Ss1.1-Pig4-TMW8029H22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTTTCTTTCTCTCAGCATCTCCACCCAACCAGCAGAAAACCGGTCTCTGAGGTTCCACC AAAATATGGAACTTGATTTTGGACATTTTGACGAAAGAGATAAGACATCCAGGAACATGC GAGGCTCACGGATGAATGGGCTGCCCAGCCCCACTCACAGCGCCCATTGTAGCTTCTACC GAACCCGAACCTTGCAGGCACTGAGCAACGAGAAGAAAGCCAAGAAGGTACGTTTCTACC GCAATGGGGACCGCTACTTCAAGGGCATTGTGTACGCTGTGTCCTCTGACCGTTTTCGCA GCTTTGACGCCTTGCTGGCTGACCTGACACGATCTCTGTCCGACAACATCAACCTGCCTC AGGGAGTGCGTTACATTTACACCATTGATGGATCCAGGAAAATCGGAAGCATGGATGAAC TGGAGGAAGGGGAAAGCTATGTTTGCTCCTCAGACAACTTCTTTAAAAAGGTGGAGTACA CCAAGAATGTCAATCCCAACTGGTCTGTCAATGTGAAGACATCTGCCAATATGAAAGCTC CTCAGTCCCTGGCTAGCAGCAACAGTGCCCAGGCCAGAGAGAACAAGGACTTTGTGCGCC CCAAGCTGGTGACCATCATCCGCAGTGGGGTGAAGCCTCGGAAGGCTGTGCGTGTGCTTC TGAATAAGAAGACGGCCCACTCTTTTGAGCAAGTCCTTACTGATATCACTGAAGCCATCA AACTAGAGACCGGGGTTGTCAAAAAACTGTACACTCTGGATGGAAAACAGGTAACCTGTC TTCATGATTTTTTTGGTGACGACGATGTGTTTATTGCCTGTGGTCCTGAAAAATTTCGCT ATGCTCAGGATGACTTTTCTCTGGATGAAAATGAATGCCGAGTCATGAAGGGAAACCCGT CGGCCGCAGCTGGCCCAAAGGCATCCCCCACACCTCAGAAGAGTTCAGCCAAGAGCCCTG GCCCCATGCGCCGGAGCAAGTCTCCAGCTGACTCAGCAAACGGAACCTCCAGCAGCCAGC TCTCTACCCCCAAGTCTAAGCAGTCTCCCATCTCTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTTTCTTTCTCTCAGCATCTCCACCCAACCAGCAGAAAACCGGTCTCTGAGGTTCCACC AAAATATGGAACTTGATTTTGGACATTTTGACGAAAGAGATAAGACATCCAGGAACATGC GAGGCTCACGGATGAATGGGCTGCCCAGCCCCACTCACAGCGCCCATTGTAGCTTCTACC GAACCCGAACCTTGCAGGCACTGAGCAACGAGAAGAAAGCCAAGAAGGTACGTTTCTACC GCAATGGGGACCGCTACTTCAAGGGCATTGTGTACGCTGTGTCCTCTGACCGTTTTCGCA GCTTTGACGCCTTGCTGGCTGACCTGACACGATCTCTGTCCGACAACATCAACCTGCCTC AGGGAGTGCGTTACATTTACACCATTGATGGATCCAGGAAAATCGGAAGCATGGATGAAC TGGAGGAAGGGGAAAGCTATGTTTGCTCCTCAGACAACTTCTTTAAAAAGGTGGAGTACA CCAAGAATGTCAATCCCAACTGGTCTGTCAATGTGAAGACATCTGCCAATATGAAAGCTC CTCAGTCCCTGGCTAGCAGCAACAGTGCCCAGGCCAGAGAGAACAAGGACTTTGTGCGCC CCAAGCTGGTGACCATCATCCGCAGTGGGGTGAAGCCTCGGAAGGCTGTGCGTGTGCTTC TGAATAAGAAGACGGCCCACTCTTTTGAGCAAGTCCTTACTGATATCACTGAAGCCATCA AACTAGAGACCGGGGTTGTCAAAAAACTGTACACTCTGGATGGAAAACAGGTAACCTGTC TTCATGATTTTTTTGGTGACGACGATGTGTTTATTGCCTGTGGTCCTGAAAAATTTCGCT ATGCTCAGGATGACTTTTCTCTGGATGAAAATGAATGCCGAGTCATGAAGGGAAACCCGT CGGCCGCAGCTGGCCCAAAGGCATCCCCCACACCTCAGAAGAGTTCAGCCAAGAGCCCTG GCCCCATGCGCCGGAGCAAGTCTCCAGCTGACTCAGCAAACGGAACCTCCAGCAGCCAGC TCTCTACCCCCAAGTCTAAGCAGTCTCCCATCTCTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 873-992, - strand, RNAz p=0.545017 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 873-992, - strand, RNAz p=0.545017 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 43-430, gnl|bosTau2|chrX (19578496-19578109) | |
| 43-430, gnl|canFam2|chrX (87583610-87583994) | |
| 43-430, gnl|danRer3|chrNA (54943554-54943915) | |
| 43-430, gnl|dasNov1|scaffold_3687 (9804-9441) | |
| 43-430, gnl|echTel1|scaffold_300488 (2907-2522) | |
| 43-430, gnl|fr1|chrUn (4513745-4513369) | |
| 43-430, gnl|galGal2|chr4 (12981722-12981339) | |
| 43-430, gnl|hg17|chrX (110459405-110459789) | |
| 43-430, gnl|Hg17|chrX (110459794-110459407) | |
| 43-430, gnl|loxAfr1|scaffold_75167 (9367-9750) | |
| 43-430, gnl|mm7|chrX (138595258-138595642) | |
| 43-430, gnl|Mm7|chrX (138595647-138595260) | |
| 43-430, gnl|monDom2|scaffold_117 (3025671-3025288) | |
