Non-Coding RNA Search

Ss1.1-Pig4-TMW8029G02.3

Sequence:


               
               CTCTCTGCCCACTCAGCCACCTCAGCCATCATCTTCCACTTATGACCCAGGCAACATGCC
ATCGAGCAGCTATACTGGAATACAGATTCCTCCCGGTGCCCATGCTCCAGCTAATACCCC
AGCAGAGGTGCCTCACAGCACAGGTGTAACAAGTAACACTATCCAGCCTACTCCACCGGG
ATCAATTCCTGCCATTGATCCCGCACTTTTCAGTACAGTTTCCCAGGGAGATATCCGACT
AACACCGGAGGACTTTGCTAGGGCTCAGAAATACTGCAAATATGCTGGCAGTGCTTTGCA
GTATGAAGATGTCAGCACTGCTGTGCAGAATCTGCAGAAGGCCCTCAAGTTACTGACTAC
AGGCAGAGAATGAAGCCTTTGTGCAACAGATCCATGCATTTTTGGCTTAAAGAACTAACA
GTCCATTACTCTATCTTCAGCCTCTCAGGGGCACAGTTTTAAGGAAGACTTCAGTTCCAT
GACTATAACAATGAAATCTGTGTCTGTGTATCAGATCCTGTTGAAGCATTCAGCAGCAGC
CTCAACCAGTTTTCATTGTCCACTTAGTGGATCCAGTAATCTCTTGAGTATATAGGGTTG
ATGTGAGCAAGATCCTAAAAACGCCCATTGAACCCTGCTTCTTCAAAAAAATGAAAACAT
GCTTCTAGTAAATGTATTGGGAATTAGCTTTGTATCTTAATCTACATAAATTAAGGAATT
TTTTCATCTATAATTTGAACAAACAGACCTTATTACTTTGTCATAAAATACTAAATTTAA
CTTTTAATAAAGATTGCCAGAATATTCTAGATTAGAGCATGTTTTTGTTTTCCTCAGGAC
TTACAAAACAGATACGAATGTCATAAACTGTTAGATGAATCACAAGATTATGTTCAAATT
TCAATTTATATTCGTATTAAATATAGCTACGTTAAAAGTCAGATTGTTCATGGAAGGGAA
TAAAATAAGGTAAAGAGGGAGAATCAAATTTAGACTTAGGAATAATGTTGGTTTCCCAGC
TGTTTTCCCTATCCATTGATGCTTAAGGTGAATTGGTATTTGCTTCATAGGCAGTTTGAC
TGCATGTATTAGAGAATGAAAACAAAATGTTTGTAGTAATGCCTGGAAACTTGGTGCTTT
GAGTTAAGGTTCTCCTCTGCTGCTATGGAATGGATTCCATAGAATGTATGTCTTTGAATG
ATGCAAAAGATTATAAGAAAATTAATTCTCAGTTGTTAAGTTTATAAGTTTTGTGGGAAA
TTATGGACTTACTCTGTCACCTTCATTTGTGCTGTGTAAAAAATAAATATAAGCATTCTT
TTAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTCTGCCCACTCAGCCACCTCAGCCATCATCTTCCACTTATGACCCAGGCAACATGCC
ATCGAGCAGCTATACTGGAATACAGATTCCTCCCGGTGCCCATGCTCCAGCTAATACCCC
AGCAGAGGTGCCTCACAGCACAGGTGTAACAAGTAACACTATCCAGCCTACTCCACCGGG
ATCAATTCCTGCCATTGATCCCGCACTTTTCAGTACAGTTTCCCAGGGAGATATCCGACT
AACACCGGAGGACTTTGCTAGGGCTCAGAAATACTGCAAATATGCTGGCAGTGCTTTGCA
GTATGAAGATGTCAGCACTGCTGTGCAGAATCTGCAGAAGGCCCTCAAGTTACTGACTAC
AGGCAGAGAATGAAGCCTTTGTGCAACAGATCCATGCATTTTTGGCTTAAAGAACTAACA
GTCCATTACTCTATCTTCAGCCTCTCAGGGGCACAGTTTTAAGGAAGACTTCAGTTCCAT
GACTATAACAATGAAATCTGTGTCTGTGTATCAGATCCTGTTGAAGCATTCAGCAGCAGC
CTCAACCAGTTTTCATTGTCCACTTAGTGGATCCAGTAATCTCTTGAGTATATAGGGTTG
ATGTGAGCAAGATCCTAAAAACGCCCATTGAACCCTGCTTCTTCAAAAAAATGAAAACAT
GCTTCTAGTAAATGTATTGGGAATTAGCTTTGTATCTTAATCTACATAAATTAAGGAATT
TTTTCATCTATAATTTGAACAAACAGACCTTATTACTTTGTCATAAAATACTAAATTTAA
CTTTTAATAAAGATTGCCAGAATATTCTAGATTAGAGCATGTTTTTGTTTTCCTCAGGAC
TTACAAAACAGATACGAATGTCATAAACTGTTAGATGAATCACAAGATTATGTTCAAATT
TCAATTTATATTCGTATTAAATATAGCTACGTTAAAAGTCAGATTGTTCATGGAAGGGAA
TAAAATAAGGTAAAGAGGGAGAATCAAATTTAGACTTAGGAATAATGTTGGTTTCCCAGC
TGTTTTCCCTATCCATTGATGCTTAAGGTGAATTGGTATTTGCTTCATAGGCAGTTTGAC
TGCATGTATTAGAGAATGAAAACAAAATGTTTGTAGTAATGCCTGGAAACTTGGTGCTTT
GAGTTAAGGTTCTCCTCTGCTGCTATGGAATGGATTCCATAGAATGTATGTCTTTGAATG
ATGCAAAAGATTATAAGAAAATTAATTCTCAGTTGTTAAGTTTATAAGTTTTGTGGGAAA
TTATGGACTTACTCTGTCACCTTCATTTGTGCTGTGTAAAAAATAAATATAAGCATTCTT
TTAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|62657761|ref|XP_221597.3|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62657761|ref|XP_221597.3|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-116, - strand, RNAz p=0.784724
               

