Non-Coding RNA Search

Ss1.1-Pig4-TMW8029F02.5

Sequence:


               
               GGCCAAGGAGATCCAGCTGATGCACCGAGCGCCCGTGGTGGGCATCCTGGTGCTGGATGG
ACACAGTGTGCCCCTTCCCGAGCCCCTGGAAGTGGCTCACGACCTGTCAAAGAGCCCGGA
CATGCAAGGAAGCCACCAGCTGCTCGTGGTGTCGGAGGAGCAGTTTAAGGTGTTCACGCT
GCCCAAGGTCAGCGCCAGGCTGAAGCTGAAGCTGACCGCCCTGGAGGGCTCGCGGGTGCG
GCGGGTCAGCGCAGCCCGCTTCGGCAGCTGTCGAGCCGAGGACTACGGGGAGCACCACCT
GGCCGTCCTCACCAACCTGGGCGACGTCCAGGTGGTCTCGCTGCCCCTGCTCAAGCCCCA
GGTGCGTTACAGCTGCATCCGCCGGGAGGACGTCAGCGGCATCGCCTCGTGCGTCTTCAC
CAAATATGGCCAAGGTTTCTACCTGATCTCACCCTCCGAGTTTGAGCGCTTCTCTCTCTC
CACCAAGTGGCTGGTTGAGCCCCGGTGTCTGGTGGATTCAGCAGAACCGAAGAACCACGG
CCGGCCCCGCAACGGATCGGGCCCTGAGACGGCCTTGAGCCAAGCCAGGAACTCAGGGAG
CCAGAGTGACGGAGACGAGAGGAGGTCTGGCCCAGTCATGGAACACGCGCTGCTCAATGA
TGAGAGGGTCCTGAAGGAGATCCAGAGCACCTTGGAGGGAGCCCGGGGCGGAGTGAGCCG
GACGCGCATCCAGGCTGCACAATGAACACACACTACTGAGGGCTCTTCTCAGGCACTGGG
CCGTGCGGGGGCCGGGGGCTCCCCCAGTTTCCACCCTGCTGCTGCTCCTGGCCTCGGGAG
AAGAGGGACCCTGGGCCCCGGGGGCTGTCCCTCCCCGGGGCCTCGACTGTCTCAGTCCTT
TCTCAATGTTGCACAGTTTTTAACCCCTCCGCCCCCTTTTTTTGTAGTAGGCTGGATTTT
AAATTATAAATGTAAACTGCCTCCGGGCGAAAAAGAGTTTTTAATAAACACCTTATTACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCAAGGAGATCCAGCTGATGCACCGAGCGCCCGTGGTGGGCATCCTGGTGCTGGATGG
ACACAGTGTGCCCCTTCCCGAGCCCCTGGAAGTGGCTCACGACCTGTCAAAGAGCCCGGA
CATGCAAGGAAGCCACCAGCTGCTCGTGGTGTCGGAGGAGCAGTTTAAGGTGTTCACGCT
GCCCAAGGTCAGCGCCAGGCTGAAGCTGAAGCTGACCGCCCTGGAGGGCTCGCGGGTGCG
GCGGGTCAGCGCAGCCCGCTTCGGCAGCTGTCGAGCCGAGGACTACGGGGAGCACCACCT
GGCCGTCCTCACCAACCTGGGCGACGTCCAGGTGGTCTCGCTGCCCCTGCTCAAGCCCCA
GGTGCGTTACAGCTGCATCCGCCGGGAGGACGTCAGCGGCATCGCCTCGTGCGTCTTCAC
CAAATATGGCCAAGGTTTCTACCTGATCTCACCCTCCGAGTTTGAGCGCTTCTCTCTCTC
CACCAAGTGGCTGGTTGAGCCCCGGTGTCTGGTGGATTCAGCAGAACCGAAGAACCACGG
CCGGCCCCGCAACGGATCGGGCCCTGAGACGGCCTTGAGCCAAGCCAGGAACTCAGGGAG
CCAGAGTGACGGAGACGAGAGGAGGTCTGGCCCAGTCATGGAACACGCGCTGCTCAATGA
TGAGAGGGTCCTGAAGGAGATCCAGAGCACCTTGGAGGGAGCCCGGGGCGGAGTGAGCCG
GACGCGCATCCAGGCTGCACAATGAACACACACTACTGAGGGCTCTTCTCAGGCACTGGG
CCGTGCGGGGGCCGGGGGCTCCCCCAGTTTCCACCCTGCTGCTGCTCCTGGCCTCGGGAG
AAGAGGGACCCTGGGCCCCGGGGGCTGTCCCTCCCCGGGGCCTCGACTGTCTCAGTCCTT
TCTCAATGTTGCACAGTTTTTAACCCCTCCGCCCCCTTTTTTTGTAGTAGGCTGGATTTT
AAATTATAAATGTAAACTGCCTCCGGGCGAAAAAGAGTTTTTAATAAACACCTTATTACC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26347601|dbj|BAC37449.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26347601|dbj|BAC37449.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               247-406, + strand, RNAz p=0.856111
               

               
               812-922, - strand, RNAz p=0.992185

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               247-406, + strand, RNAz p=0.856111
               

               
               812-922, - strand, RNAz p=0.992185

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               168-436, gnl|bosTau2|chr19 (51524878-51524610)
               

               
               168-436, gnl|Hg17|chr17 (71080688-71080956)
               

               
               168-436, gnl|Mm7|chr11 (115962760-115963028)
               


               
               773-1020, gnl|bosTau2|chr19 (51523027-51522779)
               

               
               773-1020, gnl|Hg17|chr17 (71082640-71082879)
               

               
               773-1020, gnl|Mm7|chr11 (115964577-115964813)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               168-436, gnl|bosTau2|chr19 (51524878-51524610)
               

               
               168-436, gnl|Hg17|chr17 (71080688-71080956)
               

               
               168-436, gnl|Mm7|chr11 (115962760-115963028)
               


               
               773-1020, gnl|bosTau2|chr19 (51523027-51522779)
               

               
               773-1020, gnl|Hg17|chr17 (71082640-71082879)
               

               
               773-1020, gnl|Mm7|chr11 (115964577-115964813)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ute (0.132784)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.132784)

	247-406, + strand, RNAz p=0.856111
	812-922, - strand, RNAz p=0.992185

	168-436, gnl\|bosTau2\|chr19 (51524878-51524610)
	168-436, gnl\|Hg17\|chr17 (71080688-71080956)
	168-436, gnl\|Mm7\|chr11 (115962760-115963028)

	773-1020, gnl\|bosTau2\|chr19 (51523027-51522779)
	773-1020, gnl\|Hg17\|chr17 (71082640-71082879)
	773-1020, gnl\|Mm7\|chr11 (115964577-115964813)