Ss1.1-Pig4-TMW8029G10.3
|
CTTTTAGTAGTCCAAGTATGAGCCCCAGTCATGGAATGAATATCCACAATTTAGCATCAG
GCAAAGGAAGTACTGCACATTTTTCTGGTTTTGAAAGTTGTAGTAATGGTGTAATATCAA
ATAAAGCACATCAATCATATTGCCATAGTAAACACCAGTCATCCAATTTGAATGTTCCAG
AACTGAACAGTATAAACATGTCACGGTCACAGCAGGTTAATAACTTCACCAGTAATGATG
TAGACATGGAGACAGATCACTACTCCAATGGAGTTGGAGAGACTTCATCCAATGGCTTCC
TAAATGGTAGCTCTAAACATGACCACGAAATGGAAGATTGCGACACCGAAATGGAAGTTG
ATTCAAGCCAGTTGAGACGCCAGTTGTGTGGAGGAAGTCAAGCCGCCATAGAAAGAATGA
TTCACTTTGGAAGAGAGCTACAGGCGATGAGTGAACAGCTGAGGAGAGAATGTGGCAAGA
ACACAGCCAATAAAAAAATGTTGAAGGATGCATTTAGTTTACTAGCCTATTCAGATCCTT
GGAACAGCCCAGTTGGAAATCAGCTTGACCCAATTCAGAGAGAACCTGTGTGCTCAGCTC
TTAACAGTGCAATATTAGAAACCCACAATCTGCCAAAGCAACCTCCACTTGCCCTAGCCA
TGGGACAGGCCACACAGTGTCTAGGACTGATGGCTCGATCAGGAATTGGATCCTGTGCTT
TTGCCACAGTGGAAGACTACCTACATTAGCTATGCATTTAAGGAGCTCACATTTATATTG
TGGCATATAGTCAACATGGAAGTAGACCAGCTCTGCTGAATGGAAATTTAGATTTTTTTA
ATTATGTACTGGGGACAGGTTTTTGTCGCTTTACATTGCTTCCTAGTTTACAGCATGATG
CAAATGATTTTCTAACTTAGTGTTAGGAGAAATTATTTTCCATCTTTAACCTCTTAGTTG
TCTAAGAGTTAAATATTACTGAATTTCAGACGTTCAAATTGATCATCACAAATCCTTTAA
AACAATTACCTAAAAGAAACCAAAAAATCCTGCCTTCTTTGTTGTGGGGGGAGACATGGG
GGAGGAAACGGAACAGGTTGTGTTTGTGTTAGCATGTGGGTGATGTAAACTTCAAATTGA
GAGATATTCTGACCCCCGCTCCCATACAAGCATTCAATCAGTGTAACTTGCAAAATGCAT
AAACATCTGACAGTTTGAATTTATAGTGTTGATGGAAGAAATCATTTTTAATGTGTACTG
TACAACTTGAACTACTCAGGAGCTGAGTGAATATGTCTGTTGCTACTTACAATCCCAACC
TGTTAGTCCCAGTAGTTTTGTTTTAACATGGTCTTTTTCAACTTTGTTTCCTGTTTAACT
ACAGATGACTTCTGTTGTAGACTCACAAGTTTAACTGTTGTATTATAACAGTATTACATG
TCAACAGTGTGGTTATGACCTTTATTTATATAAAAACCAAATATTTAGTCAATTTACCGT
GTCTTAATTTAATCTTTGTACACCTTCCATTTTTAAGTGCTTAAATGAGTACTATATTGC
AATAAAAATGTAGTGATATAATTAACCAGCCATTAAAAATTTACTTCTACAAAAAAAAAA
GTCAACTGAGTTTATATATGAGGTACCTGCATACCCATGATTAACATAAAGTTAGAACGA
TTTAAGATGAATGGCTGCTACTGG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTTTTAGTAGTCCAAGTATGAGCCCCAGTCATGGAATGAATATCCACAATTTAGCATCAG
GCAAAGGAAGTACTGCACATTTTTCTGGTTTTGAAAGTTGTAGTAATGGTGTAATATCAA
ATAAAGCACATCAATCATATTGCCATAGTAAACACCAGTCATCCAATTTGAATGTTCCAG
AACTGAACAGTATAAACATGTCACGGTCACAGCAGGTTAATAACTTCACCAGTAATGATG
TAGACATGGAGACAGATCACTACTCCAATGGAGTTGGAGAGACTTCATCCAATGGCTTCC
TAAATGGTAGCTCTAAACATGACCACGAAATGGAAGATTGCGACACCGAAATGGAAGTTG
ATTCAAGCCAGTTGAGACGCCAGTTGTGTGGAGGAAGTCAAGCCGCCATAGAAAGAATGA
TTCACTTTGGAAGAGAGCTACAGGCGATGAGTGAACAGCTGAGGAGAGAATGTGGCAAGA
