Non-Coding RNA Search

Ss1.1-Pig4-TMW8029D05.3

Sequence:


               
               AGGATGTCAATGATACCCTGGTGGACATAATAAGCAAAGAGGTTGGAGGTGGAAAACTAG
AAGCAATGAAAATGTTGGCTACTTTAAAAGAGGAAAAACGTTATCTTCAGGATATTTGGT
GATGAAATTGGAAAGTAAATGAAGGGAATTTGGCTTTTGTGGCTAAAAGTACTAAAAGAC
TACTGAAGCTTGAGACTTTTCAATTTTTAAAAATTAAAAAAAATTTACATTTCTTAGAGG
AGGTGCAGGGGATTGAATCAGCTATTTAACAAAATAGCGAATTTTCGACTCAGTTTTCCA
GCTCTCACCCCACCCCCACCCCTCTCCACATTGCAGCCCTCCCTCCCCGCCTGCACCTCT
CAGGCCACCCCCGCCTCCTGGGGAACTTTGGCAGGGACGGGCTCAGGCTGCAGGCCTCCT
GCTGTGTGTGTGCGGGCTTCCCATCCACTGGGGAGGTACGTCATCTGGCAGCTTGTTGCC
AGTATTTTTTAATAATCTAAAAATAATGTATATTCTTATATAAAATGTATCATAAGGAAT
ATTCATTAATTTAGTGTATTGAAATTACCTATGTACAGTTTATCTGATTACATGTTTATA
TCATTTTATCAAATGGTTATTACCAAAACTTTCTGATAAAAAATATTTTAATATAATGCT
TATAATGATTTTTTTGAATGCTAGAAATGTGAAGTATATTTTGAAGTTCCACTCTGGCAC
ATGATTTGTATGTACCACAGTTATTTCTTTTTATATCACGATTCCAGAATTTAGGGACAG
TTTCTTAGCCACGCACACAGCATGTGGAAGTTCCTGGGCCAGGGATCCACCCCACGCCAC
AGCGGTGCCTATGCTAGATCCTGAATGCGCCGAGCCACGAGGCGTTCCAGAACTTAGGGA
AATTTGCATTCGGTTTATAGATGCAAAGCAAGTGTGTATTTTAGTAAAGCTACCGTCTTT
TTTTCCCTGCCTTTTCATTTCTGCTCCTGCTGGTACATTTTTTAGTTTTCTCGCATGATT
TATGTTACCTCCATGTATCACACAAGATGTAACCTGGGCTTAAGATACCTCCTTAGTATC
CTTGGATTTTGTATCTTCCTGCCATTGTCCGTGTAGTTATGTCTGTCAGATTTGAATGGT
CACGTCCCGACCTCAGGCGTGTTGCGGGAGGCGGTGGGGCCTTGTGGGGTGCGGAGGGCA
GAAGCGACGCCCTCGGGAGTGGGATCGGTGCCGTTGCCTCGAGAGGCCCTGCAGAGCTCC
CGGCCCCATCTGCTCCGCGAGGACACGGCGAGAAGTCGGCAGTCCACGAGCGCGGAGGCC
TTCCCCAGAACCCGACGACGCTGGCCCCTGGTCCGAAGGTCCAGCTTCCAGAGCTGTGAG
CAGGTTCTGTTGGTCACAGGCCACCCGATGGTACTGGGACAGCAGCGTGAATGGCCTGAG
ACAATTCCCGATGGCACGTTCTCCCTTCACACTTGTCAGAGGAGACGACAAGGTGTAAAA
GGGTATGAAAAGTTTTCTCCTGGGCTCGAGCACATGTGTGTATTAGAGATTGGCATTTAA
AAGAAAATTCCTACCTGGCAAAGACTTCTGATCATTTTGAAAAATGAAGGTCTCAAGGAA
ATAAAATGTAATCTTAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGATGTCAATGATACCCTGGTGGACATAATAAGCAAAGAGGTTGGAGGTGGAAAACTAG
AAGCAATGAAAATGTTGGCTACTTTAAAAGAGGAAAAACGTTATCTTCAGGATATTTGGT
GATGAAATTGGAAAGTAAATGAAGGGAATTTGGCTTTTGTGGCTAAAAGTACTAAAAGAC
TACTGAAGCTTGAGACTTTTCAATTTTTAAAAATTAAAAAAAATTTACATTTCTTAGAGG
AGGTGCAGGGGATTGAATCAGCTATTTAACAAAATAGCGAATTTTCGACTCAGTTTTCCA
GCTCTCACCCCACCCCCACCCCTCTCCACATTGCAGCCCTCCCTCCCCGCCTGCACCTCT
CAGGCCACCCCCGCCTCCTGGGGAACTTTGGCAGGGACGGGCTCAGGCTGCAGGCCTCCT
GCTGTGTGTGTGCGGGCTTCCCATCCACTGGGGAGGTACGTCATCTGGCAGCTTGTTGCC
AGTATTTTTTAATAATCTAAAAATAATGTATATTCTTATATAAAATGTATCATAAGGAAT
ATTCATTAATTTAGTGTATTGAAATTACCTATGTACAGTTTATCTGATTACATGTTTATA
TCATTTTATCAAATGGTTATTACCAAAACTTTCTGATAAAAAATATTTTAATATAATGCT
