Ss1.1-Pig4-TMW8029E08.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCTGAATTTTCTGTTGCCAGATGTCTTTAATTCAGCTGATGACTTTGATTCCTGGTTTG ATACAAACAATTGCCTTGGGGATCAAAAGCTAGTTGAGAGGCTTCATATGGTTTTGCGTC CATTCCTCCTTCGTCGAATTAAGGCTGATGTTGAGAAGAGTTTGCCTCCAAAGAAGGAAG TAAAAATCTATGTGGGTCTCAGTAAAATGCAAAGAGAATGGTATACTCGGATATTAATGA AGGATATAGATATACTAAACTCTGCAGGGAAGATGGACAAAATGAGTCTGTTGAACATCT TGATGCAGTTGAGGAAGTGCTGTAATCATCCATATCTATTTGATGGAGCTGAACCTGGTC CACCTTATACAACGGACATGCATCTAGTTACCAACAGTGGCAAAATGGTGGTGTTAGACA AACTGCTCCCTAAATTAAAAGAGCAAGGTTCACGAGTACTAATCTTCAGTCAGATGACAA GGGTGTTGGATATTTTGGAAGATTATTGCATGTGGAGAAATTATGAGTATTGTAGGTTGG ATGGGCAGACACCCCATGATGAGAGACAAGAGTCCATCAATGCATACAATGAACCAAATA GCACAAAGTTTGTTTTCATGTTAAGCACACGTGCTGGTGGTCTTGGCATCAATCTTGCTA CCGCTGATGTAGTAATTTTGTATGACTCAGATTGGAATCCCCAAGTAGATCTTCAGGCTA TGGACCGAGCCCATAGAATTGGACAAACCAAGACAGTCAGAGTGTTCCGCTTCATAACTG ATAACACAGTAGAAGAAAGAATAGTGGAACGTGCTGAGATGAAACTCAGACTGGATTCCA TAGTCATCCAACAAGGAAGACTTGTGGATCAGAATCTTAACAAAATCGGGAAAGATGAAA TGCTTCAAATGATAAGGCATGGGGCAACACATGTATTTGCTTCAAAGGAAAGTGAGATTA CTGATGAGGATATTGATGGTATTTTGGAAAGAGGTGCCAAGAAGACTGCAGAGATGAATG AAAAGCTCTCCAAGATGGGTGAAAGCTCACTTAGAAACTTTACAATGGATACAGAGTCAA GTGTTTATAACTTTGAAGGAGAAGATTATAGAGAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCTGAATTTTCTGTTGCCAGATGTCTTTAATTCAGCTGATGACTTTGATTCCTGGTTTG ATACAAACAATTGCCTTGGGGATCAAAAGCTAGTTGAGAGGCTTCATATGGTTTTGCGTC CATTCCTCCTTCGTCGAATTAAGGCTGATGTTGAGAAGAGTTTGCCTCCAAAGAAGGAAG TAAAAATCTATGTGGGTCTCAGTAAAATGCAAAGAGAATGGTATACTCGGATATTAATGA AGGATATAGATATACTAAACTCTGCAGGGAAGATGGACAAAATGAGTCTGTTGAACATCT TGATGCAGTTGAGGAAGTGCTGTAATCATCCATATCTATTTGATGGAGCTGAACCTGGTC CACCTTATACAACGGACATGCATCTAGTTACCAACAGTGGCAAAATGGTGGTGTTAGACA AACTGCTCCCTAAATTAAAAGAGCAAGGTTCACGAGTACTAATCTTCAGTCAGATGACAA GGGTGTTGGATATTTTGGAAGATTATTGCATGTGGAGAAATTATGAGTATTGTAGGTTGG ATGGGCAGACACCCCATGATGAGAGACAAGAGTCCATCAATGCATACAATGAACCAAATA GCACAAAGTTTGTTTTCATGTTAAGCACACGTGCTGGTGGTCTTGGCATCAATCTTGCTA CCGCTGATGTAGTAATTTTGTATGACTCAGATTGGAATCCCCAAGTAGATCTTCAGGCTA TGGACCGAGCCCATAGAATTGGACAAACCAAGACAGTCAGAGTGTTCCGCTTCATAACTG ATAACACAGTAGAAGAAAGAATAGTGGAACGTGCTGAGATGAAACTCAGACTGGATTCCA TAGTCATCCAACAAGGAAGACTTGTGGATCAGAATCTTAACAAAATCGGGAAAGATGAAA TGCTTCAAATGATAAGGCATGGGGCAACACATGTATTTGCTTCAAAGGAAAGTGAGATTA CTGATGAGGATATTGATGGTATTTTGGAAAGAGGTGCCAAGAAGACTGCAGAGATGAATG AAAAGCTCTCCAAGATGGGTGAAAGCTCACTTAGAAACTTTACAATGGATACAGAGTCAA GTGTTTATAACTTTGAAGGAGAAGATTATAGAGAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 220-449, gnl|bosTau2|chr17 (8965628-8965857) | |
