Non-Coding RNA Search

Ss1.1-Pig4-TMW8029F24.3

Sequence:


               
               CTCGCTGTCAGGCATGGAGATGTTTTCACTTTGGCTTTCTGCCCTTGGGGAGTCTTCCCT
TAAATCAAGTCCAAAGTCCAAGGGGCAGGTGGCCAGATGGTCAGATGTCCTGCCCAGTGA
GGCCAGGAGCCAAAGGAGCCATGCCCAGCCTCGCCAAGGACAGCCCTTCTCTCTGGGGTG
ACGAGGAGGCAAGGAGGTCCCAGCCCAGGCGGAGCCCACGCCGGAGCTTCCCAGCTTCCC
AACTTCCTCCCTTTGCTAACCTCAGGGTTTCTGGCACACGTGGAAAGCTGAGAGATTTTT
CCAGCCCTCAGCGAGAGGATGTGTCACTTCATTGAATGGATGGACATCAGTGCCTTCCCT
TTACCCATCCTTAGGCCAGAGGGGCCAGACACTAAGTGGAAAGACATAGCTGAGAACACA
AAGAACTTTTCTGTGCGTAATTCTCAAAAGACAAGCCCACTAGACTAAGTCGGATGATTG
TGCGATTTGACGATGGAACAGGAAAACTTGCATTAAAAATGTCCTTATTCATTTGAACAG
GTTGTGTAGAATAGCTTCACATTACAATGAATTTTTCTTACTTTTAGTATATAGACTTAG
GCAAGTCTGAGTCTGTGTTGCTTCACTGATTTCCAGTTTGGAGCCAGGTTATTGTGATTG
AAATGAGCAACACAAGAAGGCTCAGCAGGCGCTCTGGGGATGGCTCCTCTGGGCAGAGCC
ATTGGCGATGCAGAAAACCTCAAGACACGGTTTTTGGCAAAAATCCCATGACTTTCAACT
AGTTATTTTACTCTTGACCTTTCACCAAGACAGAATATTTTCCTTGAAACGGAGTTAGCT
TATCCTTTTTGCCTTTGCAGCTTAGAGGCGAGACAGTAGTGCCTTGCATTATGCAGAGTA
AACCCTCATTCAAAAAATAAAAAGTCATTCTGGAGACCACAAGGATAAGATTTCAGTTTG
TCCAAAAGCTTTGTAAAGAGGCTGAGTGTGAAGAACTGCAGGTCTTCAGGCTCCATCCTC
TACTTTTTATTACAGAGATTCTCTGGTCTGGTTTTGTAACCCTCAGATCAGAGACAGTAA
GTGCAAAGAGTTCCACAGTTCTCCCAGACCAGTGACTTTATTTCTTGATGAAAACTGCCA
AGTGGTACATGCTGCATAGCGATTCTAGGGTGGGGAAGAGAAGGACAGCCCTGCCTAAAA
GAATGATACAATTTCTGAGGTTAAAAAAAGGTGGCTACGTGGGCCTTCTTCCTTCACCAT
AAACAAATGTGTTTTATGATTTGCCTTTGGCAGTCTGCAACGTCAATGAAGAAATCTACA
CTGTGGATTGATTTCTCTGTCACTATTTAAAGAAAATAAACCTAAAACACTTTGTAACCA
CATATTTACCCTGCCAAGTGCCTATATTGCAATAAAATGTTTGTCCTTGAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGCTGTCAGGCATGGAGATGTTTTCACTTTGGCTTTCTGCCCTTGGGGAGTCTTCCCT
TAAATCAAGTCCAAAGTCCAAGGGGCAGGTGGCCAGATGGTCAGATGTCCTGCCCAGTGA
GGCCAGGAGCCAAAGGAGCCATGCCCAGCCTCGCCAAGGACAGCCCTTCTCTCTGGGGTG
ACGAGGAGGCAAGGAGGTCCCAGCCCAGGCGGAGCCCACGCCGGAGCTTCCCAGCTTCCC
AACTTCCTCCCTTTGCTAACCTCAGGGTTTCTGGCACACGTGGAAAGCTGAGAGATTTTT
CCAGCCCTCAGCGAGAGGATGTGTCACTTCATTGAATGGATGGACATCAGTGCCTTCCCT
TTACCCATCCTTAGGCCAGAGGGGCCAGACACTAAGTGGAAAGACATAGCTGAGAACACA
AAGAACTTTTCTGTGCGTAATTCTCAAAAGACAAGCCCACTAGACTAAGTCGGATGATTG
TGCGATTTGACGATGGAACAGGAAAACTTGCATTAAAAATGTCCTTATTCATTTGAACAG
GTTGTGTAGAATAGCTTCACATTACAATGAATTTTTCTTACTTTTAGTATATAGACTTAG
GCAAGTCTGAGTCTGTGTTGCTTCACTGATTTCCAGTTTGGAGCCAGGTTATTGTGATTG
AAATGAGCAACACAAGAAGGCTCAGCAGGCGCTCTGGGGATGGCTCCTCTGGGCAGAGCC
ATTGGCGATGCAGAAAACCTCAAGACACGGTTTTTGGCAAAAATCCCATGACTTTCAACT
AGTTATTTTACTCTTGACCTTTCACCAAGACAGAATATTTTCCTTGAAACGGAGTTAGCT
TATCCTTTTTGCCTTTGCAGCTTAGAGGCGAGACAGTAGTGCCTTGCATTATGCAGAGTA
AACCCTCATTCAAAAAATAAAAAGTCATTCTGGAGACCACAAGGATAAGATTTCAGTTTG
TCCAAAAGCTTTGTAAAGAGGCTGAGTGTGAAGAACTGCAGGTCTTCAGGCTCCATCCTC
TACTTTTTATTACAGAGATTCTCTGGTCTGGTTTTGTAACCCTCAGATCAGAGACAGTAA
GTGCAAAGAGTTCCACAGTTCTCCCAGACCAGTGACTTTATTTCTTGATGAAAACTGCCA
AGTGGTACATGCTGCATAGCGATTCTAGGGTGGGGAAGAGAAGGACAGCCCTGCCTAAAA
GAATGATACAATTTCTGAGGTTAAAAAAAGGTGGCTACGTGGGCCTTCTTCCTTCACCAT
AAACAAATGTGTTTTATGATTTGCCTTTGGCAGTCTGCAACGTCAATGAAGAAATCTACA
CTGTGGATTGATTTCTCTGTCACTATTTAAAGAAAATAAACCTAAAACACTTTGTAACCA
CATATTTACCCTGCCAAGTGCCTATATTGCAATAAAATGTTTGTCCTTGAAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               79-192, - strand, RNAz p=0.76978
               