| 43-430, gnl|oryCun1|scaffold_162935 (6236-5852) | |
| 43-430, gnl|panTro1|chrX (114198645-114199029) | |
| 43-430, gnl|rheMac2|chrX (110094597-110094981) | |
| 43-430, gnl|rn3|chrX (34650099-34649715) | |
| 43-430, gnl|tetNig1|chr7 (4562873-4563240) | |
| 43-430, gnl|xenTro1|scaffold_646 (253043-252672) | |
| 873-1002, gnl|bosTau2|chrX (19492503-19492374) | |
| 873-1002, gnl|canFam2|chrX (87503233-87503390) | |
| 873-1002, gnl|dasNov1|scaffold_26196 (3874-3715) | |
| 873-1002, gnl|fr1|chrUn (4523919-4523800) | |
| 873-1002, gnl|galGal2|chr4 (13037992-13037845) | |
| 873-1002, gnl|hg17|chrX (110380280-110380439) | |
| 873-1002, gnl|Hg17|chrX (110380415-110380286) | |
| 873-1002, gnl|loxAfr1|scaffold_11238 (13512-13671) | |
| 873-1002, gnl|mm7|chrX (138540078-138540236) | |
| 873-1002, gnl|Mm7|chrX (138540213-138540084) | |
| 873-1002, gnl|monDom2|scaffold_117 (3052206-3052036) | |
| 873-1002, gnl|oryCun1|scaffold_199253 (53590-53436) | |
| 873-1002, gnl|panTro1|chrX (114119480-114119639) | |
| 873-1002, gnl|rheMac2|chrX (110009112-110009271) | |
| 873-1002, gnl|rn3|chrX (34703464-34703302) | |
| 873-1002, gnl|xenTro1|scaffold_646 (285700-285540) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 43-430, gnl|bosTau2|chrX (19578496-19578109) | |
| 43-430, gnl|canFam2|chrX (87583610-87583994) | |
| 43-430, gnl|danRer3|chrNA (54943554-54943915) | |
| 43-430, gnl|dasNov1|scaffold_3687 (9804-9441) | |
| 43-430, gnl|echTel1|scaffold_300488 (2907-2522) | |
| 43-430, gnl|fr1|chrUn (4513745-4513369) | |
| 43-430, gnl|galGal2|chr4 (12981722-12981339) | |
| 43-430, gnl|hg17|chrX (110459405-110459789) | |
| 43-430, gnl|Hg17|chrX (110459794-110459407) | |
| 43-430, gnl|loxAfr1|scaffold_75167 (9367-9750) | |
| 43-430, gnl|mm7|chrX (138595258-138595642) | |
| 43-430, gnl|Mm7|chrX (138595647-138595260) | |
| 43-430, gnl|monDom2|scaffold_117 (3025671-3025288) | |
| 43-430, gnl|oryCun1|scaffold_162935 (6236-5852) | |
| 43-430, gnl|panTro1|chrX (114198645-114199029) | |
| 43-430, gnl|rheMac2|chrX (110094597-110094981) | |
| 43-430, gnl|rn3|chrX (34650099-34649715) | |
| 43-430, gnl|tetNig1|chr7 (4562873-4563240) | |
| 43-430, gnl|xenTro1|scaffold_646 (253043-252672) | |
| 873-1002, gnl|bosTau2|chrX (19492503-19492374) | |
| 873-1002, gnl|canFam2|chrX (87503233-87503390) | |
| 873-1002, gnl|dasNov1|scaffold_26196 (3874-3715) | |
| 873-1002, gnl|fr1|chrUn (4523919-4523800) | |
| 873-1002, gnl|galGal2|chr4 (13037992-13037845) | |
| 873-1002, gnl|hg17|chrX (110380280-110380439) | |
| 873-1002, gnl|Hg17|chrX (110380415-110380286) | |
| 873-1002, gnl|loxAfr1|scaffold_11238 (13512-13671) | |
| 873-1002, gnl|mm7|chrX (138540078-138540236) | |
| 873-1002, gnl|Mm7|chrX (138540213-138540084) | |
| 873-1002, gnl|monDom2|scaffold_117 (3052206-3052036) | |
| 873-1002, gnl|oryCun1|scaffold_199253 (53590-53436) | |
| 873-1002, gnl|panTro1|chrX (114119480-114119639) | |
| 873-1002, gnl|rheMac2|chrX (110009112-110009271) | |
| 873-1002, gnl|rn3|chrX (34703464-34703302) | |
| 873-1002, gnl|xenTro1|scaffold_646 (285700-285540) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.119646) |