Non-Coding RNA Search

Ss1.1-Pig4-TMW8029E16.5

Sequence:


               
               GCGTCACGTGGCTGAGCAGCGAGCGTCTCGGGCTCGGAGCCGCTGGCCGCCGGGCATGGA
CCCTCTCACCGCTGGGGCCCAAGCGTTGGGGGCCGCGGAGCCGCCGCGGGGCCGGCCGCA
GCTGAGCGCGCGGGAGGCGTCCCCCGCCCCGGGGGCTGCCTTTGTGCTGGCTGACCACTC
TGGTCAGGAGAGAGAGACTGAGAAGGCCATGGATCGACTAGCCACTGGAGCCCAGAGCAT
CCCTAACGATAGTCCTGCCCGTGGTGAGAGCATCCATTCTGAAGAGGAAGGCTTTGCTGT
GGATGATGAGGACTCTGATGGGGACCTGAATACATGGGAGCTGTCAGAAGGGGTGTCCGG
CTGTCCACCCAAGGAGCAGGCTGCCGACCTTTTTAACGAGGACTGGGACTTGGAGTTGAA
AGCAGATCAAGGGAATCCATATGATGCCGACGACATCCAGGGTTGCCTTTCTCAAGAGGT
CAGACCTTGGGTGTGCTGTGCCCCACAAGGAGACATGATCTATGACCCCAGTTGGCACCA
CCCGCCTCCACTGATACCCCATTATTCCAAGATGGTCTTTGAAACGGGACAGTTTGATGA
TGCCGAAGACTGAGGGTGCCGCCCTGGCCTGGTGGGCGGGCGGGCCTTCCAGGTCAAGGT
CTCCTTCTTTTGAGGTGAGATGTCACATCCGAGGAGACATTCCCAGTGATCCCCAAGCTG
GGCACACAGACTGGTGTTAAGTAAGGTCTGCCGCCCCCTGTTCTGTTGTTGTTGTTGTTG
TTTTTAATGAGCTTCTCCCAGGTATGTGTGTGTACGTCTCTGTTGGGAGAGGAGTAGAAA
ACTTTATAAATAAAGGTAGGAAATGATCAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGTCACGTGGCTGAGCAGCGAGCGTCTCGGGCTCGGAGCCGCTGGCCGCCGGGCATGGA
CCCTCTCACCGCTGGGGCCCAAGCGTTGGGGGCCGCGGAGCCGCCGCGGGGCCGGCCGCA
GCTGAGCGCGCGGGAGGCGTCCCCCGCCCCGGGGGCTGCCTTTGTGCTGGCTGACCACTC
TGGTCAGGAGAGAGAGACTGAGAAGGCCATGGATCGACTAGCCACTGGAGCCCAGAGCAT
CCCTAACGATAGTCCTGCCCGTGGTGAGAGCATCCATTCTGAAGAGGAAGGCTTTGCTGT
GGATGATGAGGACTCTGATGGGGACCTGAATACATGGGAGCTGTCAGAAGGGGTGTCCGG
CTGTCCACCCAAGGAGCAGGCTGCCGACCTTTTTAACGAGGACTGGGACTTGGAGTTGAA
AGCAGATCAAGGGAATCCATATGATGCCGACGACATCCAGGGTTGCCTTTCTCAAGAGGT
CAGACCTTGGGTGTGCTGTGCCCCACAAGGAGACATGATCTATGACCCCAGTTGGCACCA
CCCGCCTCCACTGATACCCCATTATTCCAAGATGGTCTTTGAAACGGGACAGTTTGATGA
TGCCGAAGACTGAGGGTGCCGCCCTGGCCTGGTGGGCGGGCGGGCCTTCCAGGTCAAGGT
CTCCTTCTTTTGAGGTGAGATGTCACATCCGAGGAGACATTCCCAGTGATCCCCAAGCTG
GGCACACAGACTGGTGTTAAGTAAGGTCTGCCGCCCCCTGTTCTGTTGTTGTTGTTGTTG
TTTTTAATGAGCTTCTCCCAGGTATGTGTGTGTACGTCTCTGTTGGGAGAGGAGTAGAAA
ACTTTATAAATAAAGGTAGGAAATGATCAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|57091267|ref|XP_537737.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57091267|ref|XP_537737.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-155, gnl|bosTau2|chr19 (10258297-10258147)
               

               
               1-155, gnl|Hg17|chr17 (27210381-27210232)
               

               
               1-155, gnl|Mm7|chr11 (80013012-80012884)
               


               
               443-863, gnl|bosTau2|chr19 (10254182-10253761)
               

               
               443-863, gnl|Hg17|chr17 (27203441-27203005)
               

               
               443-863, gnl|Mm7|chr8 (13859422-13859019)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-155, gnl|bosTau2|chr19 (10258297-10258147)
               

               
               1-155, gnl|Hg17|chr17 (27210381-27210232)
               

               
               1-155, gnl|Mm7|chr11 (80013012-80012884)
               


               
               443-863, gnl|bosTau2|chr19 (10254182-10253761)
               

               
               443-863, gnl|Hg17|chr17 (27203441-27203005)
               

               
               443-863, gnl|Mm7|chr8 (13859422-13859019)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               fhi (0.508733)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)

Expressed library(ies): 10 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.508733)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)

	1-155, gnl\|bosTau2\|chr19 (10258297-10258147)
	1-155, gnl\|Hg17\|chr17 (27210381-27210232)
	1-155, gnl\|Mm7\|chr11 (80013012-80012884)

	443-863, gnl\|bosTau2\|chr19 (10254182-10253761)
	443-863, gnl\|Hg17\|chr17 (27203441-27203005)
	443-863, gnl\|Mm7\|chr8 (13859422-13859019)

	fhi (0.508733)
	mgm (0.180343)
	sto (0.179824)
	fbs (0.175346)
	lin (0.145603)
	hyp (0.142837)
	pla (0.133672)
	ute (0.132784)
	ova (0.129132)
	pgl (0.118483)