               
               227-385, - strand, RNAz p=0.853292
               

               
               466-583, - strand, RNAz p=0.970748

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-116, - strand, RNAz p=0.784724
               

               
               227-385, - strand, RNAz p=0.853292
               

               
               466-583, - strand, RNAz p=0.970748

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-145, gnl|bosTau2|chr9 (45541606-45541462)
               

               
               1-145, gnl|Hg17|chr6 (142561300-142561447)
               

               
               1-145, gnl|Mm7|chr10 (14370370-14370223)
               


               
               227-1324, gnl|bosTau2|chr9 (45527141-45526049)
               

               
               227-1324, gnl|Hg17|chr6 (142581327-142582420)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-145, gnl|bosTau2|chr9 (45541606-45541462)
               

               
               1-145, gnl|Hg17|chr6 (142561300-142561447)
               

               
               1-145, gnl|Mm7|chr10 (14370370-14370223)
               


               
               227-1324, gnl|bosTau2|chr9 (45527141-45526049)
               

               
               227-1324, gnl|Hg17|chr6 (142581327-142582420)

Expressed library(ies): 28 entry(ies)

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Expressed library(ies): 28 entry(ies)

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               vin (0.665115)
               

               
               fco (0.471624)
               

               
               mgp (0.461361)
               

               
               ova (0.387397)
               

               
               thg (0.380373)
               

               
               mgm (0.360685)
               

               
               sin (0.349895)
               

               
               lin (0.291206)
               

               
               lnt (0.284616)
               

               
               ret (0.257467)
               

               
               ldo (0.194005)
               

               
               sag (0.182715)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

Expressed library(ies): 28 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.665115)
               

               
               fco (0.471624)
               

               
               mgp (0.461361)
               

               
               ova (0.387397)
               

               
               thg (0.380373)
               

               
               mgm (0.360685)
               

               
               sin (0.349895)
               

               
               lin (0.291206)
               

               
               lnt (0.284616)
               

               
               ret (0.257467)
               

               
               ldo (0.194005)
               

               
               sag (0.182715)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

	1-116, - strand, RNAz p=0.784724
	227-385, - strand, RNAz p=0.853292
	466-583, - strand, RNAz p=0.970748

	1-145, gnl\|bosTau2\|chr9 (45541606-45541462)
	1-145, gnl\|Hg17\|chr6 (142561300-142561447)
	1-145, gnl\|Mm7\|chr10 (14370370-14370223)

	227-1324, gnl\|bosTau2\|chr9 (45527141-45526049)
	227-1324, gnl\|Hg17\|chr6 (142581327-142582420)

	vin (0.665115)
	fco (0.471624)
	mgp (0.461361)
	ova (0.387397)
	thg (0.380373)
	mgm (0.360685)
	sin (0.349895)
	lin (0.291206)
	lnt (0.284616)
	ret (0.257467)
	ldo (0.194005)
	sag (0.182715)
	mcp (0.170648)
	fhi (0.169578)
	nco (0.161734)
	mga (0.160205)
	tbr (0.154178)
	isp (0.150376)
	fat (0.147427)
	pla (0.133672)
	nmm (0.132802)
	kid (0.129735)
	tra (0.123092)
	cly (0.120642)
	ebs (0.118301)
	ecc (0.115035)
	jca (0.11396)
	spc (0.113366)