               
               906-1057, - strand, RNAz p=0.755129

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-192, - strand, RNAz p=0.76978
               

               
               906-1057, - strand, RNAz p=0.755129

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1434, gnl|bosTau2|chrX (46878431-46879823)
               

               
               1-1434, gnl|Hg17|chr1 (181493476-181491820)
               

               
               1-1434, gnl|Mm7|chr1 (151653999-151655436)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1434, gnl|bosTau2|chrX (46878431-46879823)
               

               
               1-1434, gnl|Hg17|chr1 (181493476-181491820)
               

               
               1-1434, gnl|Mm7|chr1 (151653999-151655436)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               aor (0.585823)
               

               
               gul (0.532765)
               

               
               spl (0.286369)
               

               
               csk (0.281492)
               

               
               lyg (0.266205)
               

               
               cmu (0.186393)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               fat (0.147427)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.585823)
               

               
               gul (0.532765)
               

               
               spl (0.286369)
               

               
               csk (0.281492)
               

               
               lyg (0.266205)
               

               
               cmu (0.186393)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               fat (0.147427)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	79-192, - strand, RNAz p=0.76978
	906-1057, - strand, RNAz p=0.755129

	1-1434, gnl\|bosTau2\|chrX (46878431-46879823)
	1-1434, gnl\|Hg17\|chr1 (181493476-181491820)
	1-1434, gnl\|Mm7\|chr1 (151653999-151655436)

	aor (0.585823)
	gul (0.532765)
	spl (0.286369)
	csk (0.281492)
	lyg (0.266205)
	cmu (0.186393)
	eye (0.170503)
	cki (0.165235)
	fat (0.147427)
	che (0.136314)
	ssp (0.13552)
	pla (0.133672)
	sug (0.127291)
	ese (0.126502)
	bla (0.124347)
	cly (0.120642)
	eru (0.120048)
	cbl (0.114797)
	jca (0.11396)
	cty (0.10408)