Non-Coding RNA Search

Ss1.1-Pig4-TMW8029D24.5

Sequence:


               
               TGAGACTTGCCGAGGACCGCCGTCCTTCCAGGCTGGGTGGGGGGGTGGCCCTGGTGTAGG
GGCTGTGGCGGTGCGCGGGGACCCGGTGCGGTGGCTGCGGTGGCTGCGGGGCTGACGAGA
AGCTACTAAGTTCCTGTGGACGCAAAGTAGAATTTCATAAGAACATAATGGATGGAGAAG
AGAAAACCTATGGTGGCTGTGAGGGCCCTGATGCCATGTATGTCAAATTGATATCTTCAG
ATGGTCATGAATTTATTGTAAAAAGAGAACACGCGCTAACATCAGGAACAATAAAAGCCA
TGTTGAGTGGCCCTGGTCAGTTTGCTGAGAATGAAACTAATGAAGTCAATTTTAGAGAGA
TCCCTTCACATGTGCTATCAAAAGTGTGCATGTATTTTACCTACAAGGTTCGCTACACTA
ACAGCTCCACGGAGATTCCTGAATTCCCAATTGCACCTGAAATTGCACTGGAACTGCTGA
TGGCTGCGAACTTCCTAGATTGTTAAATAAAATAAATTATAATAAACTGTTAACTTTTTT
CAGTATTTAATACCTGTAGTTCAGTTAGTAATTTTTTCATATATAGCATGTTGCCTGTGT
GCAATTGAACTTTAAAGTTCGTTGCAAAGCAGATTATCTTCTGTTCTTTTGCATAGCAAT
CAGAGTTGAAATTTGTTTGCTACATCAACAAATTAAGGACATTTTCACAAACTGAGAAAT
AAACAAATATGCCAATTCGTAGGTGGTTTTGCCTTATCCTTTGGATGTGATTTTTAAAAT
TAGAGCAGTGGTGATACAGTAAATGTTGAAACTTAGGCATAAATTGAACACGTTCTACAG
GTAAATAATGGGGCTACATATTTTTATGTTTTTAGTGTTTTTTTAAAAACCTATTCTGAT
ATTATAGTTGTCATTAGTGTTACTAGAGTTATGCAATTGCATATAATTGCAAATAACTGC
ATTATAAACATGTTTATAACTTAGCCAAAATATTGATTTTTATAACTGTCAAAGACATAA
GAGTTGAAATTTCTTATGTGTCTTTTGATAAACTGCAGCATTGTTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGACTTGCCGAGGACCGCCGTCCTTCCAGGCTGGGTGGGGGGGTGGCCCTGGTGTAGG
GGCTGTGGCGGTGCGCGGGGACCCGGTGCGGTGGCTGCGGTGGCTGCGGGGCTGACGAGA
AGCTACTAAGTTCCTGTGGACGCAAAGTAGAATTTCATAAGAACATAATGGATGGAGAAG
AGAAAACCTATGGTGGCTGTGAGGGCCCTGATGCCATGTATGTCAAATTGATATCTTCAG
ATGGTCATGAATTTATTGTAAAAAGAGAACACGCGCTAACATCAGGAACAATAAAAGCCA
TGTTGAGTGGCCCTGGTCAGTTTGCTGAGAATGAAACTAATGAAGTCAATTTTAGAGAGA
TCCCTTCACATGTGCTATCAAAAGTGTGCATGTATTTTACCTACAAGGTTCGCTACACTA
ACAGCTCCACGGAGATTCCTGAATTCCCAATTGCACCTGAAATTGCACTGGAACTGCTGA
TGGCTGCGAACTTCCTAGATTGTTAAATAAAATAAATTATAATAAACTGTTAACTTTTTT
CAGTATTTAATACCTGTAGTTCAGTTAGTAATTTTTTCATATATAGCATGTTGCCTGTGT
GCAATTGAACTTTAAAGTTCGTTGCAAAGCAGATTATCTTCTGTTCTTTTGCATAGCAAT
CAGAGTTGAAATTTGTTTGCTACATCAACAAATTAAGGACATTTTCACAAACTGAGAAAT
AAACAAATATGCCAATTCGTAGGTGGTTTTGCCTTATCCTTTGGATGTGATTTTTAAAAT
TAGAGCAGTGGTGATACAGTAAATGTTGAAACTTAGGCATAAATTGAACACGTTCTACAG
GTAAATAATGGGGCTACATATTTTTATGTTTTTAGTGTTTTTTTAAAAACCTATTCTGAT
ATTATAGTTGTCATTAGTGTTACTAGAGTTATGCAATTGCATATAATTGCAAATAACTGC
ATTATAAACATGTTTATAACTTAGCCAAAATATTGATTTTTATAACTGTCAAAGACATAA
GAGTTGAAATTTCTTATGTGTCTTTTGATAAACTGCAGCATTGTTTAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|32766703|gb|AAH55268.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|32766703|gb|AAH55268.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               391-510, - strand, RNAz p=0.940529
               

