACCTGCATCAGTACCTTAAATAAGCAGGACTT CACTTGCTCCAGAAGTGATGACTGCAAAGCAGCTTACATGGGTACCCTCGGGACTGCCCT TCAAGGGCAGTGCACCTGTAGGACCACCACCCAAAGTGAAGAATCTTTGTGCAAGATTTT CCAGCATATGCTTCATGGAAAATCATGTTTCAATTATCCAACCCTGTCTAATGTCAAAGG CATTGCATTGCATAAAAGAAAACATGCAAAGGAAATATCCCTCAGTGGATTTCAGTCCCC CTTCAACGGAGAAGTAATCTATGCTGTCATGTGCATGACAGTCACCTGTGGAATCCTTCT CTTGGTCATGTTCAAGCTTAGAAACTTCAGAATATCAAGTCAAACAAGAGATCCTTCACC AATCCAAATACCTGGAGAACCCATGATTCATTAAGAGTCACGGATGGTTAACGGTCCCTG TCTTTAGAGCAAGACTTCGTAGCCTGTCAACAGAATATCCTCTTCATCAGATATCTTCAG AATATCCTCGTCAGTGAGGAAAAGCTTAAAATGGATTTAATGATACTGGACCACTAAGTA TATTAATGTAAG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 1-191, gnl|bosTau2|chr23 (4001794-4001984) | |
| 271-622, gnl|bosTau2|chr23 (4008335-4008685) | |
| 271-622, gnl|Hg17|chr6 (55323991-55324341) | |
| 271-622, gnl|Mm7|chr9 (76234518-76234168) | |
| 868-969, gnl|bosTau2|chr23 (4057548-4057650) | |
| 868-969, gnl|canFam2|chr12 (25701352-25701531) | |
| 868-969, gnl|dasNov1|scaffold_144444 (5563-5378) | |
| 868-969, gnl|echTel1|scaffold_267535 (7873-8060) | |
| 868-969, gnl|hg17|chr6 (55371910-55372097) | |
| 868-969, gnl|Hg17|chr6 (55371931-55372033) | |
| 868-969, gnl|loxAfr1|scaffold_18465 (29523-29710) | |
| 868-969, gnl|mm7|chr9 (76205262-76205083) | |
| 868-969, gnl|Mm7|chr9 (76205237-76205138) | |
| 868-969, gnl|monDom2|scaffold_0 (180644493-180644281) | |
| 868-969, gnl|panTro1|chr5 (56658002-56658189) | |
| 868-969, gnl|rheMac2|chr4 (55046290-55046477) | |
| 868-969, gnl|rn3|chr8 (81018766-81018586) | |
| 1039-1153, gnl|bosTau2|chr23 (4060357-4060472) | |
| 1039-1153, gnl|canFam2|chr12 (25704032-25704348) | |
| 1039-1153, gnl|echTel1|scaffold_267535 (10092-10384) | |
| 1039-1153, gnl|hg17|chr6 (55374354-55374643) | |
| 1039-1153, gnl|Hg17|chr6 (55374544-55375072) | |
| 1039-1153, gnl|loxAfr1|scaffold_18465 (32352-32652) | |
| 1039-1153, gnl|mm7|chr9 (76202194-76201925) | |
| 1039-1153, gnl|Mm7|chr9 (76202018-76201907) | |
| 1039-1153, gnl|monDom2|scaffold_0 (180626366-180626018) | |
| 1039-1153, gnl|oryCun1|scaffold_192618 (12022-12305) | |
| 1039-1153, gnl|panTro1|chr5 (56660445-56660734) | |
| 1039-1153, gnl|rheMac2|chr4 (55048735-55049023) | |
| 1039-1153, gnl|rn3|chr8 (81016149-81015903) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-191, gnl|bosTau2|chr23 (4001794-4001984) | |
| 271-622, gnl|bosTau2|chr23 (4008335-4008685) | |
| 271-622, gnl|Hg17|chr6 (55323991-55324341) | |
| 271-622, gnl|Mm7|chr9 (76234518-76234168) | |
| 868-969, gnl|bosTau2|chr23 (4057548-4057650) | |
| 868-969, gnl|canFam2|chr12 (25701352-25701531) | |
| 868-969, gnl|dasNov1|scaffold_144444 (5563-5378) | |
| 868-969, gnl|echTel1|scaffold_267535 (7873-8060) | |
| 868-969, gnl|hg17|chr6 (55371910-55372097) | |
| 868-969, gnl|Hg17|chr6 (55371931-55372033) | |
| 868-969, gnl|loxAfr1|scaffold_18465 (29523-29710) | |
| 868-969, gnl|mm7|chr9 (76205262-76205083) | |
| 868-969, gnl|Mm7|chr9 (76205237-76205138) | |
| 868-969, gnl|monDom2|scaffold_0 (180644493-180644281) | |
| 868-969, gnl|panTro1|chr5 (56658002-56658189) | |
| 868-969, gnl|rheMac2|chr4 (55046290-55046477) | |
| 868-969, gnl|rn3|chr8 (81018766-81018586) | |
| 1039-1153, gnl|bosTau2|chr23 (4060357-4060472) | |
| 1039-1153, gnl|canFam2|chr12 (25704032-25704348) | |
| 1039-1153, gnl|echTel1|scaffold_267535 (10092-10384) | |
| 1039-1153, gnl|hg17|chr6 (55374354-55374643) | |
| 1039-1153, gnl|Hg17|chr6 (55374544-55375072) | |
| 1039-1153, gnl|loxAfr1|scaffold_18465 (32352-32652) | |
| 1039-1153, gnl|mm7|chr9 (76202194-76201925) | |
| 1039-1153, gnl|Mm7|chr9 (76202018-76201907) | |
| 1039-1153, gnl|monDom2|scaffold_0 (180626366-180626018) | |
| 1039-1153, gnl|oryCun1|scaffold_192618 (12022-12305) | |
| 1039-1153, gnl|panTro1|chr5 (56660445-56660734) | |
| 1039-1153, gnl|rheMac2|chr4 (55048735-55049023) | |
| 1039-1153, gnl|rn3|chr8 (81016149-81015903) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pgl (0.118483) |