Non-Coding RNA Search

Ss1.1-Pig4-TMW8029E17.5

Sequence:


               
               AAATATACCTTCAGGCAAATTATCTGACCACCTCCATTATGTCATTACCTCCAGAAGAAT
GGAATAGGGGAGGTATGACCTAGTGGGGTGTAGACACCCCTGGTCCTTTCTTCATACCCT
CAGCTCTCTCTTTCCCAAACCGTCTTCCTGCTGGTCCCTAACTCAGAGTGGGATGCAGCA
AGGTAGCAGCTGTGGCAGTGGGAGTTGTGCCAGAACCAGTTGCCAGTTGGAACTTGCATA
GGACAGGGTAAAGTCCAAAGAGCTGAGCCTGTAGTTATGCTGTAATGATAGTGCTCAGGT
AGTGCCTTGAGTCAGGATATAGTGCCATGGCCATGAAGAATTCCAAATTTCAGTCCTTAC
TACAAAAGTTCAGTGGTCGCTGGTCCATTTTGCAGCACATGCATGAGTTACTTTTTTCCC
TCTACATCAGAACTGTCACAAGCAAAATGTTTCATAAAACAAGATGGCAACGTGCTAACA
AAAAATGCACAATAAAAACAGTATCCTCTTAGACATGTCATAGCAAGAGTTTATTTTTTA
TCTCTGCACTGGTGGTTGGAAGTAAACTTTTTCTTGACCATGGCAGTGTTCTGGCTCCAG
ACAGTGGAGAGTCCAAATAATTGTTCTGTCGTAGTTTGGCAGAAAATGCCCATTTCAGAT
GTTTTTGAGATTCTAAAGGATAGCTCATGATATGTACTGCAGCTTCTTGTGTCTGTTTTG
GAATTCTGGGATACCCATGGGCCCTCTCTCTAGGAATGCTGGACTTCTAGGACATTCTGA
GGATTGTCAGTACATATAAACTTTTCAACCCTATTATGCAGTCTTATTTGTAATTGTAAA
CTTTAAAAAAATATGGTTAATAACATTCAGCCTGTTTCTTAAAGCTTAAAAAAAAACTTC
AGTGAATGTTTTTATTTTTAAACAAGATTTGTGAATTGAATATCATGAACCGTGTTTTGA
TATCCCTTTTTCACATTGTGCCAATGGAAGGGGGTGTTTGATATTTCTTTATATGTCAAG
GAGATGCTTCAAAATGTCAATTGCTTTAAACTTAAAATTACCTCTCAAGAGACCAAGGTA
CATTTACCTCATTGTATATATGATGTTTAATATTTGTCAGAGCATTCTCCAGGTTTGCAG
TTTTAGTTCTATAAAGTATGAGTATTATGTTGCTAAATTACTCAAATGGTACTGTATTGT
TTATATTTGTACCCCCAATAACATCTATACTGTCTGTTTTCTGTATTTTATTGTATTTGT
GCAAAACTCTTTTGGCTTTATCACTATAACTTCTGTTCTTTAAGATGTGTACAGAAAATG
TCCCTATAAATTTTCATTTAATAAGTTGGATGACTTTGAGAAACCTGTAGAGGAAAGAAT
AACAAAAACTGCAGTTCCCCATAAGTTTTTTTAAATTGTATATTGTATTTGTAGTAATAT
TCTGAATGAACTGTAAATAGGAAGTAGAAGAATAATGCTTATGTCAAGTCCTAACACTAC
AGTAGAAAAATGGAAGTAATACAAATAAATTACTTTTTTCCCAAAAAAAAAAAAAAAAAA
TTGAAGTGTATATATTGAAATGAGCCATGCTATTGTGAAATGTTGCTACTGTAAATAAAT
AGAGACCAGAATCTTGACTAGCCAGCACAAGTTACAGTATTAAAATATGTGTGAGGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATATACCTTCAGGCAAATTATCTGACCACCTCCATTATGTCATTACCTCCAGAAGAAT
GGAATAGGGGAGGTATGACCTAGTGGGGTGTAGACACCCCTGGTCCTTTCTTCATACCCT
CAGCTCTCTCTTTCCCAAACCGTCTTCCTGCTGGTCCCTAACTCAGAGTGGGATGCAGCA
AGGTAGCAGCTGTGGCAGTGGGAGTTGTGCCAGAACCAGTTGCCAGTTGGAACTTGCATA
GGACAGGGTAAAGTCCAAAGAGCTGAGCCTGTAGTTATGCTGTAATGATAGTGCTCAGGT
AGTGCCTTGAGTCAGGATATAGTGCCATGGCCATGAAGAATTCCAAATTTCAGTCCTTAC
TACAAAAGTTCAGTGGTCGCTGGTCCATTTTGCAGCACATGCATGAGTTACTTTTTTCCC
TCTACATCAGAACTGTCACAAGCAAAATGTTTCATAAAACAAGATGGCAACGTGCTAACA
AAAAATGCACAATAAAAACAGTATCCTCTTAGACATGTCATAGCAAGAGTTTATTTTTTA
TCTCTGCACTGGTGGTTGGAAGTAAACTTTTTCTTGACCATGGCAGTGTTCTGGCTCCAG
ACAGTGGAGAGTCCAAATAATTGTTCTGTCGTAGTTTGGCAGAAAATGCCCATTTCAGAT
GTTTTTGAGATTCTAAAGGATAGCTCATGATATGTACTGCAGCTTCTTGTGTCTGTTTTG
GAATTCTGGGATACCCATGGGCCCTCTCTCTAGGAATGCTGGACTTCTAGGACATTCTGA
GGATTGTCAGTACATATAAACTTTTCAACCCTATTATGCAGTCTTATTTGTAATTGTAAA
CTTTAAAAAAATATGGTTAATAACATTCAGCCTGTTTCTTAAAGCTTAAAAAAAAACTTC
AGTGAATGTTTTTATTTTTAAACAAGATTTGTGAATTGAATATCATGAACCGTGTTTTGA
TATCCCTTTTTCACATTGTGCCAATGGAAGGGGGTGTTTGATATTTCTTTATATGTCAAG
GAGATGCTTCAAAATGTCAATTGCTTTAAACTTAAAATTACCTCTCAAGAGACCAAGGTA
CATTTACCTCATTGTATATATGATGTTTAATATTTGTCAGAGCATTCTCCAGGTTTGCAG
TTTTAGTTCTATAAAGTATGAGTATTATGTTGCTAAATTACTCAAATGGTACTGTATTGT
TTATATTTGTACCCCCAATAACATCTATACTGTCTGTTTTCTGTATTTTATTGTATTTGT
GCAAAACTCTTTTGGCTTTATCACTATAACTTCTGTTCTTTAAGATGTGTACAGAAAATG
TCCCTATAAATTTTCATTTAATAAGTTGGATGACTTTGAGAAACCTGTAGAGGAAAGAAT
AACAAAAACTGCAGTTCCCCATAAGTTTTTTTAAATTGTATATTGTATTTGTAGTAATAT
TCTGAATGAACTGTAAATAGGAAGTAGAAGAATAATGCTTATGTCAAGTCCTAACACTAC
AGTAGAAAAATGGAAGTAATACAAATAAATTACTTTTTTCCCAAAAAAAAAAAAAAAAAA
TTGAAGTGTATATATTGAAATGAGCCATGCTATTGTGAAATGTTGCTACTGTAAATAAAT
AGAGACCAGAATCTTGACTAGCCAGCACAAGTTACAGTATTAAAATATGTGTGAGGAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1310-1554, gnl|bosTau2|chr1 (39283271-39283514)
               