| 220-449, gnl|Hg17|chr4 (144815209-144815438) | |
| 220-449, gnl|Mm7|chr8 (79259181-79258952) | |
| 570-723, gnl|bosTau2|chr17 (8967611-8967764) | |
| 570-723, gnl|canFam2|chr15 (45770082-45770273) | |
| 570-723, gnl|danRer3|chr5 (8450327-8450501) | |
| 570-723, gnl|dasNov1|scaffold_17140 (20335-20153) | |
| 570-723, gnl|echTel1|scaffold_276592 (37515-37697) | |
| 570-723, gnl|fr1|chrUn (164897308-164897142) | |
| 570-723, gnl|galGal2|chr4 (31106657-31106842) | |
| 570-723, gnl|hg17|chr4 (144817543-144817728) | |
| 570-723, gnl|Hg17|chr4 (144817544-144817697) | |
| 570-723, gnl|loxAfr1|scaffold_52557 (4-178) | |
| 570-723, gnl|mm7|chr8 (79255980-79255817) | |
| 570-723, gnl|Mm7|chr8 (79255977-79255824) | |
| 570-723, gnl|monDom2|scaffold_9 (11940667-11940842) | |
| 570-723, gnl|oryCun1|scaffold_143196 (9728-9891) | |
| 570-723, gnl|panTro1|chr3 (162120334-162120519) | |
| 570-723, gnl|rheMac2|chr5 (135955941-135956126) | |
| 570-723, gnl|rn3|chr19 (29146269-29146454) | |
| 570-723, gnl|tetNig1|chr18 (6788409-6788565) | |
| 570-723, gnl|xenTro1|scaffold_753 (195737-195908) | |
| 854-1004, gnl|bosTau2|chr17 (8971964-8972114) | |
| 854-1004, gnl|canFam2|chr15 (45774709-45774898) | |
| 854-1004, gnl|danRer3|chr5 (8452468-8452635) | |
| 854-1004, gnl|dasNov1|scaffold_17140 (15853-15665) | |
| 854-1004, gnl|echTel1|scaffold_276592 (43964-44148) | |
| 854-1004, gnl|fr1|chrUn (164896821-164896651) | |
| 854-1004, gnl|galGal2|chr4 (31108812-31109033) | |
| 854-1004, gnl|hg17|chr4 (144822240-144822427) | |
| 854-1004, gnl|Hg17|chr4 (144822265-144822415) | |
| 854-1004, gnl|loxAfr1|scaffold_52557 (4470-4650) | |
| 854-1004, gnl|mm7|chr8 (79251218-79251023) | |
| 854-1004, gnl|Mm7|chr8 (79251183-79251033) | |
| 854-1004, gnl|monDom2|scaffold_9 (11945098-11945286) | |
| 854-1004, gnl|oryCun1|scaffold_33617 (1800-1621) | |
| 854-1004, gnl|panTro1|chr3 (162125034-162125221) | |
| 854-1004, gnl|rheMac2|chr5 (135960568-135960755) | |
| 854-1004, gnl|rn3|chr19 (29150095-29150300) | |
| 854-1004, gnl|tetNig1|chr18 (6788896-6789086) | |
