Non-Coding RNA Search

Ss1.1-Pig4-TMW8029G15.3

Sequence:


               
               TGCACAGAACACTATGCATTTTGAAACTTGTTCATCCTGGATTTTTTTTTTTTTTTTTTC
TTTTCATTTGTATCTCAGAACTTAAAGAAATTAGGTGTCTTCTGCATGGACTGTGTGAAA
GAAGATGCTCTGCATATTTGCTGCACTGCATCAGCATCTTACTAAAAATGTGAAATGAAA
GGACTATTGTACACTGAAATGCTTAAATGTATCTGAAAGCACAAGGTGATACTCATTTTT
GATGGTCTTTCCATTTGTGCTGGCTTTTGCCGCTTTGATATATCTGTCATCAGTATTTGG
AGGGTGAGAAGTGAATGTAACAGGTATAAATAACATTTTAAAAACTTAATAGCTTTGCTA
TAATCACCGTTGTTCCAGAGCACTGTCAGATTCATTCTAATGACCAGAAGTGGTTGTTTA
AAAAAGAGAGAAGGAAATAGAACTGTGGGAAAGAAATCTTAGAGGAAAAAAGCATCTCAT
TGTAGGCATTCTTGCCTCATGTATTCCTGGGCCATGTTGTTTCCTGGTACTCATAAATAT
ATGTATTTTATTTCCAGATCTCTTTGCCCAAGTTGCTGTTATAAGAGTATTCTGCTGAGT
GTGGATACAGTTAAACACATTAAAGCAGATCTGGAGTCTGAAGTAGCTATAAGCAGCTAT
AAAACAGAAGTATATTCATAGCTGCAAAAACCAGGAGAGGTAGAGGACCTTCCTTTTGGT
TTTTGTTTTGTTTTTTGGTTTTAAAAAGAAGAGATTTTTATTACAGAGAAAAAAATTCCA
GTGAATTGTGCAGAAATACTGGTTTTTACACCATCCTAAAGGAAAACTTATGAGGTTCTG
TTGAAGTAGAGAAGTTGGTATCTTAAATTGCATAAATACAAAAAAGAAAAGAAAAAAACA
TTGAGTGTCAAAGTTCTAAAAGCAGAACTCATTTTGTGCAATGAACATAAGGAAAGACTA
CTGTATAGGTTTTTTTTGGGGGGGGTCTTTGGGTTTTTTTCTCTTTTAAATGAAGAAAAG
CTTTGCTTAAGGGTTGCATACTTTTATTGGAGTAAATCTGAATGATCCTACTCCTTTGGA
GTAAAACTTAGTGCTTACTGGTTTCCAATTGTATTTAGCTTCTGGTTGGAATTTGAATAA
ATGAAAACCTAAATAAAATAGGTGAAAGTTACCTGACTATTCAGGTGAATACACAAAACT
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCACAGAACACTATGCATTTTGAAACTTGTTCATCCTGGATTTTTTTTTTTTTTTTTTC
TTTTCATTTGTATCTCAGAACTTAAAGAAATTAGGTGTCTTCTGCATGGACTGTGTGAAA
GAAGATGCTCTGCATATTTGCTGCACTGCATCAGCATCTTACTAAAAATGTGAAATGAAA
GGACTATTGTACACTGAAATGCTTAAATGTATCTGAAAGCACAAGGTGATACTCATTTTT
GATGGTCTTTCCATTTGTGCTGGCTTTTGCCGCTTTGATATATCTGTCATCAGTATTTGG
AGGGTGAGAAGTGAATGTAACAGGTATAAATAACATTTTAAAAACTTAATAGCTTTGCTA
TAATCACCGTTGTTCCAGAGCACTGTCAGATTCATTCTAATGACCAGAAGTGGTTGTTTA
AAAAAGAGAGAAGGAAATAGAACTGTGGGAAAGAAATCTTAGAGGAAAAAAGCATCTCAT
TGTAGGCATTCTTGCCTCATGTATTCCTGGGCCATGTTGTTTCCTGGTACTCATAAATAT
ATGTATTTTATTTCCAGATCTCTTTGCCCAAGTTGCTGTTATAAGAGTATTCTGCTGAGT
GTGGATACAGTTAAACACATTAAAGCAGATCTGGAGTCTGAAGTAGCTATAAGCAGCTAT
AAAACAGAAGTATATTCATAGCTGCAAAAACCAGGAGAGGTAGAGGACCTTCCTTTTGGT
TTTTGTTTTGTTTTTTGGTTTTAAAAAGAAGAGATTTTTATTACAGAGAAAAAAATTCCA
GTGAATTGTGCAGAAATACTGGTTTTTACACCATCCTAAAGGAAAACTTATGAGGTTCTG
TTGAAGTAGAGAAGTTGGTATCTTAAATTGCATAAATACAAAAAAGAAAAGAAAAAAACA
TTGAGTGTCAAAGTTCTAAAAGCAGAACTCATTTTGTGCAATGAACATAAGGAAAGACTA
CTGTATAGGTTTTTTTTGGGGGGGGTCTTTGGGTTTTTTTCTCTTTTAAATGAAGAAAAG
CTTTGCTTAAGGGTTGCATACTTTTATTGGAGTAAATCTGAATGATCCTACTCCTTTGGA
GTAAAACTTAGTGCTTACTGGTTTCCAATTGTATTTAGCTTCTGGTTGGAATTTGAATAA
ATGAAAACCTAAATAAAATAGGTGAAAGTTACCTGACTATTCAGGTGAATACACAAAACT
AAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               398-737, - strand, RNAz p=0.999076
               

