Ss1.1-Pig4-TMW8029D22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGCATGACCCCGATGGTCAGGTGGCTGCCTACGTGAGCGAGGCGCATGAGCACGACGGG CATCTGTACCTGGGCTCCTTCAGGGCCCCCTTCCTCTGCAGACTCCGCCTCCAGGATGCG TAAGACCCTGGGTGCCACGGGGGCCAGGAGGTGCGTGGACACACCCTCCTGCCTATGACC CCACTGGTCACCCTCGCCTGGGTTTGGCCAAGTGTCTCCCATGGGGAAGATGCGACCATG TCGAGCCATGTGCTTTCAGACACCTCCCTAGTACTGTGGTTTTCTTGGACCCGGGACTTG GTGTGCTTAGCCGGCCCCAGGTTTGGGGTGGGGGGAGAGCAGTGGGGGTTGGCCGGAGGC TGGATTTTGCTGCTGGTCTGTCCTGTCAGCTTCTGCATCTTTGCTGTTAAAGGGGTGGTA TCATCTCTGGGTGGCGGGGGCCCAGGAGGATTGGGGGCGCTCAGCACAAGCGTATGTGAG GCTGCAGGTGGGGTATGGGGGTGCAAATGGCACTGCTATGTTCCCTAGAGTCCCGAGTCC TGGGCCTGGGCCCTGGGTATCCCTCTTGGGGCTCCACTTCCTGCCTGCCCGGCACCCTCC CTGCCCAAGTCCCCGCCAGCCTTTGAAGACCAGGCCGAGGCTTGTGTGGGGGATGAGCAT GTGATTCCAGCAGCTCAGGACTCACCGGTCTCTCTGTGCATGGCCTGCTGCATGGGTCCG AGGACAGGATTAAAGGCAGGCACAGGGCAGGGGTGTGGGGATTCCTGTTTACAAACCTGG CTCCTCACCCCCAAGCCAGGCGTGAACAGTGCAGTGTCGGTGTCCTGTCCGCTCCTGTGT CACACGCCTGATGCTGCTCTGCATCCTCATGCTGTCCGCATGTGTCCCGGGTGTTGGGTG ACCCATGTGACTGTGATAATTAAATGGATTTCCCTGGGGATTCGTCTCTTTGATAGTGTT GTTGGGCTTCTCTGCTTTAATCTACTTTAACTGTGAGATCTGGCTCCTCTGTGTGTCGTG AGGGCTGTTCTGCTGGGATTGTGTTTAGATTTGCTCGGCAGCCCCCCCCCCCAGCCTGCC ACCCTCACTGGTTCAGTTGCACGACACTGCTCTCCTGTTTTCCAGCCTGCAAAGTAGGGC TGACATCTGCTGCTCCTTTCCTGGGTACTTAATGAGAACACAGCAGGGCTTGTAACTCTG GAGTTGTCTCTGTAATCTGAAAAGATAGTATTTTATATAGGGGTGACATTAAATGTCAGG GAGAGCTGCCAGTCCTGGTGAGACCTGAACCATCTGTGTCTTGTGCTCACAGCTCCACCC CCACCACCACCCCCGTTTTAGGGGAAGAGAGTTGGGATCTGATGGGGCTTGTCCTGAGTT GCCAGCTTTACTCACAGCAGTGTAGGGCAGTCAGACTGGCTTCGTTGTTGTGACGTGACC TGTCCACTTAGTGTTGTTTACGTGATGTCTTAGGAAATGCTGCCTAGTGGTGAACTCCGT GCCTCGAGTGTAGGAGCAGCAAGGTGGAGCCTGACCCTCTGCCATAAACATGTGGCCTAG GCGCCGACCCTGAACACCTCCTCTTGGTTGGGACCCCAGGGCTGGGTTCTCAGTGCAGAG AAGCTGGCAGCTTTTCACAGTTTCCAGCAAAGGAGTCTTTTTGACTCAGATGTTGGTTTT CTGTCTCAGTGTCATTTCCTGTGTTTTATCTAGTAATTTGTCACGGCGAGGTGCAAAATA CAGCCTCATCAGGCTTAAGTACATGATATGCTTTTGTTGTAAATGCAAAGTGTGTTTGTT CTCATGTGAATTACTGTATTTGCTCTTAAAATTAAATCAGGTGACTCCCAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGCATGACCCCGATGGTCAGGTGGCTGCCTACGTGAGCGAGGCGCATGAGCACGACGGG CATCTGTACCTGGGCTCCTTCAGGGCCCCCTTCCTCTGCAGACTCCGCCTCCAGGATGCG TAAGACCCTGGGTGCCACGGGGGCCAGGAGGTGCGTGGACACACCCTCCTGCCTATGACC CCACTGGTCACCCTCGCCTGGGTTTGGCCAAGTGTCTCCCATGGGGAAGATGCGACCATG TCGAGCCATGTGCTTTCAGACACCTCCCTAGTACTGTGGTTTTCTTGGACCCGGGACTTG GTGTGCTTAGCCGGCCCCAGGTTTGGGGTGGGGGGAGAGCAGTGGGGGTTGGCCGGAGGC TGGATTTTGCTGCTGGTCTGTCCTGTCAGCTTCTGCATCTTTGCTGTTAAAGGGGTGGTA TCATCTCTGGGTGGCGGGGGCCCAGGAGGATTGGGGGCGCTCAGCACAAGCGTATGTGAG