Non-Coding RNA Search

Ss1.1-Pig4-TMW8029I09.5

Sequence:


               
               CTCCACTCCAGGCCTTTTCAGCCCTCCCTGCCCTCCTTTGCTCTCCTGTACACCCCTCTT
AACCGACCTGCAAACTAAGGGATGGATAGATCATGTGCCAACAAACTTGATTGATGGAGT
TCTTTAAAGAATTAGCCATGGCTCTCCAAAAAGGAAAAAAAAAAAACAAAAAAAAAAAAA
AAAAAAACGGACAGACTTGCTTTAAACAAATAACATTTTAGTCTGTGTTTCTTCTGTTCA
CGTGTTCTGGTTTAAGTCGCCTGTGTATATTAACTTCTCGGTGGAGTACTGGCAAGATTA
TCAGACAAAACAGCTTAAACTATCCCATTTTGTGTTCTGTTCCTCTAGCTAATAACTTAA
TAGAACTGATTCTCACCCAGCCCAGGTCAAGAATCTGTGAGACGTGAAACTGAAGTACTA
ATTCAACTTACTTTGAAACCAAAACTAATGTTTAAACCAAAAAGCATAATAGTGATTTTG
AGGCAAGATGAAAAACTGCATTTTAAAAATTGTAGGTGGACTGTTTTCATTTCGAAGCAG
AATGTCTGTTGTGAATGCTGAAACCCATTTCAGGATGATGATAGCATGCTTTTCTCTTTT
GCTGACTAAAATATATATGGTGGTTTGCTAACTTCTATTGACCATATGGGCTGGCTGGTT
TTTATTAATAATTATTTAGGTACCCTAAGATCTATAATATAAAAGATATTCTGTTTATCT
ACAATGCATTTTATAATCATTTCTATGAAATGTATTTTGTTTAATCGAATAAGCTAATAA
GTGAATTGGTTACATCATTTGTATTTGTTAGCCTACCAGACAAGAATCATGCCTGGTGTA
CCCCTGGCTTTTAATAAATACTCATTGGTTAAAATGAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCACTCCAGGCCTTTTCAGCCCTCCCTGCCCTCCTTTGCTCTCCTGTACACCCCTCTT
AACCGACCTGCAAACTAAGGGATGGATAGATCATGTGCCAACAAACTTGATTGATGGAGT
TCTTTAAAGAATTAGCCATGGCTCTCCAAAAAGGAAAAAAAAAAAACAAAAAAAAAAAAA
AAAAAAACGGACAGACTTGCTTTAAACAAATAACATTTTAGTCTGTGTTTCTTCTGTTCA
CGTGTTCTGGTTTAAGTCGCCTGTGTATATTAACTTCTCGGTGGAGTACTGGCAAGATTA
TCAGACAAAACAGCTTAAACTATCCCATTTTGTGTTCTGTTCCTCTAGCTAATAACTTAA
TAGAACTGATTCTCACCCAGCCCAGGTCAAGAATCTGTGAGACGTGAAACTGAAGTACTA
ATTCAACTTACTTTGAAACCAAAACTAATGTTTAAACCAAAAAGCATAATAGTGATTTTG
AGGCAAGATGAAAAACTGCATTTTAAAAATTGTAGGTGGACTGTTTTCATTTCGAAGCAG
AATGTCTGTTGTGAATGCTGAAACCCATTTCAGGATGATGATAGCATGCTTTTCTCTTTT
GCTGACTAAAATATATATGGTGGTTTGCTAACTTCTATTGACCATATGGGCTGGCTGGTT
TTTATTAATAATTATTTAGGTACCCTAAGATCTATAATATAAAAGATATTCTGTTTATCT
ACAATGCATTTTATAATCATTTCTATGAAATGTATTTTGTTTAATCGAATAAGCTAATAA
GTGAATTGGTTACATCATTTGTATTTGTTAGCCTACCAGACAAGAATCATGCCTGGTGTA
CCCCTGGCTTTTAATAAATACTCATTGGTTAAAATGAAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               2-875, gnl|bosTau2|chr7 (23466860-23465991)
               

               
               2-875, gnl|Hg17|chr5 (125856868-125857742)
               

               
               2-875, gnl|Mm7|chr18 (56884563-56885407)
               


               
               301-684, gnl|bosTau2|chr12 (27938282-27938660)
               

               
               301-684, gnl|Hg17|chr5 (125857150-125857551)
               

               
               301-684, gnl|Mm7|chr18 (56884854-56885231)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-875, gnl|bosTau2|chr7 (23466860-23465991)
               

               
               2-875, gnl|Hg17|chr5 (125856868-125857742)
               

               
               2-875, gnl|Mm7|chr18 (56884563-56885407)
               


               
               301-684, gnl|bosTau2|chr12 (27938282-27938660)
               

               
               301-684, gnl|Hg17|chr5 (125857150-125857551)
               

               
               301-684, gnl|Mm7|chr18 (56884854-56885231)

Expressed library(ies): 21 entry(ies)

More info

Expressed library(ies): 21 entry(ies)

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               lin (0.582411)
               

               
               tra (0.492368)
               

               
               ret (0.257467)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               mgm (0.180343)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.582411)
               

               
               tra (0.492368)
               

               
               ret (0.257467)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               mgm (0.180343)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	2-875, gnl\|bosTau2\|chr7 (23466860-23465991)
	2-875, gnl\|Hg17\|chr5 (125856868-125857742)
	2-875, gnl\|Mm7\|chr18 (56884563-56885407)

	301-684, gnl\|bosTau2\|chr12 (27938282-27938660)
	301-684, gnl\|Hg17\|chr5 (125857150-125857551)
	301-684, gnl\|Mm7\|chr18 (56884854-56885231)

	lin (0.582411)
	tra (0.492368)
	ret (0.257467)
	hea (0.204499)
	col (0.195008)
	mgm (0.180343)
	fbs (0.175346)
	sin (0.174948)
	rec (0.17307)
	fhi (0.169578)
	mga (0.160205)
	fco (0.157208)
	fat (0.147427)
	ski (0.146735)
	pty (0.142714)
	kid (0.129735)
	ova (0.129132)
	thg (0.126791)
	jca (0.11396)
	jej (0.0989218)
	eje (0.0988338)