Non-Coding RNA Search

Ss1.1-Pig4-TMW8029H09.5

Sequence:


               
               AGGAAGGTAGAAGAGGGGAAACAAGGACTTAGGTTTTATATGAATTTCTAAAACTTCTGC
ACTTTGACAGCGGTGGCGAAATACACTAAACCTTACCTTTCTATTGAGAAGAGAGAGAGG
GAAATTATTTTTCCTTTTGATTCCAACCTTTTCTCTCCGTGACAAGGCATAAATCATGGA
CACCAGAAACTAAGGTGGACCTCAGGAATTCTGAAAAGACTGAGAAGCTTATATTCCTCC
TCAGGAGGGAAGGGTAGGGTGTTTTTAGCCCTCTCTGGAACTTAAAACAAAAAACATGAG
TTGCGTGCCATGGAAAGGAGACAAGGCCAAATCTGAATCATTGGAGCTGCCCCAGGCAGC
ACCCCCACAAATCTACCATGAGAAACAGCGCAGGGAGCTTTGTGCTCTGCATGCCCTCAA
TAACGTCTTCCAGGACAGCAATGCCTTCACCCGGGAAACGCTGCAAGAGATTTTCCAGAG
GTTGTCTCCAAACACCATGGTGACCCCCCACAAGAAGAGCATGCTGGGAAATGGGAACTA
CGATGTGAACGTCATTATGGCAGCACTTCAAACCAAAGGCTATGAAGCTGTTTGGTGGGA
CAAGCGCAGGGATGTCGGTGCCATTGCTCTCACTAACGTCATGGGCTTCATCATGAACCT
GCCCTCCAGCCTGTGCTGGGGTCCTCTGAAGTTGCCTCTCAAAAGGCAGCACTGGATCTG
TGTTCGAGAGGTAGGAGGTGCCTACTACAACCTTGACTCCAAACTGAAGATGCCTGAATG
GATTGGAGGCGAAAGCGAGCTCAGGGTTTCATATGTAAGAGACCTGAATCTTGGATGGCT
GGTAAGGAGGTGACATCCCTTTGGATGAGGAGTCCCAGCACCTGTGATGCTGGCTTCTAG
TCTGGTGGGAGTGGCACTGGAACATTTTCTGACGCAGACAACTGTGAAGGATAGCTGCCA
GTCCAGAAGGGAAGCTGAACATTTGGGCCAGAGAGGACTAAACTTCCTTGGGACCAAAGA
AGAAACCTTTTCTTTTTTTTTTTTTTTGTCTTTTCTAGGGCCGCACCCGCAGCATATGGA
GGTTCCCAGGTTAAGGGTTTCTTTTTCTTCTTCCTCTTTTTTTTTTCCCCTCACTATTAA
AAGTCCTTTACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAAGGTAGAAGAGGGGAAACAAGGACTTAGGTTTTATATGAATTTCTAAAACTTCTGC
ACTTTGACAGCGGTGGCGAAATACACTAAACCTTACCTTTCTATTGAGAAGAGAGAGAGG
GAAATTATTTTTCCTTTTGATTCCAACCTTTTCTCTCCGTGACAAGGCATAAATCATGGA
CACCAGAAACTAAGGTGGACCTCAGGAATTCTGAAAAGACTGAGAAGCTTATATTCCTCC
TCAGGAGGGAAGGGTAGGGTGTTTTTAGCCCTCTCTGGAACTTAAAACAAAAAACATGAG
TTGCGTGCCATGGAAAGGAGACAAGGCCAAATCTGAATCATTGGAGCTGCCCCAGGCAGC
ACCCCCACAAATCTACCATGAGAAACAGCGCAGGGAGCTTTGTGCTCTGCATGCCCTCAA
TAACGTCTTCCAGGACAGCAATGCCTTCACCCGGGAAACGCTGCAAGAGATTTTCCAGAG
GTTGTCTCCAAACACCATGGTGACCCCCCACAAGAAGAGCATGCTGGGAAATGGGAACTA
CGATGTGAACGTCATTATGGCAGCACTTCAAACCAAAGGCTATGAAGCTGTTTGGTGGGA
CAAGCGCAGGGATGTCGGTGCCATTGCTCTCACTAACGTCATGGGCTTCATCATGAACCT
GCCCTCCAGCCTGTGCTGGGGTCCTCTGAAGTTGCCTCTCAAAAGGCAGCACTGGATCTG
TGTTCGAGAGGTAGGAGGTGCCTACTACAACCTTGACTCCAAACTGAAGATGCCTGAATG
GATTGGAGGCGAAAGCGAGCTCAGGGTTTCATATGTAAGAGACCTGAATCTTGGATGGCT
GGTAAGGAGGTGACATCCCTTTGGATGAGGAGTCCCAGCACCTGTGATGCTGGCTTCTAG
TCTGGTGGGAGTGGCACTGGAACATTTTCTGACGCAGACAACTGTGAAGGATAGCTGCCA
GTCCAGAAGGGAAGCTGAACATTTGGGCCAGAGAGGACTAAACTTCCTTGGGACCAAAGA
AGAAACCTTTTCTTTTTTTTTTTTTTTGTCTTTTCTAGGGCCGCACCCGCAGCATATGGA
GGTTCCCAGGTTAAGGGTTTCTTTTTCTTCTTCCTCTTTTTTTTTTCCCCTCACTATTAA
AAGTCCTTTACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55661217|ref|XP_515133.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55661217|ref|XP_515133.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               173-692, + strand, RNAz p=0.853325

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               173-692, + strand, RNAz p=0.853325

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_014876, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_014876, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               6-482, gnl|bosTau2|chr5 (67858109-67857631)
               

               
               6-482, gnl|Hg17|chr22 (37420791-37420306)
               

               
               6-482, gnl|Mm7|chr15 (79771367-79770863)
               


               
               533-805, gnl|bosTau2|chr5 (67959710-67959438)
               

               
               533-805, gnl|Hg17|chr16 (68003826-68004403)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-482, gnl|bosTau2|chr5 (67858109-67857631)
               

               
               6-482, gnl|Hg17|chr22 (37420791-37420306)
               

               
               6-482, gnl|Mm7|chr15 (79771367-79770863)
               


               
               533-805, gnl|bosTau2|chr5 (67959710-67959438)
               

               
               533-805, gnl|Hg17|chr16 (68003826-68004403)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	6-482, gnl\|bosTau2\|chr5 (67858109-67857631)
	6-482, gnl\|Hg17\|chr22 (37420791-37420306)
	6-482, gnl\|Mm7\|chr15 (79771367-79770863)

	533-805, gnl\|bosTau2\|chr5 (67959710-67959438)
	533-805, gnl\|Hg17\|chr16 (68003826-68004403)