GCTGCAGGTGGGGTATGGGGGTGCAAATGGCACTGCTATGTTCCCTAGAGTCCCGAGTCC TGGGCCTGGGCCCTGGGTATCCCTCTTGGGGCTCCACTTCCTGCCTGCCCGGCACCCTCC CTGCCCAAGTCCCCGCCAGCCTTTGAAGACCAGGCCGAGGCTTGTGTGGGGGATGAGCAT GTGATTCCAGCAGCTCAGGACTCACCGGTCTCTCTGTGCATGGCCTGCTGCATGGGTCCG AGGACAGGATTAAAGGCAGGCACAGGGCAGGGGTGTGGGGATTCCTGTTTACAAACCTGG CTCCTCACCCCCAAGCCAGGCGTGAACAGTGCAGTGTCGGTGTCCTGTCCGCTCCTGTGT CACACGCCTGATGCTGCTCTGCATCCTCATGCTGTCCGCATGTGTCCCGGGTGTTGGGTG ACCCATGTGACTGTGATAATTAAATGGATTTCCCTGGGGATTCGTCTCTTTGATAGTGTT GTTGGGCTTCTCTGCTTTAATCTACTTTAACTGTGAGATCTGGCTCCTCTGTGTGTCGTG AGGGCTGTTCTGCTGGGATTGTGTTTAGATTTGCTCGGCAGCCCCCCCCCCCAGCCTGCC ACCCTCACTGGTTCAGTTGCACGACACTGCTCTCCTGTTTTCCAGCCTGCAAAGTAGGGC TGACATCTGCTGCTCCTTTCCTGGGTACTTAATGAGAACACAGCAGGGCTTGTAACTCTG GAGTTGTCTCTGTAATCTGAAAAGATAGTATTTTATATAGGGGTGACATTAAATGTCAGG GAGAGCTGCCAGTCCTGGTGAGACCTGAACCATCTGTGTCTTGTGCTCACAGCTCCACCC CCACCACCACCCCCGTTTTAGGGGAAGAGAGTTGGGATCTGATGGGGCTTGTCCTGAGTT GCCAGCTTTACTCACAGCAGTGTAGGGCAGTCAGACTGGCTTCGTTGTTGTGACGTGACC TGTCCACTTAGTGTTGTTTACGTGATGTCTTAGGAAATGCTGCCTAGTGGTGAACTCCGT GCCTCGAGTGTAGGAGCAGCAAGGTGGAGCCTGACCCTCTGCCATAAACATGTGGCCTAG GCGCCGACCCTGAACACCTCCTCTTGGTTGGGACCCCAGGGCTGGGTTCTCAGTGCAGAG AAGCTGGCAGCTTTTCACAGTTTCCAGCAAAGGAGTCTTTTTGACTCAGATGTTGGTTTT CTGTCTCAGTGTCATTTCCTGTGTTTTATCTAGTAATTTGTCACGGCGAGGTGCAAAATA CAGCCTCATCAGGCTTAAGTACATGATATGCTTTTGTTGTAAATGCAAAGTGTGTTTGTT CTCATGTGAATTACTGTATTTGCTCTTAAAATTAAATCAGGTGACTCCCAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-122, gnl|bosTau2|chr13 (28355145-28355266) | |
| 1-122, gnl|canFam2|chr23 (4151890-4152123) | |
| 1-122, gnl|danRer3|chr13 (4825075-4824851) | |
| 1-122, gnl|dasNov1|scaffold_33332 (5420-5188) | |
| 1-122, gnl|echTel1|scaffold_288372 (99988-99785) | |
| 1-122, gnl|fr1|chrUn (139354466-139354240) | |
| 1-122, gnl|galGal2|chr14 (16424462-16424232) | |
| 1-122, gnl|hg17|chr20 (24892446-24892676) | |
| 1-122, gnl|Hg17|chr20 (24892571-24892450) | |
| 1-122, gnl|loxAfr1|scaffold_60480 (4374-4605) | |
| 1-122, gnl|mm7|chr2 (150324833-150325064) | |
| 1-122, gnl|Mm7|chr2 (150324958-150324837) | |
| 1-122, gnl|monDom2|scaffold_1 (62085617-62085831) | |
| 1-122, gnl|oryCun1|scaffold_156199 (5588-5357) | |
| 1-122, gnl|panTro1|chr21 (25267183-25267413) | |
| 1-122, gnl|rheMac2|chr10 (58150638-58150868) | |
| 1-122, gnl|rn3|chr3 (141109657-141109888) | |
| 1-122, gnl|tetNig1|chr17 (7772366-7772151) | |
| 1-122, gnl|xenTro1|scaffold_911 (126498-126717) | |
| 181-851, gnl|bosTau2|chr13 (28355379-28356034) | |
| 181-851, gnl|Hg17|chr20 (24892295-24891633) | |
| 181-851, gnl|Mm7|chr2 (150324665-150323993) | |