               
               587-704, + strand, RNAz p=0.898796

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               391-510, - strand, RNAz p=0.940529
               

               
               587-704, + strand, RNAz p=0.898796

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_005648, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_005648, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               312-1066, gnl|bosTau2|chr14 (20759467-20760218)
               

               
               312-1066, gnl|Hg17|chr8 (75021613-75020891)
               

               
               312-1066, gnl|Mm7|chr1 (16832711-16832002)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               312-1066, gnl|bosTau2|chr14 (20759467-20760218)
               

               
               312-1066, gnl|Hg17|chr8 (75021613-75020891)
               

               
               312-1066, gnl|Mm7|chr1 (16832711-16832002)

Expressed library(ies): 44 entry(ies)

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Expressed library(ies): 44 entry(ies)

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               isp (1.05263)
               

               
               hea (0.817996)
               

               
               bfe (0.749288)
               

               
               sug (0.509165)
               

               
               cki (0.495704)
               

               
               cbe (0.478469)
               

               
               pgl (0.473934)
               

               
               ssp (0.406559)
               

               
               fcc (0.39557)
               

               
               ova (0.387397)
               

               
               tra (0.369276)
               

               
               nep (0.36785)
               

               
               cut (0.339847)
               

               
               vin (0.332557)
               

               
               mga (0.32041)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               lnt (0.284616)
               

               
               nca (0.273748)
               

               
               ste (0.270416)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               fli (0.202881)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 44 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (1.05263)
               

               
               hea (0.817996)
               

               
               bfe (0.749288)
               

               
               sug (0.509165)
               

               
               cki (0.495704)
               

               
               cbe (0.478469)
               

               
               pgl (0.473934)
               

               
               ssp (0.406559)
               

               
               fcc (0.39557)
               

               
               ova (0.387397)
               

               
               tra (0.369276)
               

               
               nep (0.36785)
               

               
               cut (0.339847)
               

               
               vin (0.332557)
               

               
               mga (0.32041)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               lnt (0.284616)
               

               
               nca (0.273748)
               

               
               ste (0.270416)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               fli (0.202881)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	391-510, - strand, RNAz p=0.940529
	587-704, + strand, RNAz p=0.898796

	312-1066, gnl\|bosTau2\|chr14 (20759467-20760218)
	312-1066, gnl\|Hg17\|chr8 (75021613-75020891)
	312-1066, gnl\|Mm7\|chr1 (16832711-16832002)

	isp (1.05263)
	hea (0.817996)
	bfe (0.749288)
	sug (0.509165)
	cki (0.495704)
	cbe (0.478469)
	pgl (0.473934)
	ssp (0.406559)
	fcc (0.39557)
	ova (0.387397)
	tra (0.369276)
	nep (0.36785)
	cut (0.339847)
	vin (0.332557)
	mga (0.32041)
	cte (0.29274)
	liv (0.292569)
	lin (0.291206)
	spl (0.286369)
	lnt (0.284616)
	nca (0.273748)
	ste (0.270416)
	ecc (0.23007)
	nms (0.213858)
	cty (0.20816)
	fli (0.202881)
	eje (0.197668)
	col (0.195008)
	cmu (0.186393)
	sto (0.179824)
	gul (0.177588)
	ton (0.1755)
	cag (0.151194)
	lun (0.150489)
	fat (0.147427)
	pty (0.142714)
	csk (0.140746)
	lyg (0.133103)
	kid (0.129735)
	bla (0.124347)
	med (0.116252)
	spc (0.113366)
	nbm (0.0993246)
	ldo (0.0970026)