Non-Coding RNA Search

Ss1.1-Pig4-TMW8029D23.3

Sequence:


               
               CAGATTTAGTGACTCAAACAAGACTGAATATTCTCCAGTGCCATTTTAACTGTTTATAGT
TGTTATATACTCTTTTTTTAATGCCTTTTTTAAATGTCTAGATAAAGTATTTGACTTATA
ATACTTTTTATGTTTTGCCATTAACATTTCTGACAGTTTTCCCTAGAGAAAAATAAATGT
TAATATATAACTTATGATGTATGTTCAGATTTACTGTATCAGTTTAGAAATAACAGAATC
CAGGTCTTCTGACTCTGCATGTCATGCTTTCTTATTATTCTCCCCTGCTAATTCCATAAC
AACTGCTGAAGTACATTTTTACTCTTAGGGCTACAGAAAGCAAGCATCTTCTTAAAAACT
AGAGTTGTTCCTGATAATTGGAAAATGGATATAAGTGAAATCCTTGAGTCATCTAGTAGT
GATGATGAAGATGGTCCAGCTGAAGAAAATGAGGAAGAAAAGGAAAAGGAGGCCAAAAAA
GAAGAAGAGGAGATGCCTGAGGAAGAACTTGATCCTGAAGAGAGGGACAACTTCCTCCAA
CAGCTTTATAAGTTTATGGAAGACAGAGGTACTCCAATCAACAAACCACCTGTTTTGGGC
TATAAAGATCTCAATCTCTTCAAACTCTTTCGACTGGTTTATCATCAAGGTGGATGTGAC
AATATTGATAGTGGTGCTGTATGGAAGCAAATTTATATGGACCTTGGCATTCCTATTTTG
AATTCAGCTGCTTCCTACAATGTAAAAACTGCTTATAGAAAGTATCTCTATGGTTTTGAG
GAATACTGCCGTTCTGCAAATATTCAATTCAGAACTGTCCACCACCATGAACCAAAAGTA
AAAGAGGAAAAAAAAGACTTAGAAGAATCCATGGAAGAGGCTCTAAAAGTAGATCAAGAA
ATGCCTTTAGTAGAAGTGAAGAGTGAACCTGAGGAAAATATTGATTCAAACAGTGAAAGT
GAACGAGATGAGGCAGAATTAAAATCTCCAAGGGGACGACGGAGAATTGCTCGAGATGCA
AATTCTATTAAAAAGGAAATTGAGGAAGAGAAAACAGAAGACAAATTAAAAGATAATGAT
ACAGAAAATAAGGATGTAGATGATGACTGTGAAACTGCAGAGAAAAAAGAAAATGAGCTG
CTACTGGGGAGAAAAAATACACCAAAGCAAAAGGAGAAGAAAATTAAAAAGCAGGAGGAT
TCTGACAAAGACTCAGAAGAAGAGGAAGAGAAAAGCCAAGAGAGGGAAGAAACTGAAAGC
AAATGTGACTCTGAAGGGGAGGAAGATGAGGAAGACACAGAACCCTGCCTAACAGGAACC
AAAGTGAAAGTAAAATATGGACGAGGAAAAACACAGAAAATCTATGAAGCCAGTATTAAA
AGCACTGAAATTGACGATGGAGAAGTTTTATATTTGGTACATTACTATGGATGGAACGTC
AGGTATGATGAATGGGTGAAGGCCGACAGGATAATCTGGCCATTGGACAAAGGTGGACCA
AAGAAAAAACAGAAGAAAAAAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGATTTAGTGACTCAAACAAGACTGAATATTCTCCAGTGCCATTTTAACTGTTTATAGT
TGTTATATACTCTTTTTTTAATGCCTTTTTTAAATGTCTAGATAAAGTATTTGACTTATA
ATACTTTTTATGTTTTGCCATTAACATTTCTGACAGTTTTCCCTAGAGAAAAATAAATGT
TAATATATAACTTATGATGTATGTTCAGATTTACTGTATCAGTTTAGAAATAACAGAATC
CAGGTCTTCTGACTCTGCATGTCATGCTTTCTTATTATTCTCCCCTGCTAATTCCATAAC
AACTGCTGAAGTACATTTTTACTCTTAGGGCTACAGAAAGCAAGCATCTTCTTAAAAACT
AGAGTTGTTCCTGATAATTGGAAAATGGATATAAGTGAAATCCTTGAGTCATCTAGTAGT
GATGATGAAGATGGTCCAGCTGAAGAAAATGAGGAAGAAAAGGAAAAGGAGGCCAAAAAA
GAAGAAGAGGAGATGCCTGAGGAAGAACTTGATCCTGAAGAGAGGGACAACTTCCTCCAA
CAGCTTTATAAGTTTATGGAAGACAGAGGTACTCCAATCAACAAACCACCTGTTTTGGGC
TATAAAGATCTCAATCTCTTCAAACTCTTTCGACTGGTTTATCATCAAGGTGGATGTGAC
AATATTGATAGTGGTGCTGTATGGAAGCAAATTTATATGGACCTTGGCATTCCTATTTTG
AATTCAGCTGCTTCCTACAATGTAAAAACTGCTTATAGAAAGTATCTCTATGGTTTTGAG
GAATACTGCCGTTCTGCAAATATTCAATTCAGAACTGTCCACCACCATGAACCAAAAGTA
AAAGAGGAAAAAAAAGACTTAGAAGAATCCATGGAAGAGGCTCTAAAAGTAGATCAAGAA
ATGCCTTTAGTAGAAGTGAAGAGTGAACCTGAGGAAAATATTGATTCAAACAGTGAAAGT
GAACGAGATGAGGCAGAATTAAAATCTCCAAGGGGACGACGGAGAATTGCTCGAGATGCA
AATTCTATTAAAAAGGAAATTGAGGAAGAGAAAACAGAAGACAAATTAAAAGATAATGAT
ACAGAAAATAAGGATGTAGATGATGACTGTGAAACTGCAGAGAAAAAAGAAAATGAGCTG
CTACTGGGGAGAAAAAATACACCAAAGCAAAAGGAGAAGAAAATTAAAAAGCAGGAGGAT
TCTGACAAAGACTCAGAAGAAGAGGAAGAGAAAAGCCAAGAGAGGGAAGAAACTGAAAGC
AAATGTGACTCTGAAGGGGAGGAAGATGAGGAAGACACAGAACCCTGCCTAACAGGAACC
AAAGTGAAAGTAAAATATGGACGAGGAAAAACACAGAAAATCTATGAAGCCAGTATTAAA
AGCACTGAAATTGACGATGGAGAAGTTTTATATTTGGTACATTACTATGGATGGAACGTC
AGGTATGATGAATGGGTGAAGGCCGACAGGATAATCTGGCCATTGGACAAAGGTGGACCA
AAGAAAAAACAGAAGAAAAAAGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61824102|ref|XP_581494.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61824102|ref|XP_581494.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               334-453, - strand, RNAz p=0.940109

