Non-Coding RNA Search

Ss1.1-Pig4-TMW8029H10.3

Sequence:


               
               CAGGTCCCCGGTTCCTGACTCCCTGAGGATCTGCTTACCCAGCAGGCCCAGGGGGTACGC
AGTCCCTCTGCTCTGTGTCAGGCCCCTGCCAGGCTCCCCCGTGCCCGTGTTTCTGACCAG
GTGCTGCCCTGGCATCAGTCCCCGGGTGAGAGTCCCTGGTTAGACAGGAACAGGCCCAAA
GAATGGTGGTGCTCTGTGGGTGGGTGCCCCGGGCTTTGGCCAGTGGGCCCCCCCATCCCC
CTCCTGCACTGGCCTGCGTGAGTCGGGGGAGTGAGCGCCTGTCTCAGCTGCTATTGGGCA
CGAGGCTTGGCAGAGGGTGGAGCAGGACAGCTCCTCCCGGTACCGCAGTATTTCTCCTCG
CACCTTCTTTCCCATCCCTGTCCTCGTCCTGTGAACCAGTTGCTGCTGTCATCCCCCTGG
CGGGGCTGGTGGGGGGGTGGGGGCCTGGCTCCTTCCACTGACTGCTGTCCCGAGACGACT
ACTCAAGGGGTCTCTGTTCCTTCCTCCAAAAGCCACCTCCCTGCTCACTGCCAGCCCAGG
CACCTCAGTCCCCCTGGGAACCCGTGTCTCCCCCAAGCTGTGCGTACATAGGTGGTGCCC
GTGCCGTGTCCGATGGGGTGAGAGAGGGGCTGTCAGGTGGGGTCCTGGGCCTTTGCTCCT
GTTTCCCCCTTGTCCTCCTCAGCCCACCCATGGCACCCTTGTTTCTAGTTCCTGGGGGTG
CAGGCTGAGACCCCAGAGCCTGTCCCTCCCACATGGTGCGGACAAGACCCCAGAGCCCTC
AAGGGAGCCCAAGGCCACAGCCCTGCGCTCCCCGTCCCGCTTGCTGCCTCTGCCACTTGC
CTGTTTTGCTTCAGTGTTTTGATTCTAGCACTTACATGTGTCCTCTGCCACCAAGCCCTC
CTGTCTCCTACCCCCTTGAGCCCTGGCCCCAGCCCATACAGTGACTTCTGGGAGGGAGAG
GGAGCAGGAGCAGTTGGCCTTGGGTTTGCACAGAGTGGGCAGGGCTTTGGGGGAAAGGCT
GAGCTGCTGTGCTGCTGGGGCCTCCCCTTTGGCCCCCCCTTCAGGCCCTGCACTATGATG
TATGAAATGTATGTACAGACCAGAGATGTTTATACCGCCAATAAAGATGGAGTTTCCATA
TTTACCAGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGTCCCCGGTTCCTGACTCCCTGAGGATCTGCTTACCCAGCAGGCCCAGGGGGTACGC
AGTCCCTCTGCTCTGTGTCAGGCCCCTGCCAGGCTCCCCCGTGCCCGTGTTTCTGACCAG
GTGCTGCCCTGGCATCAGTCCCCGGGTGAGAGTCCCTGGTTAGACAGGAACAGGCCCAAA
GAATGGTGGTGCTCTGTGGGTGGGTGCCCCGGGCTTTGGCCAGTGGGCCCCCCCATCCCC
CTCCTGCACTGGCCTGCGTGAGTCGGGGGAGTGAGCGCCTGTCTCAGCTGCTATTGGGCA
CGAGGCTTGGCAGAGGGTGGAGCAGGACAGCTCCTCCCGGTACCGCAGTATTTCTCCTCG
CACCTTCTTTCCCATCCCTGTCCTCGTCCTGTGAACCAGTTGCTGCTGTCATCCCCCTGG
CGGGGCTGGTGGGGGGGTGGGGGCCTGGCTCCTTCCACTGACTGCTGTCCCGAGACGACT
ACTCAAGGGGTCTCTGTTCCTTCCTCCAAAAGCCACCTCCCTGCTCACTGCCAGCCCAGG
CACCTCAGTCCCCCTGGGAACCCGTGTCTCCCCCAAGCTGTGCGTACATAGGTGGTGCCC
GTGCCGTGTCCGATGGGGTGAGAGAGGGGCTGTCAGGTGGGGTCCTGGGCCTTTGCTCCT
GTTTCCCCCTTGTCCTCCTCAGCCCACCCATGGCACCCTTGTTTCTAGTTCCTGGGGGTG
CAGGCTGAGACCCCAGAGCCTGTCCCTCCCACATGGTGCGGACAAGACCCCAGAGCCCTC
AAGGGAGCCCAAGGCCACAGCCCTGCGCTCCCCGTCCCGCTTGCTGCCTCTGCCACTTGC
CTGTTTTGCTTCAGTGTTTTGATTCTAGCACTTACATGTGTCCTCTGCCACCAAGCCCTC
CTGTCTCCTACCCCCTTGAGCCCTGGCCCCAGCCCATACAGTGACTTCTGGGAGGGAGAG
GGAGCAGGAGCAGTTGGCCTTGGGTTTGCACAGAGTGGGCAGGGCTTTGGGGGAAAGGCT
GAGCTGCTGTGCTGCTGGGGCCTCCCCTTTGGCCCCCCCTTCAGGCCCTGCACTATGATG
TATGAAATGTATGTACAGACCAGAGATGTTTATACCGCCAATAAAGATGGAGTTTCCATA
TTTACCAGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               684-818, - strand, RNAz p=0.947368
               

               
               968-1086, + strand, RNAz p=0.935428

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               684-818, - strand, RNAz p=0.947368
               

               
               968-1086, + strand, RNAz p=0.935428

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               954-1071, - strand, RNAmicro p=0.913763

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               954-1071, - strand, RNAmicro p=0.913763

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK027706, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK027706, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1149, gnl|bosTau2|chr5 (20516976-20515858)
               

               
               1-1149, gnl|Hg17|chr12 (51745833-51744646)
               

               
               1-1149, gnl|Mm7|chr15 (102103700-102102686)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1149, gnl|bosTau2|chr5 (20516976-20515858)
               

               
               1-1149, gnl|Hg17|chr12 (51745833-51744646)
               

               
               1-1149, gnl|Mm7|chr15 (102103700-102102686)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               pty (0.428143)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               nmm (0.132802)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pty (0.428143)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               nmm (0.132802)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

	684-818, - strand, RNAz p=0.947368
	968-1086, + strand, RNAz p=0.935428

	1-1149, gnl\|bosTau2\|chr5 (20516976-20515858)
	1-1149, gnl\|Hg17\|chr12 (51745833-51744646)
	1-1149, gnl\|Mm7\|chr15 (102103700-102102686)

	pty (0.428143)
	fcc (0.197785)
	fty (0.17584)
	fbs (0.175346)
	duo (0.172801)
	fhi (0.169578)
	nco (0.161734)
	hyp (0.142837)
	nmm (0.132802)
	med (0.116252)
	jej (0.0989218)