Non-Coding RNA Search

Ss1.1-Pig4-TMW8029H24.3

Sequence:


               
               CGGGGGCGTCCCCCCTCAACCCTCCACCTCAGAGTCCCCCGACGTCACCCTCGTGACCCA
GCAACTGTCCAAGTCACAGGTGGAAGACCCCTTGCCCCCCGTGTTCTCGGGCACCCCAAA
GGGCAGCGGGGCTGGCTATGGCGTCGGCTTTGACCTGGAGGAATTCCTCAACCAGTCTTT
CGACATGGGCGTGGCTGATGGGCCCCAGGACGGCCAGGCAGACTCGGCCTCGCTCTCGGC
CTCCCTGCTTGCCGACTGGCTCGAGGGCCACGGCATGAACCCCGCTGACATCGAGTCCCT
ACAGCGTGAGATCCAGATGGACTCCCCGATGCTGCTGGCTGACCTGCCCGACCTCCAGGA
GCCCTGAGGCCCCTCGTCTGTGCCTTGCTGCCAGGGGCAGACCCAGCTCCAAGACCCCTA
GGGACAGTCCCCAGGCCTCCGGGACCCACAGGGACAGTCCCCAGGCCTCCAGGACCCACA
GGGACGGTCCCCAGGGCTGGAGCCGAGCCCAGCCAGGAAGCTCAGCTCGGTTCTCCTGCA
GGTTCATCTCACACCCACCCTGCAGCCTTAAGCAGCCACCTGAGCCAGCACGAGCCACAG
CAGGAGGGGAAGCCTTTATCCCCGTGCGATTCTTCTCAGTATTGTATTTTTATTATTATT
ATTATTGTTATTATTATTATTACACAGTTTTTGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGGGCGTCCCCCCTCAACCCTCCACCTCAGAGTCCCCCGACGTCACCCTCGTGACCCA
GCAACTGTCCAAGTCACAGGTGGAAGACCCCTTGCCCCCCGTGTTCTCGGGCACCCCAAA
GGGCAGCGGGGCTGGCTATGGCGTCGGCTTTGACCTGGAGGAATTCCTCAACCAGTCTTT
CGACATGGGCGTGGCTGATGGGCCCCAGGACGGCCAGGCAGACTCGGCCTCGCTCTCGGC
CTCCCTGCTTGCCGACTGGCTCGAGGGCCACGGCATGAACCCCGCTGACATCGAGTCCCT
ACAGCGTGAGATCCAGATGGACTCCCCGATGCTGCTGGCTGACCTGCCCGACCTCCAGGA
GCCCTGAGGCCCCTCGTCTGTGCCTTGCTGCCAGGGGCAGACCCAGCTCCAAGACCCCTA
GGGACAGTCCCCAGGCCTCCGGGACCCACAGGGACAGTCCCCAGGCCTCCAGGACCCACA
GGGACGGTCCCCAGGGCTGGAGCCGAGCCCAGCCAGGAAGCTCAGCTCGGTTCTCCTGCA
GGTTCATCTCACACCCACCCTGCAGCCTTAAGCAGCCACCTGAGCCAGCACGAGCCACAG
CAGGAGGGGAAGCCTTTATCCCCGTGCGATTCTTCTCAGTATTGTATTTTTATTATTATT
ATTATTGTTATTATTATTATTACACAGTTTTTGCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21361046|gb|AAM49786.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21361046|gb|AAM49786.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               210-433, gnl|bosTau2|chr19 (26943756-26943978)
               

               
               210-433, gnl|Hg17|chr17 (19226980-19227201)
               

               
               210-433, gnl|Mm7|chr11 (61570832-61570611)
               


               
               449-692, gnl|bosTau2|chr19 (26943938-26944181)
               

               
               449-692, gnl|Hg17|chr17 (19227162-19227400)
               

               
               449-692, gnl|Mm7|chr11 (61570650-61570418)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               210-433, gnl|bosTau2|chr19 (26943756-26943978)
               

               
               210-433, gnl|Hg17|chr17 (19226980-19227201)
               

               
               210-433, gnl|Mm7|chr11 (61570832-61570611)
               


               
               449-692, gnl|bosTau2|chr19 (26943938-26944181)
               

               
               449-692, gnl|Hg17|chr17 (19227162-19227400)
               

               
               449-692, gnl|Mm7|chr11 (61570650-61570418)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               ese (0.379507)
               

               
               ill (0.175593)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.379507)
               

               
               ill (0.175593)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

	210-433, gnl\|bosTau2\|chr19 (26943756-26943978)
	210-433, gnl\|Hg17\|chr17 (19226980-19227201)
	210-433, gnl\|Mm7\|chr11 (61570832-61570611)

	449-692, gnl\|bosTau2\|chr19 (26943938-26944181)
	449-692, gnl\|Hg17\|chr17 (19227162-19227400)
	449-692, gnl\|Mm7\|chr11 (61570650-61570418)

	ese (0.379507)
	ill (0.175593)
	cag (0.151194)
	hyp (0.142837)
	cov (0.132153)
	cly (0.120642)
	eru (0.120048)
	ebs (0.118301)