TATAATGATTTTTTTGAATGCTAGAAATGTGAAGTATATTTTGAAGTTCCACTCTGGCAC
ATGATTTGTATGTACCACAGTTATTTCTTTTTATATCACGATTCCAGAATTTAGGGACAG
TTTCTTAGCCACGCACACAGCATGTGGAAGTTCCTGGGCCAGGGATCCACCCCACGCCAC
AGCGGTGCCTATGCTAGATCCTGAATGCGCCGAGCCACGAGGCGTTCCAGAACTTAGGGA
AATTTGCATTCGGTTTATAGATGCAAAGCAAGTGTGTATTTTAGTAAAGCTACCGTCTTT
TTTTCCCTGCCTTTTCATTTCTGCTCCTGCTGGTACATTTTTTAGTTTTCTCGCATGATT
TATGTTACCTCCATGTATCACACAAGATGTAACCTGGGCTTAAGATACCTCCTTAGTATC
CTTGGATTTTGTATCTTCCTGCCATTGTCCGTGTAGTTATGTCTGTCAGATTTGAATGGT
CACGTCCCGACCTCAGGCGTGTTGCGGGAGGCGGTGGGGCCTTGTGGGGTGCGGAGGGCA
GAAGCGACGCCCTCGGGAGTGGGATCGGTGCCGTTGCCTCGAGAGGCCCTGCAGAGCTCC
CGGCCCCATCTGCTCCGCGAGGACACGGCGAGAAGTCGGCAGTCCACGAGCGCGGAGGCC
TTCCCCAGAACCCGACGACGCTGGCCCCTGGTCCGAAGGTCCAGCTTCCAGAGCTGTGAG
CAGGTTCTGTTGGTCACAGGCCACCCGATGGTACTGGGACAGCAGCGTGAATGGCCTGAG
ACAATTCCCGATGGCACGTTCTCCCTTCACACTTGTCAGAGGAGACGACAAGGTGTAAAA
GGGTATGAAAAGTTTTCTCCTGGGCTCGAGCACATGTGTGTATTAGAGATTGGCATTTAA
AAGAAAATTCCTACCTGGCAAAGACTTCTGATCATTTTGAAAAATGAAGGTCTCAAGGAA
ATAAAATGTAATCTTAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               226-333, - strand, RNAz p=0.999339

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               226-333, - strand, RNAz p=0.999339

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-782, gnl|bosTau2|chr20 (38381780-38380938)
               

               
               1-782, gnl|Hg17|chr5 (7953047-7953863)
               


               
               1169-1639, gnl|bosTau2|chr20 (38380700-38380213)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-782, gnl|bosTau2|chr20 (38381780-38380938)
               

               
               1-782, gnl|Hg17|chr5 (7953047-7953863)
               


               
               1169-1639, gnl|bosTau2|chr20 (38380700-38380213)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               cut (0.339847)
               

               
               che (0.272628)
               

               
               col (0.195008)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.339847)
               

               
               che (0.272628)
               

               
               col (0.195008)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	1-782, gnl\|bosTau2\|chr20 (38381780-38380938)
	1-782, gnl\|Hg17\|chr5 (7953047-7953863)

	1169-1639, gnl\|bosTau2\|chr20 (38380700-38380213)

	cut (0.339847)
	che (0.272628)
	col (0.195008)
	eye (0.170503)
	cki (0.165235)
	cst (0.140036)
	nca (0.136874)
	ssp (0.13552)
	ute (0.132784)
	ebs (0.118301)
	ecc (0.115035)