Non-Coding RNA Search

Ss1.1-Pig4-TMW8029H13.5

Sequence:


               
               GCAGCCCAAAAAGACAAAAAACAAACAAAAACCTTACCTAGCCTTCCACAAACTAAATAA
TCACTATCTTTGTCAATATATTCCTACTCTTTGCCACCTCAAAGCTGAGCGGGTATATAA
AAATAACCCTTCCAGAGTGGGGTGACAGTGGGGAAAAGAATTTTCCAAGCCATGGTGACC
TTAGAGAAATGCTCTGGGCTTATCCCAAGGCCCATTCACCCTAAAGGCCACCTCTTGGTA
GAACTAAGAAAACCAGAGCTGAGACCAAAACTTTCCAAAGTAAAAAAAAAATATTAACGT
TCATTAGAAATCTGTTGTGTTCCTAATAATCTAACAGTCCAATAAACATGGCTACAAAAG
ATGAACAGTAATTCCCTTTAGGAATTACTAAAGCATGTGAACCAATACAGAGTTTAACTG
GGTTTCTGTAACAATCATGTTTAGGGCTTTTCATGGTATGTTATAACGCCTGGGACTCAC
AGAATAATTTATCTTCACATCAGGCCTGTATTTGAAATTAAAATAAATTTACATGTCCAG
AAAGATTTTAAAAGAATCTTAATTCAGAACCAATAGTAGGAGCTAAGTGTAAAATAAACG
TCTGCAGAGTCCCAATTCTGGTCTGGGCTCCATTCATTGAGGACTTGCACCCTCTACTGG
TTAGGCTGGGATTTGTGGCAAACTGTCCTGTCCAGAACATCCACAGCAAGTTTTACTTAT
GCAGAGCAGGAAAGGTTAAGTACTCGAAATTCCCTCCCAGTATGCAGGTGAGCTGCTTCA
CATGTGAAGCTTACATGTGATGAGTAGTATTACAATACCACTTATAAAGAACTTTAATTT
TCAAAGAAGCACATTTTGTATTGCTCTAATTTTTTCCAAAAATGTTACGTTGTTTTTATA
ATAAAATAATTTCAGAATATTGACATTTGAGAAGCTTTATAAGAAAATTCATTTACAAGA
GATGTCACTGTTAATGCTCCCCAAGTCAGGCAGGTCATTTTCAAGCATCTTCATGACCAC
CAGCCAGCCCCCGGCTTATATGGGATGAAGGTATTATTTCTGCCCTTCACGTGCTGGTGA
AGAGGGCTGGCCTGGAAATCATTTACCACTAGGAATGACGTTTCTATAAGAAGTGATGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGCCCAAAAAGACAAAAAACAAACAAAAACCTTACCTAGCCTTCCACAAACTAAATAA
TCACTATCTTTGTCAATATATTCCTACTCTTTGCCACCTCAAAGCTGAGCGGGTATATAA
AAATAACCCTTCCAGAGTGGGGTGACAGTGGGGAAAAGAATTTTCCAAGCCATGGTGACC
TTAGAGAAATGCTCTGGGCTTATCCCAAGGCCCATTCACCCTAAAGGCCACCTCTTGGTA
GAACTAAGAAAACCAGAGCTGAGACCAAAACTTTCCAAAGTAAAAAAAAAATATTAACGT
TCATTAGAAATCTGTTGTGTTCCTAATAATCTAACAGTCCAATAAACATGGCTACAAAAG
ATGAACAGTAATTCCCTTTAGGAATTACTAAAGCATGTGAACCAATACAGAGTTTAACTG
GGTTTCTGTAACAATCATGTTTAGGGCTTTTCATGGTATGTTATAACGCCTGGGACTCAC
AGAATAATTTATCTTCACATCAGGCCTGTATTTGAAATTAAAATAAATTTACATGTCCAG
AAAGATTTTAAAAGAATCTTAATTCAGAACCAATAGTAGGAGCTAAGTGTAAAATAAACG
TCTGCAGAGTCCCAATTCTGGTCTGGGCTCCATTCATTGAGGACTTGCACCCTCTACTGG
TTAGGCTGGGATTTGTGGCAAACTGTCCTGTCCAGAACATCCACAGCAAGTTTTACTTAT
GCAGAGCAGGAAAGGTTAAGTACTCGAAATTCCCTCCCAGTATGCAGGTGAGCTGCTTCA
CATGTGAAGCTTACATGTGATGAGTAGTATTACAATACCACTTATAAAGAACTTTAATTT
TCAAAGAAGCACATTTTGTATTGCTCTAATTTTTTCCAAAAATGTTACGTTGTTTTTATA
ATAAAATAATTTCAGAATATTGACATTTGAGAAGCTTTATAAGAAAATTCATTTACAAGA
GATGTCACTGTTAATGCTCCCCAAGTCAGGCAGGTCATTTTCAAGCATCTTCATGACCAC
CAGCCAGCCCCCGGCTTATATGGGATGAAGGTATTATTTCTGCCCTTCACGTGCTGGTGA
AGAGGGCTGGCCTGGAAATCATTTACCACTAGGAATGACGTTTCTATAAGAAGTGATGCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               127-275, + strand, RNAz p=0.999962

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               127-275, + strand, RNAz p=0.999962

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               275-428, - strand, RNAmicro p=0.954223

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               275-428, - strand, RNAmicro p=0.954223

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               127-766, gnl|bosTau2|chr1 (33342367-33342997)
               

               
               127-766, gnl|Hg17|chr3 (140556371-140555576)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               127-766, gnl|bosTau2|chr1 (33342367-33342997)
               

               
               127-766, gnl|Hg17|chr3 (140556371-140555576)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ova (0.129132)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.129132)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

	127-766, gnl\|bosTau2\|chr1 (33342367-33342997)
	127-766, gnl\|Hg17\|chr3 (140556371-140555576)