Non-Coding RNA Search

Ss1.1-Pig4-TMW8029E09.5

Sequence:


               
               GAGACCCCCACCACTGCATCCCTCCGCAGCCCCCTTCCTGCCCCCGGGAGGCACAGCGTG
TGTGCAGCCCCAGAGCACCCCTGCCTCCAGCCCAGCAACTCTCTGCCAAAGCCTGTGGAG
GAGGGGAGAGCCTCTCCCTGCTCACGTCGGTCTCCCCGGGGCTCCTGGCCTTCCTATTTA
TTTTCCCGATGTACTGCTTCTTTCCTTGCGTAAAAGGAGATCGTCCCCTCACCCTTTGGG
CCAATTTACTGGCCACTGATGAACTTCCCTCGCATACCAATCGTGTCATTGGGGGACCTT
CTTCCCCACCCCTGCTGACGCCCCACCTGTCCACCCTGCGGCAGGCAGAGCGAGGCGGGT
GCCAGGAGGTGATGGAATCAGACTCCTCCCCAGCCTCAGCCAGCCTCTGGGATCTGCCAA
CACTCCTCGACCCCAGGGACTCCCAAGCCACTCGGCCGCTCCCCAGGTGGCTCTGCTGTC
CTCACCACACACTCCTCCAGCTTCGGGGAAGACTGAGCGGTTTGGGGAAGCTCCCAGCCC
CGCTGCCGCCACCACCACCACCACTCTTAACCCAGGAGTTGGGAGTTAAAGAGTTGAGGA
GAAACTAAAGCCGAGGTTTTGGCCCCCTGAGGCTAAACTAACCCTGATCCTTAGGGCTAC
CCACACCTCTGGATTCTGGATTCACAGACCAAGTCCAAGCCCGTTCTTATGTCGCCATCA
AGGCCCCCGAACGGCATTCTCGGTACTTCTGTTTGTTTTTGTACATTTTATTAGAAAGGA
CTGTAAAATAGCCACTTAGACACTTTACCTCTTCAGTATGCAAGTGTAAATAAGTTGTAA
TATAGGAAATCTTTTGTTTTAATATAAGAATGAGCCTGTCCAGTTTCTGCTGTACATTAT
TAAAGTTTTATTCACAGAGAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGACCCCCACCACTGCATCCCTCCGCAGCCCCCTTCCTGCCCCCGGGAGGCACAGCGTG
TGTGCAGCCCCAGAGCACCCCTGCCTCCAGCCCAGCAACTCTCTGCCAAAGCCTGTGGAG
GAGGGGAGAGCCTCTCCCTGCTCACGTCGGTCTCCCCGGGGCTCCTGGCCTTCCTATTTA
TTTTCCCGATGTACTGCTTCTTTCCTTGCGTAAAAGGAGATCGTCCCCTCACCCTTTGGG
CCAATTTACTGGCCACTGATGAACTTCCCTCGCATACCAATCGTGTCATTGGGGGACCTT
CTTCCCCACCCCTGCTGACGCCCCACCTGTCCACCCTGCGGCAGGCAGAGCGAGGCGGGT
GCCAGGAGGTGATGGAATCAGACTCCTCCCCAGCCTCAGCCAGCCTCTGGGATCTGCCAA
CACTCCTCGACCCCAGGGACTCCCAAGCCACTCGGCCGCTCCCCAGGTGGCTCTGCTGTC
CTCACCACACACTCCTCCAGCTTCGGGGAAGACTGAGCGGTTTGGGGAAGCTCCCAGCCC
CGCTGCCGCCACCACCACCACCACTCTTAACCCAGGAGTTGGGAGTTAAAGAGTTGAGGA
GAAACTAAAGCCGAGGTTTTGGCCCCCTGAGGCTAAACTAACCCTGATCCTTAGGGCTAC
CCACACCTCTGGATTCTGGATTCACAGACCAAGTCCAAGCCCGTTCTTATGTCGCCATCA
AGGCCCCCGAACGGCATTCTCGGTACTTCTGTTTGTTTTTGTACATTTTATTAGAAAGGA
CTGTAAAATAGCCACTTAGACACTTTACCTCTTCAGTATGCAAGTGTAAATAAGTTGTAA
TATAGGAAATCTTTTGTTTTAATATAAGAATGAGCCTGTCCAGTTTCTGCTGTACATTAT
TAAAGTTTTATTCACAGAGAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               769-934, gnl|bosTau2|chr26 (11070495-11070330)
               

               
               769-934, gnl|Hg17|chr12 (50676986-50677129)
               

               
               769-934, gnl|Mm7|chr15 (101199384-101199526)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               769-934, gnl|bosTau2|chr26 (11070495-11070330)
               

               
               769-934, gnl|Hg17|chr12 (50676986-50677129)
               

               
               769-934, gnl|Mm7|chr15 (101199384-101199526)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               cmu (0.372787)
               

               
               cje (0.330469)
               

               
               nco (0.323468)
               

               
               lun (0.300978)
               

               
               ece (0.229305)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.372787)
               

               
               cje (0.330469)
               

               
               nco (0.323468)
               

               
               lun (0.300978)
               

               
               ece (0.229305)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

	769-934, gnl\|bosTau2\|chr26 (11070495-11070330)
	769-934, gnl\|Hg17\|chr12 (50676986-50677129)
	769-934, gnl\|Mm7\|chr15 (101199384-101199526)

	cmu (0.372787)
	cje (0.330469)
	nco (0.323468)
	lun (0.300978)
	ece (0.229305)
	ute (0.132784)
	kid (0.129735)
	ova (0.129132)
	spc (0.113366)
	nbm (0.0993246)