| 854-1004, gnl|xenTro1|scaffold_753 (198984-199175) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 220-449, gnl|bosTau2|chr17 (8965628-8965857) | |
| 220-449, gnl|Hg17|chr4 (144815209-144815438) | |
| 220-449, gnl|Mm7|chr8 (79259181-79258952) | |
| 570-723, gnl|bosTau2|chr17 (8967611-8967764) | |
| 570-723, gnl|canFam2|chr15 (45770082-45770273) | |
| 570-723, gnl|danRer3|chr5 (8450327-8450501) | |
| 570-723, gnl|dasNov1|scaffold_17140 (20335-20153) | |
| 570-723, gnl|echTel1|scaffold_276592 (37515-37697) | |
| 570-723, gnl|fr1|chrUn (164897308-164897142) | |
| 570-723, gnl|galGal2|chr4 (31106657-31106842) | |
| 570-723, gnl|hg17|chr4 (144817543-144817728) | |
| 570-723, gnl|Hg17|chr4 (144817544-144817697) | |
| 570-723, gnl|loxAfr1|scaffold_52557 (4-178) | |
| 570-723, gnl|mm7|chr8 (79255980-79255817) | |
| 570-723, gnl|Mm7|chr8 (79255977-79255824) | |
| 570-723, gnl|monDom2|scaffold_9 (11940667-11940842) | |
| 570-723, gnl|oryCun1|scaffold_143196 (9728-9891) | |
| 570-723, gnl|panTro1|chr3 (162120334-162120519) | |
| 570-723, gnl|rheMac2|chr5 (135955941-135956126) | |
| 570-723, gnl|rn3|chr19 (29146269-29146454) | |
| 570-723, gnl|tetNig1|chr18 (6788409-6788565) | |
| 570-723, gnl|xenTro1|scaffold_753 (195737-195908) | |
| 854-1004, gnl|bosTau2|chr17 (8971964-8972114) | |
| 854-1004, gnl|canFam2|chr15 (45774709-45774898) | |
| 854-1004, gnl|danRer3|chr5 (8452468-8452635) | |
| 854-1004, gnl|dasNov1|scaffold_17140 (15853-15665) | |
| 854-1004, gnl|echTel1|scaffold_276592 (43964-44148) | |
| 854-1004, gnl|fr1|chrUn (164896821-164896651) | |
| 854-1004, gnl|galGal2|chr4 (31108812-31109033) | |
| 854-1004, gnl|hg17|chr4 (144822240-144822427) | |
| 854-1004, gnl|Hg17|chr4 (144822265-144822415) | |
| 854-1004, gnl|loxAfr1|scaffold_52557 (4470-4650) | |
| 854-1004, gnl|mm7|chr8 (79251218-79251023) | |
| 854-1004, gnl|Mm7|chr8 (79251183-79251033) | |
| 854-1004, gnl|monDom2|scaffold_9 (11945098-11945286) | |
| 854-1004, gnl|oryCun1|scaffold_33617 (1800-1621) | |
| 854-1004, gnl|panTro1|chr3 (162125034-162125221) | |
| 854-1004, gnl|rheMac2|chr5 (135960568-135960755) | |
| 854-1004, gnl|rn3|chr19 (29150095-29150300) | |
| 854-1004, gnl|tetNig1|chr18 (6788896-6789086) | |
| 854-1004, gnl|xenTro1|scaffold_753 (198984-199175) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.143184) | |
| ste (0.135208) | |
| pla (0.133672) |