ACACAGCCAATAAAAAAATGTTGAAGGATGCATTTAGTTTACTAGCCTATTCAGATCCTT
GGAACAGCCCAGTTGGAAATCAGCTTGACCCAATTCAGAGAGAACCTGTGTGCTCAGCTC
TTAACAGTGCAATATTAGAAACCCACAATCTGCCAAAGCAACCTCCACTTGCCCTAGCCA
TGGGACAGGCCACACAGTGTCTAGGACTGATGGCTCGATCAGGAATTGGATCCTGTGCTT
TTGCCACAGTGGAAGACTACCTACATTAGCTATGCATTTAAGGAGCTCACATTTATATTG
TGGCATATAGTCAACATGGAAGTAGACCAGCTCTGCTGAATGGAAATTTAGATTTTTTTA
ATTATGTACTGGGGACAGGTTTTTGTCGCTTTACATTGCTTCCTAGTTTACAGCATGATG
CAAATGATTTTCTAACTTAGTGTTAGGAGAAATTATTTTCCATCTTTAACCTCTTAGTTG
TCTAAGAGTTAAATATTACTGAATTTCAGACGTTCAAATTGATCATCACAAATCCTTTAA
AACAATTACCTAAAAGAAACCAAAAAATCCTGCCTTCTTTGTTGTGGGGGGAGACATGGG
GGAGGAAACGGAACAGGTTGTGTTTGTGTTAGCATGTGGGTGATGTAAACTTCAAATTGA
GAGATATTCTGACCCCCGCTCCCATACAAGCATTCAATCAGTGTAACTTGCAAAATGCAT
AAACATCTGACAGTTTGAATTTATAGTGTTGATGGAAGAAATCATTTTTAATGTGTACTG
TACAACTTGAACTACTCAGGAGCTGAGTGAATATGTCTGTTGCTACTTACAATCCCAACC
TGTTAGTCCCAGTAGTTTTGTTTTAACATGGTCTTTTTCAACTTTGTTTCCTGTTTAACT
ACAGATGACTTCTGTTGTAGACTCACAAGTTTAACTGTTGTATTATAACAGTATTACATG
TCAACAGTGTGGTTATGACCTTTATTTATATAAAAACCAAATATTTAGTCAATTTACCGT
GTCTTAATTTAATCTTTGTACACCTTCCATTTTTAAGTGCTTAAATGAGTACTATATTGC
AATAAAAATGTAGTGATATAATTAACCAGCCATTAAAAATTTACTTCTACAAAAAAAAAA
GTCAACTGAGTTTATATATGAGGTACCTGCATACCCATGATTAACATAAAGTTAGAACGA
TTTAAGATGAATGGCTGCTACTGG
|
|
gi|32822858|gb|AAH54998.1| |
Protein identifier
|
gi|32822858|gb|AAH54998.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
87-238, gnl|bosTau2|chr23 (38913399-38913247) |
|
87-238, gnl|canFam2|chr35 (16090058-16090294) |
|
87-238, gnl|dasNov1|scaffold_11962 (51564-51795) |
|
87-238, gnl|echTel1|scaffold_325025 (84015-83786) |
|
87-238, gnl|galGal2|chr2 (60280134-60280355) |
|
87-238, gnl|hg17|chr6 (13746004-13746234) |
|
87-238, gnl|Hg17|chr6 (13746167-13746011) |
|
87-238, gnl|loxAfr1|scaffold_21566 (21577-21803) |
|
87-238, gnl|mm7|chr13 (42856572-42856809) |
|
87-238, gnl|Mm7|chr13 (42856736-42856579) |
|
87-238, gnl|monDom2|scaffold_3 (101452580-101452805) |
|
87-238, gnl|oryCun1|scaffold_90963 (4752-4959) |
|
87-238, gnl|panTro1|chr5 (14037194-14037424) |
|
87-238, gnl|rheMac2|chr4 (13605154-13605384) |
|
87-238, gnl|rn3|chr17 (27115107-27114875) |
|
87-238, gnl|xenTro1|scaffold_923 (304854-305108) |
| |
|
354-520, gnl|bosTau2|chr23 (38908580-38908416) |
|
354-520, gnl|Hg17|chr6 (13740733-13740569) |
|
354-520, gnl|Mm7|chr13 (42852829-42852665) |
