Non-Coding RNA Search

Ss1.1-Pig4-TMW8029H15.3

Sequence:


               
               GTAGTGAGGGCCAGTTGTATAGAGGGGCTTTCGGTCCTTTGGCCATTGTGGGGAGTGGTC
GGCAAAGCAGAGAGCGGAAGCCGAATAGCTGAGGCTTTTAAATTTGTTTCATTAAGTCTT
GTGCCCGTTGTGAAGAGGCCGGAAGTTGCACTGCTCGACTAGCAACCTCTCAGGATTGGG
GTGGGCAACTGGGCCCCTCCTCTCTCTGGGGACCGGAGGAAACCCTCTGGGACCGTCCCT
GGAGAATCGCGCGAGAAGTGGCAAGCTGGACTGGTACCCAGAAAGTTCTTGTGCACATAT
GTGAGAGATTCCCTAGGGTACCTGCTTATGAATGAAATTGCTGCATCAAAAGGAATTTCT
TCACATGGCTTCTGAAGAAGTGACCATTACAGTTCGTCTCATTCGTTCATTTGAACATCG
CAATTTCAGACCTGTAGTATATCATGGAGTTCATTTGGACCAAACCGTAAAGGAATTTAT
AGTATTTCTTAAGCAAGATATCCCTTTGAAGACCAGCCTGCCACCACCATTCAGAAATTA
TGAATATGATAAACTAAAGATTGTTCATCAAGCACATAAATCAAAGACAAACGAACTTGT
GTTAAGTTTGGAAGATGATGACAAACTCCTTTTAAAAGAAGACAGCACCCTGAAAGCAGC
TGGAATCGCCAATGAAACTGAAATTGCATTCTTCTGTGAAGAAGACTATAAGAACTACAA
GGCTAATCCCATTTCATCCTGGTGAAAACCTCATGGGGCTTCCTTTTTGCATACTTGTAT
TAAGCTCTTTATTCCACTAGTGAGTTTTTGAAATTGACAGATAAACTGAAAAAAAATTAA
TCCCAGGCTCTGCCATTTGATGTAAAATCTGTAAAAATAAAATGCTTTTATTTTTTTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAGTGAGGGCCAGTTGTATAGAGGGGCTTTCGGTCCTTTGGCCATTGTGGGGAGTGGTC
GGCAAAGCAGAGAGCGGAAGCCGAATAGCTGAGGCTTTTAAATTTGTTTCATTAAGTCTT
GTGCCCGTTGTGAAGAGGCCGGAAGTTGCACTGCTCGACTAGCAACCTCTCAGGATTGGG
GTGGGCAACTGGGCCCCTCCTCTCTCTGGGGACCGGAGGAAACCCTCTGGGACCGTCCCT
GGAGAATCGCGCGAGAAGTGGCAAGCTGGACTGGTACCCAGAAAGTTCTTGTGCACATAT
GTGAGAGATTCCCTAGGGTACCTGCTTATGAATGAAATTGCTGCATCAAAAGGAATTTCT
TCACATGGCTTCTGAAGAAGTGACCATTACAGTTCGTCTCATTCGTTCATTTGAACATCG
CAATTTCAGACCTGTAGTATATCATGGAGTTCATTTGGACCAAACCGTAAAGGAATTTAT
AGTATTTCTTAAGCAAGATATCCCTTTGAAGACCAGCCTGCCACCACCATTCAGAAATTA
TGAATATGATAAACTAAAGATTGTTCATCAAGCACATAAATCAAAGACAAACGAACTTGT
GTTAAGTTTGGAAGATGATGACAAACTCCTTTTAAAAGAAGACAGCACCCTGAAAGCAGC
TGGAATCGCCAATGAAACTGAAATTGCATTCTTCTGTGAAGAAGACTATAAGAACTACAA
GGCTAATCCCATTTCATCCTGGTGAAAACCTCATGGGGCTTCCTTTTTGCATACTTGTAT
TAAGCTCTTTATTCCACTAGTGAGTTTTTGAAATTGACAGATAAACTGAAAAAAAATTAA
TCCCAGGCTCTGCCATTTGATGTAAAATCTGTAAAAATAAAATGCTTTTATTTTTTTTAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5RBS7_PONPY

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5RBS7_PONPY

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-282, gnl|bosTau2|chr2 (44430653-44430940)
               

               
               1-282, gnl|Hg17|chr2 (119840568-119840277)
               

               
               1-282, gnl|Mm7|chr1 (119987891-119988159)
               


               
               407-805, gnl|bosTau2|chr22 (2881031-2880640)
               

               
               407-805, gnl|Mm7|chr12 (69698283-69697935)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-282, gnl|bosTau2|chr2 (44430653-44430940)
               

               
               1-282, gnl|Hg17|chr2 (119840568-119840277)
               

               
               1-282, gnl|Mm7|chr1 (119987891-119988159)
               


               
               407-805, gnl|bosTau2|chr22 (2881031-2880640)
               

               
               407-805, gnl|Mm7|chr12 (69698283-69697935)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               mgp (0.230681)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

Expressed library(ies): 11 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

	1-282, gnl\|bosTau2\|chr2 (44430653-44430940)
	1-282, gnl\|Hg17\|chr2 (119840568-119840277)
	1-282, gnl\|Mm7\|chr1 (119987891-119988159)

	407-805, gnl\|bosTau2\|chr22 (2881031-2880640)
	407-805, gnl\|Mm7\|chr12 (69698283-69697935)

	mgp (0.230681)
	mcp (0.170648)
	cki (0.165235)
	fco (0.157208)
	bfe (0.149858)
	ski (0.146735)
	spl (0.143184)
	lnt (0.142308)
	ste (0.135208)
	jca (0.11396)
	spc (0.113366)