Non-Coding RNA Search

Ss1.1-Pig4-TMW8029D16.3

Sequence:


               
               GATGAAGTTCCCTCCGATATTGATTTGAATGACCCATACTTTGCTGAAGAAGCTAAAAAA
ATAGGTATAAAAGAAAAGAAAAAATCAATGAAATCTGCAAAAGATGGCACATCTCCAGAG
GAAGAAGCTGAAATAGAAAGACAAAAGGCTGAAATGGCTTTGCTCGTGATGGATGAGGAA
GAAGAGAGCAAGAAACACTTCAATTATAACAAAATTGTAGAGCACCAGAATCTGAGCAAA
AAGAAGAAAAAACAGCTGATGAAGAAGAAGGAATTACTGGAGGATGACTTTGAGGTAAAC
GTTAAGGATACACGGTTTCAGGCAATGTATACTTCCCATTTGTTCAATTTGGATCCTTCA
GATCCTAATTTCAAGAAAACAAAAGCTATGGAAAAAATCCTTGAGGAGAAAGCCCGTCAG
AGAGAACAAAAAGAACAAGAACTTACTCAGGCAACAAAGAAAAAAGAGAGTGAAATTCAA
AAGGAATCACAAAAGAAGTCCATTGATCCTGCCTTGTCAATGTTGATTAAATCTGTAAAA
AACAAAACAGAACAGTTTCAAGCAAGAAAAAAGCAAAAAGTCAAATAGCTGTAAGTTGTT
TCTTTTTGGTTTGAGAATGTATAAAGTATACAGAAGTGGTAGAAGGAATGCTTATTGGGA
ACAGTGCTACCTTCAAGAATATGAATAAAATCTGACTGAACATTGTAAAATTTCCTTGTG
GATGATTAGCAGACTTGTACTGTATATTTCCATAGATGAATAATTATTTTAATTAATCCT
TATTATAAAATTTTTATAAAGACTGTTTACAATTCTGTGTAAAAAATGGAACAGTACCCA
AGTCTTAAGGCTGAATAAGAGTTAGAAACATTTTGAGAATATGTACATGTAATACATTAA
TTTCTCTGGGAGCAGGAGACAGGTTTAGAGCTTTGTTTAAATAATTTATTTTTCTAGCCA
TAATTAATAGAAGACAATAATCTTTGTTATTTAATCATACTCATTGTAGTTTGTTTATTA
AACTAATTTGTAAATAAAATGTTTTTATTATTTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGAAGTTCCCTCCGATATTGATTTGAATGACCCATACTTTGCTGAAGAAGCTAAAAAA
ATAGGTATAAAAGAAAAGAAAAAATCAATGAAATCTGCAAAAGATGGCACATCTCCAGAG
GAAGAAGCTGAAATAGAAAGACAAAAGGCTGAAATGGCTTTGCTCGTGATGGATGAGGAA
GAAGAGAGCAAGAAACACTTCAATTATAACAAAATTGTAGAGCACCAGAATCTGAGCAAA
AAGAAGAAAAAACAGCTGATGAAGAAGAAGGAATTACTGGAGGATGACTTTGAGGTAAAC
GTTAAGGATACACGGTTTCAGGCAATGTATACTTCCCATTTGTTCAATTTGGATCCTTCA
GATCCTAATTTCAAGAAAACAAAAGCTATGGAAAAAATCCTTGAGGAGAAAGCCCGTCAG
AGAGAACAAAAAGAACAAGAACTTACTCAGGCAACAAAGAAAAAAGAGAGTGAAATTCAA
AAGGAATCACAAAAGAAGTCCATTGATCCTGCCTTGTCAATGTTGATTAAATCTGTAAAA
AACAAAACAGAACAGTTTCAAGCAAGAAAAAAGCAAAAAGTCAAATAGCTGTAAGTTGTT
TCTTTTTGGTTTGAGAATGTATAAAGTATACAGAAGTGGTAGAAGGAATGCTTATTGGGA
ACAGTGCTACCTTCAAGAATATGAATAAAATCTGACTGAACATTGTAAAATTTCCTTGTG
GATGATTAGCAGACTTGTACTGTATATTTCCATAGATGAATAATTATTTTAATTAATCCT
TATTATAAAATTTTTATAAAGACTGTTTACAATTCTGTGTAAAAAATGGAACAGTACCCA
AGTCTTAAGGCTGAATAAGAGTTAGAAACATTTTGAGAATATGTACATGTAATACATTAA
TTTCTCTGGGAGCAGGAGACAGGTTTAGAGCTTTGTTTAAATAATTTATTTTTCTAGCCA
TAATTAATAGAAGACAATAATCTTTGTTATTTAATCATACTCATTGTAGTTTGTTTATTA
AACTAATTTGTAAATAAAATGTTTTTATTATTTTGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q8K089_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8K089_MOUSE

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               289-799, gnl|bosTau2|chr13 (2760453-2760961)
               

               
               289-799, gnl|Hg17|chr20 (13643821-13643280)
               

               
               289-799, gnl|Mm7|chr2 (139861765-139861023)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               289-799, gnl|bosTau2|chr13 (2760453-2760961)
               

               
               289-799, gnl|Hg17|chr20 (13643821-13643280)
               

               
               289-799, gnl|Mm7|chr2 (139861765-139861023)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               fco (0.628832)
               

               
               bfe (0.599431)
               

               
               lin (0.291206)
               

               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               mcp (0.170648)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.628832)
               

               
               bfe (0.599431)
               

               
               lin (0.291206)
               

               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               mcp (0.170648)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)

	289-799, gnl\|bosTau2\|chr13 (2760453-2760961)
	289-799, gnl\|Hg17\|chr20 (13643821-13643280)
	289-799, gnl\|Mm7\|chr2 (139861765-139861023)

	fco (0.628832)
	bfe (0.599431)
	lin (0.291206)
	ret (0.257467)
	mgp (0.230681)
	mcp (0.170648)
	ski (0.146735)
	hyp (0.142837)