               
               932-1200, + strand, RNAz p=0.99363

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               398-737, - strand, RNAz p=0.999076
               

               
               932-1200, + strand, RNAz p=0.99363

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_030939, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_030939, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1200, gnl|bosTau2|chr23 (26566640-26565486)
               

               
               1-1200, gnl|Hg17|chr6 (24814240-24813065)
               

               
               1-1200, gnl|Mm7|chr13 (24178672-24179816)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1200, gnl|bosTau2|chr23 (26566640-26565486)
               

               
               1-1200, gnl|Hg17|chr6 (24814240-24813065)
               

               
               1-1200, gnl|Mm7|chr13 (24178672-24179816)

Expressed library(ies): 33 entry(ies)

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Expressed library(ies): 33 entry(ies)

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               sag (0.548145)
               

               
               sin (0.524843)
               

               
               mcp (0.511945)
               

               
               mga (0.480615)
               

               
               nms (0.427716)
               

               
               lnt (0.426925)
               

               
               tes (0.415628)
               

               
               hea (0.408998)
               

               
               fcc (0.39557)
               

               
               tra (0.369276)
               

               
               pgl (0.35545)
               

               
               fhi (0.339155)
               

               
               vin (0.332557)
               

               
               nco (0.323468)
               

               
               isp (0.300752)
               

               
               ese (0.253004)
               

               
               med (0.232504)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               eje (0.197668)
               

               
               ldo (0.194005)
               

               
               mgm (0.180343)
               

               
               cut (0.169924)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)

Expressed library(ies): 33 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.548145)
               

               
               sin (0.524843)
               

               
               mcp (0.511945)
               

               
               mga (0.480615)
               

               
               nms (0.427716)
               

               
               lnt (0.426925)
               

               
               tes (0.415628)
               

               
               hea (0.408998)
               

               
               fcc (0.39557)
               

               
               tra (0.369276)
               

               
               pgl (0.35545)
               

               
               fhi (0.339155)
               

               
               vin (0.332557)
               

               
               nco (0.323468)
               

               
               isp (0.300752)
               

               
               ese (0.253004)
               

               
               med (0.232504)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               eje (0.197668)
               

               
               ldo (0.194005)
               

               
               mgm (0.180343)
               

               
               cut (0.169924)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)

	398-737, - strand, RNAz p=0.999076
	932-1200, + strand, RNAz p=0.99363

	1-1200, gnl\|bosTau2\|chr23 (26566640-26565486)
	1-1200, gnl\|Hg17\|chr6 (24814240-24813065)
	1-1200, gnl\|Mm7\|chr13 (24178672-24179816)

	sag (0.548145)
	sin (0.524843)
	mcp (0.511945)
	mga (0.480615)
	nms (0.427716)
	lnt (0.426925)
	tes (0.415628)
	hea (0.408998)
	fcc (0.39557)
	tra (0.369276)
	pgl (0.35545)
	fhi (0.339155)
	vin (0.332557)
	nco (0.323468)
	isp (0.300752)
	ese (0.253004)
	med (0.232504)
	ece (0.229305)
	spc (0.226732)
	eje (0.197668)
	ldo (0.194005)
	mgm (0.180343)
	cut (0.169924)
	fco (0.157208)
	tbr (0.154178)
	ski (0.146735)
	liv (0.146284)
	hyp (0.142837)
	pla (0.133672)
	ret (0.128733)
	ebs (0.118301)
	ecc (0.115035)
	cbl (0.114797)