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               334-453, - strand, RNAz p=0.940109

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-495, gnl|bosTau2|chr10 (48043722-48043223)
               

               
               1-495, gnl|Hg17|chr14 (57866126-57866640)
               


               
               664-776, gnl|bosTau2|chr10 (48031798-48031685)
               

               
               664-776, gnl|Hg17|chr14 (57883491-57883604)
               

               
               664-776, gnl|Mm7|chr12 (69005370-69005481)
               


               
               993-1245, gnl|bosTau2|chr10 (48026979-48026727)
               

               
               993-1245, gnl|Hg17|chr14 (57887543-57887795)
               

               
               993-1245, gnl|Mm7|chr12 (69010917-69011178)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-495, gnl|bosTau2|chr10 (48043722-48043223)
               

               
               1-495, gnl|Hg17|chr14 (57866126-57866640)
               


               
               664-776, gnl|bosTau2|chr10 (48031798-48031685)
               

               
               664-776, gnl|Hg17|chr14 (57883491-57883604)
               

               
               664-776, gnl|Mm7|chr12 (69005370-69005481)
               


               
               993-1245, gnl|bosTau2|chr10 (48026979-48026727)
               

               
               993-1245, gnl|Hg17|chr14 (57887543-57887795)
               

               
               993-1245, gnl|Mm7|chr12 (69010917-69011178)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cbl (0.229595)
               

               
               sag (0.182715)
               

               
               jej (0.0989218)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.229595)
               

               
               sag (0.182715)
               

               
               jej (0.0989218)

	1-495, gnl\|bosTau2\|chr10 (48043722-48043223)
	1-495, gnl\|Hg17\|chr14 (57866126-57866640)

	664-776, gnl\|bosTau2\|chr10 (48031798-48031685)
	664-776, gnl\|Hg17\|chr14 (57883491-57883604)
	664-776, gnl\|Mm7\|chr12 (69005370-69005481)

	993-1245, gnl\|bosTau2\|chr10 (48026979-48026727)
	993-1245, gnl\|Hg17\|chr14 (57887543-57887795)
	993-1245, gnl\|Mm7\|chr12 (69010917-69011178)