| 968-1847, gnl|bosTau2|chr13 (28356112-28357014) | |
| 968-1847, gnl|Mm7|chr2 (150323888-150322913) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-122, gnl|bosTau2|chr13 (28355145-28355266) | |
| 1-122, gnl|canFam2|chr23 (4151890-4152123) | |
| 1-122, gnl|danRer3|chr13 (4825075-4824851) | |
| 1-122, gnl|dasNov1|scaffold_33332 (5420-5188) | |
| 1-122, gnl|echTel1|scaffold_288372 (99988-99785) | |
| 1-122, gnl|fr1|chrUn (139354466-139354240) | |
| 1-122, gnl|galGal2|chr14 (16424462-16424232) | |
| 1-122, gnl|hg17|chr20 (24892446-24892676) | |
| 1-122, gnl|Hg17|chr20 (24892571-24892450) | |
| 1-122, gnl|loxAfr1|scaffold_60480 (4374-4605) | |
| 1-122, gnl|mm7|chr2 (150324833-150325064) | |
| 1-122, gnl|Mm7|chr2 (150324958-150324837) | |
| 1-122, gnl|monDom2|scaffold_1 (62085617-62085831) | |
| 1-122, gnl|oryCun1|scaffold_156199 (5588-5357) | |
| 1-122, gnl|panTro1|chr21 (25267183-25267413) | |
| 1-122, gnl|rheMac2|chr10 (58150638-58150868) | |
| 1-122, gnl|rn3|chr3 (141109657-141109888) | |
| 1-122, gnl|tetNig1|chr17 (7772366-7772151) | |
| 1-122, gnl|xenTro1|scaffold_911 (126498-126717) | |
| 181-851, gnl|bosTau2|chr13 (28355379-28356034) | |
| 181-851, gnl|Hg17|chr20 (24892295-24891633) | |
| 181-851, gnl|Mm7|chr2 (150324665-150323993) | |
| 968-1847, gnl|bosTau2|chr13 (28356112-28357014) | |
| 968-1847, gnl|Mm7|chr2 (150323888-150322913) |
| Expressed library(ies): 25 entry(ies) | More info |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
| cov (0.396458) | |
| cag (0.302389) | |
| lnt (0.284616) | |
| thg (0.253582) | |
| cly (0.241284) | |
| ebs (0.236602) | |
| nms (0.213858) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| fty (0.17584) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| cut (0.169924) | |
| cli (0.152812) | |
| lun (0.150489) | |
| lin (0.145603) | |
| nca (0.136874) | |
| ute (0.132784) | |
| ese (0.126502) | |
| eru (0.120048) | |
| ecc (0.115035) | |
| jej (0.0989218) | |
| ldo (0.0970026) |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.396458) | |
| cag (0.302389) | |
| lnt (0.284616) | |
| thg (0.253582) | |
| cly (0.241284) | |
| ebs (0.236602) | |
| nms (0.213858) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| fty (0.17584) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| cut (0.169924) | |
| cli (0.152812) | |
| lun (0.150489) | |
| lin (0.145603) | |
| nca (0.136874) | |
| ute (0.132784) | |
| ese (0.126502) | |
| eru (0.120048) | |
| ecc (0.115035) | |
| jej (0.0989218) | |
| ldo (0.0970026) |