               
               1310-1554, gnl|Hg17|chr9 (98995254-98995486)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1310-1554, gnl|bosTau2|chr1 (39283271-39283514)
               

               
               1310-1554, gnl|Hg17|chr9 (98995254-98995486)

Expressed library(ies): 24 entry(ies)

More info

Expressed library(ies): 24 entry(ies)

Help | Less info


               
               liv (0.731422)
               

               
               bfe (0.299715)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               jca (0.22792)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.731422)
               

               
               bfe (0.299715)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               jca (0.22792)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	1310-1554, gnl\|bosTau2\|chr1 (39283271-39283514)
	1310-1554, gnl\|Hg17\|chr9 (98995254-98995486)

	liv (0.731422)
	bfe (0.299715)
	lin (0.291206)
	spl (0.286369)
	jca (0.22792)
	mas (0.210305)
	cty (0.20816)
	aor (0.195274)
	col (0.195008)
	fty (0.17584)
	fbs (0.175346)
	mcp (0.170648)
	fco (0.157208)
	tbr (0.154178)
	lnt (0.142308)
	csk (0.140746)
	lyg (0.133103)
	nmm (0.132802)
	bla (0.124347)
	tra (0.123092)
	ebs (0.118301)
	cbl (0.114797)
	eje (0.0988338)
	ldo (0.0970026)