| |
|
617-1702, gnl|bosTau2|chr23 (38898921-38897838) |
|
617-1702, gnl|Hg17|chr6 (13730705-13729618) |
|
617-1702, gnl|Mm7|chr13 (42843957-42842879) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
87-238, gnl|bosTau2|chr23 (38913399-38913247) |
|
87-238, gnl|canFam2|chr35 (16090058-16090294) |
|
87-238, gnl|dasNov1|scaffold_11962 (51564-51795) |
|
87-238, gnl|echTel1|scaffold_325025 (84015-83786) |
|
87-238, gnl|galGal2|chr2 (60280134-60280355) |
|
87-238, gnl|hg17|chr6 (13746004-13746234) |
|
87-238, gnl|Hg17|chr6 (13746167-13746011) |
|
87-238, gnl|loxAfr1|scaffold_21566 (21577-21803) |
|
87-238, gnl|mm7|chr13 (42856572-42856809) |
|
87-238, gnl|Mm7|chr13 (42856736-42856579) |
|
87-238, gnl|monDom2|scaffold_3 (101452580-101452805) |
|
87-238, gnl|oryCun1|scaffold_90963 (4752-4959) |
|
87-238, gnl|panTro1|chr5 (14037194-14037424) |
|
87-238, gnl|rheMac2|chr4 (13605154-13605384) |
|
87-238, gnl|rn3|chr17 (27115107-27114875) |
|
87-238, gnl|xenTro1|scaffold_923 (304854-305108) |
| |
|
354-520, gnl|bosTau2|chr23 (38908580-38908416) |
|
354-520, gnl|Hg17|chr6 (13740733-13740569) |
|
354-520, gnl|Mm7|chr13 (42852829-42852665) |
| |
|
617-1702, gnl|bosTau2|chr23 (38898921-38897838) |
|
617-1702, gnl|Hg17|chr6 (13730705-13729618) |
|
617-1702, gnl|Mm7|chr13 (42843957-42842879) |
|
tes (0.415628) |
|
aor (0.390549) |
|
tra (0.369276) |
|
fbs (0.350693) |
|
mga (0.32041) |
|
ski (0.29347) |
|
csk (0.281492) |
|
lyg (0.266205) |
|
kid (0.259471) |
|
ova (0.258264) |
|
sug (0.254582) |
|
ebs (0.236602) |
|
spc (0.226732) |
|
mgm (0.180343) |
|
ton (0.1755) |
|
rec (0.17307) |
|
mcp (0.170648) |
|
fhi (0.169578) |
|
fco (0.157208) |
|
lin (0.145603) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
ret (0.128733) |
|
bla (0.124347) |
|
jca (0.11396) |
|
ldo (0.0970026) |
|
tes (0.415628) |
|
aor (0.390549) |
|
tra (0.369276) |
|
fbs (0.350693) |
|
mga (0.32041) |
|
ski (0.29347) |
|
csk (0.281492) |
|
lyg (0.266205) |
|
kid (0.259471) |
|
ova (0.258264) |
|
sug (0.254582) |
|
ebs (0.236602) |
|
spc (0.226732) |
|
mgm (0.180343) |
|
ton (0.1755) |
|
rec (0.17307) |
|
mcp (0.170648) |
|
fhi (0.169578) |
|
fco (0.157208) |
|
lin (0.145603) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
ret (0.128733) |
|
bla (0.124347) |
|
jca (0.11396) |
|
ldo (0.0970026) |
